Upload Final_Model_Source_Code.ipynb
Browse files- Final_Model_Source_Code.ipynb +797 -0
Final_Model_Source_Code.ipynb
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| 1 |
+
{
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| 2 |
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"cells": [
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| 3 |
+
{
|
| 4 |
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"cell_type": "markdown",
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| 5 |
+
"source": [
|
| 6 |
+
"# Install Necessary Packages"
|
| 7 |
+
],
|
| 8 |
+
"metadata": {
|
| 9 |
+
"id": "GUB8N3k9fq-E"
|
| 10 |
+
}
|
| 11 |
+
},
|
| 12 |
+
{
|
| 13 |
+
"cell_type": "code",
|
| 14 |
+
"execution_count": null,
|
| 15 |
+
"metadata": {
|
| 16 |
+
"id": "zt59bSq5vcnA"
|
| 17 |
+
},
|
| 18 |
+
"outputs": [],
|
| 19 |
+
"source": [
|
| 20 |
+
"#Necessary installations\n",
|
| 21 |
+
"!pip install datasets evaluate transformers[sentencepiece]\n",
|
| 22 |
+
"!pip install huggingface_hub\n",
|
| 23 |
+
"!pip install pandas\n",
|
| 24 |
+
"!pip install imblearn\n",
|
| 25 |
+
"!pip install torch"
|
| 26 |
+
]
|
| 27 |
+
},
|
| 28 |
+
{
|
| 29 |
+
"cell_type": "markdown",
|
| 30 |
+
"source": [
|
| 31 |
+
"# Load the Dataset"
|
| 32 |
+
],
|
| 33 |
+
"metadata": {
|
| 34 |
+
"id": "9lyEyWBic5RN"
|
| 35 |
+
}
|
| 36 |
+
},
|
| 37 |
+
{
|
| 38 |
+
"cell_type": "code",
|
| 39 |
+
"execution_count": null,
|
| 40 |
+
"metadata": {
|
| 41 |
+
"id": "QJDszQKe6oxK"
|
| 42 |
+
},
|
| 43 |
+
"outputs": [],
|
| 44 |
+
"source": [
|
| 45 |
+
"from datasets import Features, Value, ClassLabel\n",
|
| 46 |
+
"import pandas as pd\n",
|
| 47 |
+
"\n",
|
| 48 |
+
"from datasets import load_dataset\n",
|
| 49 |
+
"dataset = load_dataset(\"19kmunz/iot-23-preprocessed-minimumcolumns\")\n",
|
| 50 |
+
"print(dataset.shape)"
|
| 51 |
+
]
|
| 52 |
+
},
|
| 53 |
+
{
|
| 54 |
+
"cell_type": "markdown",
|
| 55 |
+
"metadata": {
|
| 56 |
+
"id": "wRjakUpXD3D9"
|
| 57 |
+
},
|
| 58 |
+
"source": [
|
| 59 |
+
"# Oversample the Dataset"
|
| 60 |
+
]
|
| 61 |
+
},
|
| 62 |
+
{
|
| 63 |
+
"cell_type": "code",
|
| 64 |
+
"execution_count": null,
|
| 65 |
+
"metadata": {
|
| 66 |
+
"id": "wzU5AHGxD2Ut"
|
| 67 |
+
},
|
| 68 |
+
"outputs": [],
|
| 69 |
+
"source": [
|
| 70 |
+
"from imblearn.over_sampling import SMOTE\n",
|
| 71 |
+
"from sklearn.preprocessing import OneHotEncoder\n",
|
| 72 |
+
"from sklearn.preprocessing import LabelEncoder\n",
|
| 73 |
+
"from sklearn.model_selection import train_test_split"
|
| 74 |
+
]
|
| 75 |
+
},
|
| 76 |
+
{
|
| 77 |
+
"cell_type": "code",
|
| 78 |
+
"execution_count": null,
|
| 79 |
+
"metadata": {
|
| 80 |
+
"id": "mT027c7R1t7n"
|
| 81 |
+
},
|
| 82 |
+
"outputs": [],
|
| 83 |
+
"source": [
|
| 84 |
+
"df = dataset['train'].to_pandas()\n"
|
| 85 |
+
]
|
| 86 |
+
},
|
| 87 |
+
{
|
| 88 |
+
"cell_type": "code",
|
| 89 |
+
"execution_count": null,
|
| 90 |
+
"metadata": {
|
| 91 |
+
"id": "v2l9xGpr6bZc"
|
| 92 |
+
},
|
| 93 |
+
"outputs": [],
|
| 94 |
+
"source": [
|
| 95 |
+
"# Separate features and target\n",
|
| 96 |
+
"features = ['id.resp_p', 'proto', 'conn_state', 'orig_pkts', 'orig_ip_bytes', 'resp_ip_bytes']\n",
|
| 97 |
+
"X = df[features]\n",
|
| 98 |
+
"y = df['label']"
|
| 99 |
+
]
|
| 100 |
+
},
|
| 101 |
+
{
|
| 102 |
+
"cell_type": "markdown",
|
| 103 |
+
"metadata": {
|
| 104 |
+
"id": "SlFbgG_69B1K"
|
| 105 |
+
},
|
| 106 |
+
"source": [
|
| 107 |
+
"ADASYN and SMOTE oversampling algorithm expects numeric data, but features like proto is non-numeric categorical column. SMOTE cannot handle the string values like 'tcp' in those columns. So, I applied one hot encoding to categorical columns and then applied SMOTE"
|
| 108 |
+
]
|
| 109 |
+
},
|
| 110 |
+
{
|
| 111 |
+
"cell_type": "code",
|
| 112 |
+
"execution_count": null,
|
| 113 |
+
"metadata": {
|
| 114 |
+
"id": "8zSNEGIiWjMZ"
|
| 115 |
+
},
|
| 116 |
+
"outputs": [],
|
| 117 |
+
"source": [
|
| 118 |
+
"#########################################NEWWWW#############################################\n",
|
| 119 |
+
"# Define categorical columns to be label-encoded\n",
|
| 120 |
+
"cat_cols = ['proto', 'conn_state']\n",
|
| 121 |
+
"\n",
|
| 122 |
+
"# Initialize a dictionary to store label encoders for each column\n",
|
| 123 |
+
"label_encoders = {}\n",
|
| 124 |
+
"label_encoded_columns = {} # Store label-encoded columns\n",
|
| 125 |
+
"\n",
|
| 126 |
+
"for col in cat_cols:\n",
|
| 127 |
+
" le = LabelEncoder()\n",
|
| 128 |
+
" label_encoded = le.fit_transform(df[col])\n",
|
| 129 |
+
" df[col + '_label'] = label_encoded # Create new columns with label-encoded data\n",
|
| 130 |
+
" label_encoders[col] = le\n",
|
| 131 |
+
" label_encoded_columns[col] = label_encoded\n",
|
| 132 |
+
"# Get numeric columns\n",
|
| 133 |
+
"num_cols = ['id.resp_p','orig_pkts', 'orig_ip_bytes', 'resp_ip_bytes']\n",
|
| 134 |
+
"\n",
|
| 135 |
+
"# Extract numeric columns\n",
|
| 136 |
+
"X_num = df[num_cols]\n",
|
| 137 |
+
"\n",
|
| 138 |
+
"# Concatenate label-encoded columns and numeric columns\n",
|
| 139 |
+
"X_combined = pd.concat([df[['proto_label', 'conn_state_label']], X_num], axis=1)\n",
|
| 140 |
+
"\n",
|
| 141 |
+
"# Store the labels in y_os\n",
|
| 142 |
+
"y_os = df['label']\n",
|
| 143 |
+
"y_os1 = df['label'].apply(lambda x: 0 if x == \"Benign\" else 1)\n",
|
| 144 |
+
"\n",
|
| 145 |
+
"# Specify desired number of samples\n",
|
| 146 |
+
"#k_neighbors = 10000 - y_os.shape[0]\n",
|
| 147 |
+
"\n",
|
| 148 |
+
"# Perform oversampling using SMOTE\n",
|
| 149 |
+
"smote = SMOTE(sampling_strategy={0: 5000, 1: 5000})\n",
|
| 150 |
+
"X_combined_os, Y_combined_os = smote.fit_resample(X_combined, y_os1)"
|
| 151 |
+
]
|
| 152 |
+
},
|
| 153 |
+
{
|
| 154 |
+
"cell_type": "code",
|
| 155 |
+
"source": [
|
| 156 |
+
"# Print new class counts\n",
|
| 157 |
+
"print(Y_combined_os.value_counts())\n",
|
| 158 |
+
"print(X_combined_os.shape)"
|
| 159 |
+
],
|
| 160 |
+
"metadata": {
|
| 161 |
+
"id": "mZ1iMnEIkVAj"
|
| 162 |
+
},
|
| 163 |
+
"execution_count": null,
|
| 164 |
+
"outputs": []
|
| 165 |
+
},
|
| 166 |
+
{
|
| 167 |
+
"cell_type": "markdown",
|
| 168 |
+
"source": [
|
| 169 |
+
"# Split the Dataset"
|
| 170 |
+
],
|
| 171 |
+
"metadata": {
|
| 172 |
+
"id": "oO9g2nhlbr3o"
|
| 173 |
+
}
|
| 174 |
+
},
|
| 175 |
+
{
|
| 176 |
+
"cell_type": "code",
|
| 177 |
+
"execution_count": null,
|
| 178 |
+
"metadata": {
|
| 179 |
+
"id": "OzJI6451n4tE"
|
| 180 |
+
},
|
| 181 |
+
"outputs": [],
|
| 182 |
+
"source": [
|
| 183 |
+
"# Manually define the column names\n",
|
| 184 |
+
"column_names = ['proto_label', 'conn_state_label', 'id.resp_p','orig_pkts', 'orig_ip_bytes', 'resp_ip_bytes']\n",
|
| 185 |
+
"result_column = ['label']\n",
|
| 186 |
+
"\n",
|
| 187 |
+
"# Create a new DataFrame with the oversampled data and specified column names\n",
|
| 188 |
+
"X_combined_os_df = pd.DataFrame(X_combined_os, columns=column_names)\n",
|
| 189 |
+
"Y_combined_os_df = pd.DataFrame(Y_combined_os, columns=result_column)\n",
|
| 190 |
+
"\n",
|
| 191 |
+
"# Print the first 5 rows of the oversampled data\n",
|
| 192 |
+
"print(X_combined_os_df.shape)\n",
|
| 193 |
+
"print(X_combined_os_df.head())"
|
| 194 |
+
]
|
| 195 |
+
},
|
| 196 |
+
{
|
| 197 |
+
"cell_type": "code",
|
| 198 |
+
"execution_count": null,
|
| 199 |
+
"metadata": {
|
| 200 |
+
"id": "YwnVJ7RqKFRD"
|
| 201 |
+
},
|
| 202 |
+
"outputs": [],
|
| 203 |
+
"source": [
|
| 204 |
+
"# Split oversampled data\n",
|
| 205 |
+
"\n",
|
| 206 |
+
"# Initial split into train and temp test sets\n",
|
| 207 |
+
"X_train, X_temp, y_train, y_temp = train_test_split(X_combined_os_df, Y_combined_os_df, test_size=0.2, random_state=42)\n",
|
| 208 |
+
"\n",
|
| 209 |
+
"# Split oversampled data\n",
|
| 210 |
+
"X_val, X_test, y_val, y_test = train_test_split(X_temp, y_temp, test_size=0.2, random_state=42)\n",
|
| 211 |
+
"\n",
|
| 212 |
+
"print(\"Oversampled dataset shape:\", X_combined_os.shape)\n",
|
| 213 |
+
"print(\"X_train shape:\", X_train.shape)\n",
|
| 214 |
+
"print(\"X_test shape:\", X_test.shape)\n",
|
| 215 |
+
"print(\"X_val shape:\", X_val.shape)\n"
|
| 216 |
+
]
|
| 217 |
+
},
|
| 218 |
+
{
|
| 219 |
+
"cell_type": "markdown",
|
| 220 |
+
"metadata": {
|
| 221 |
+
"id": "WHobtry9LI_d"
|
| 222 |
+
},
|
| 223 |
+
"source": [
|
| 224 |
+
"# Tokenize the Dataset"
|
| 225 |
+
]
|
| 226 |
+
},
|
| 227 |
+
{
|
| 228 |
+
"cell_type": "markdown",
|
| 229 |
+
"source": [
|
| 230 |
+
"### Run one of the following cell if loading from local. Otherwise x_train and y_train are already defined."
|
| 231 |
+
],
|
| 232 |
+
"metadata": {
|
| 233 |
+
"id": "3UMlgohccAPg"
|
| 234 |
+
}
|
| 235 |
+
},
|
| 236 |
+
{
|
| 237 |
+
"cell_type": "code",
|
| 238 |
+
"source": [
|
| 239 |
+
"import pandas as pd\n",
|
| 240 |
+
"X_train = pd.read_csv('X_train.csv', index_col=0)\n",
|
| 241 |
+
"y_train = pd.read_csv('y_train.csv', index_col=0)"
|
| 242 |
+
],
|
| 243 |
+
"metadata": {
|
| 244 |
+
"id": "z2BM318ufee_"
|
| 245 |
+
},
|
| 246 |
+
"execution_count": null,
|
| 247 |
+
"outputs": []
|
| 248 |
+
},
|
| 249 |
+
{
|
| 250 |
+
"cell_type": "code",
|
| 251 |
+
"source": [
|
| 252 |
+
"train_encodings = torch.load('train_encodings.pt')\n",
|
| 253 |
+
"val_encodings = torch.load('val_encodings.pt')\n",
|
| 254 |
+
"test_encodings = torch.load('test_encodings.pt')"
|
| 255 |
+
],
|
| 256 |
+
"metadata": {
|
| 257 |
+
"id": "sVTr9fxIMZl9"
|
| 258 |
+
},
|
| 259 |
+
"execution_count": null,
|
| 260 |
+
"outputs": []
|
| 261 |
+
},
|
| 262 |
+
{
|
| 263 |
+
"cell_type": "markdown",
|
| 264 |
+
"source": [
|
| 265 |
+
"### Otherwise, Continue running here"
|
| 266 |
+
],
|
| 267 |
+
"metadata": {
|
| 268 |
+
"id": "j0FyKqdMezWv"
|
| 269 |
+
}
|
| 270 |
+
},
|
| 271 |
+
{
|
| 272 |
+
"cell_type": "code",
|
| 273 |
+
"execution_count": null,
|
| 274 |
+
"metadata": {
|
| 275 |
+
"id": "U09fvCzaMn2P"
|
| 276 |
+
},
|
| 277 |
+
"outputs": [],
|
| 278 |
+
"source": [
|
| 279 |
+
"# Dictionary of feature names to use in the make sentence function\n",
|
| 280 |
+
"feature_names = {'id.resp_p':'response port',\n",
|
| 281 |
+
" 'proto_label':'transport protocol',\n",
|
| 282 |
+
" 'orig_pkts':'number of packets sent by the origin',\n",
|
| 283 |
+
" 'conn_state_label':'connection state',\n",
|
| 284 |
+
" 'orig_ip_bytes':'number of IP level bytes sent by the originator',\n",
|
| 285 |
+
" 'resp_ip_bytes':'number of IP level bytes sent by the responder'}\n",
|
| 286 |
+
"\n",
|
| 287 |
+
"# Function to make sentences out of the data\n",
|
| 288 |
+
"def make_sentence(row):\n",
|
| 289 |
+
" sentences = {}\n",
|
| 290 |
+
" for feature in row.keys():\n",
|
| 291 |
+
" if feature != 'label':\n",
|
| 292 |
+
" sentences[feature] = feature_names[feature] + \" is \" + str(row[feature]) + \".\"\n",
|
| 293 |
+
" return sentences"
|
| 294 |
+
]
|
| 295 |
+
},
|
| 296 |
+
{
|
| 297 |
+
"cell_type": "code",
|
| 298 |
+
"execution_count": null,
|
| 299 |
+
"metadata": {
|
| 300 |
+
"id": "Fe_vj8hO9dNw"
|
| 301 |
+
},
|
| 302 |
+
"outputs": [],
|
| 303 |
+
"source": [
|
| 304 |
+
"# Take all sentence observations and make them into paragraph inputs\n",
|
| 305 |
+
"def make_paragraphs(ser):\n",
|
| 306 |
+
" paragraphs_list = []\n",
|
| 307 |
+
" for index,obs in ser.items():\n",
|
| 308 |
+
" new_para = obs['id.resp_p'] + \" \" + obs['proto_label'] + \" \" + obs['conn_state_label'] + \" \" + obs['orig_pkts'] + \" \" + obs['orig_ip_bytes'] + \" \" + obs['resp_ip_bytes']\n",
|
| 309 |
+
" paragraphs_list.append(new_para)\n",
|
| 310 |
+
" return pd.Series(paragraphs_list, index=ser.index)"
|
| 311 |
+
]
|
| 312 |
+
},
|
| 313 |
+
{
|
| 314 |
+
"cell_type": "code",
|
| 315 |
+
"execution_count": null,
|
| 316 |
+
"metadata": {
|
| 317 |
+
"id": "bNyv9zOlGaBm"
|
| 318 |
+
},
|
| 319 |
+
"outputs": [],
|
| 320 |
+
"source": [
|
| 321 |
+
"from transformers import BertTokenizer\n",
|
| 322 |
+
"tokenizer = BertTokenizer.from_pretrained(\"bert-base-cased\")\n",
|
| 323 |
+
"\n",
|
| 324 |
+
"\n",
|
| 325 |
+
"# Transform the dataset into sentences\n",
|
| 326 |
+
"X_train_sentences = X_train.apply(make_sentence, axis=1)\n",
|
| 327 |
+
"X_val_sentences = X_val.apply(make_sentence, axis=1)\n",
|
| 328 |
+
"X_test_sentences = X_test.apply(make_sentence, axis=1)\n",
|
| 329 |
+
"\n",
|
| 330 |
+
"# Transform the sentences into paragraphs\n",
|
| 331 |
+
"X_train_paragraphs = make_paragraphs(X_train_sentences)\n",
|
| 332 |
+
"X_val_paragraphs = make_paragraphs(X_val_sentences)\n",
|
| 333 |
+
"X_test_paragraphs = make_paragraphs(X_test_sentences)\n",
|
| 334 |
+
"\n",
|
| 335 |
+
"# Turn labels into lists of strings\n",
|
| 336 |
+
"y_train_str = [str(y) for y in y_train['label'].tolist()]\n",
|
| 337 |
+
"y_val_str = [str(y) for y in y_val['label'].tolist()]\n",
|
| 338 |
+
"y_test_str = [str(y) for y in y_test['label'].tolist()]"
|
| 339 |
+
]
|
| 340 |
+
},
|
| 341 |
+
{
|
| 342 |
+
"cell_type": "code",
|
| 343 |
+
"execution_count": null,
|
| 344 |
+
"metadata": {
|
| 345 |
+
"id": "f5bT1RIEW0O7"
|
| 346 |
+
},
|
| 347 |
+
"outputs": [],
|
| 348 |
+
"source": [
|
| 349 |
+
"import torch\n",
|
| 350 |
+
"# Encode both paragraphs and the labels\n",
|
| 351 |
+
"train_encodings = tokenizer(text=X_train_paragraphs.tolist(), padding='longest', truncation=True, return_tensors='pt')\n",
|
| 352 |
+
"val_encodings = tokenizer(text=X_val_paragraphs.tolist(), padding='longest', truncation=True, return_tensors='pt')\n",
|
| 353 |
+
"test_encodings = tokenizer(text=X_test_paragraphs.tolist(), padding='longest', truncation=True, return_tensors='pt')\n",
|
| 354 |
+
"\n",
|
| 355 |
+
"# Add label tensors\n",
|
| 356 |
+
"y_train_tensor = torch.tensor(y_train['label'].values)\n",
|
| 357 |
+
"y_val_tensor = torch.tensor(y_val['label'].values)\n",
|
| 358 |
+
"y_test_tensor = torch.tensor(y_test['label'].values)\n",
|
| 359 |
+
"\n",
|
| 360 |
+
"train_encodings['labels'] = y_train_tensor\n",
|
| 361 |
+
"val_encodings['labels'] = y_val_tensor\n",
|
| 362 |
+
"test_encodings['labels'] = y_test_tensor"
|
| 363 |
+
]
|
| 364 |
+
},
|
| 365 |
+
{
|
| 366 |
+
"cell_type": "code",
|
| 367 |
+
"execution_count": null,
|
| 368 |
+
"metadata": {
|
| 369 |
+
"id": "OV600RIVGlTi"
|
| 370 |
+
},
|
| 371 |
+
"outputs": [],
|
| 372 |
+
"source": [
|
| 373 |
+
"torch.save(train_encodings, 'train_encodings.pt')\n",
|
| 374 |
+
"torch.save(val_encodings, 'val_encodings.pt')\n",
|
| 375 |
+
"torch.save(test_encodings, 'test_encodings.pt')"
|
| 376 |
+
]
|
| 377 |
+
},
|
| 378 |
+
{
|
| 379 |
+
"cell_type": "markdown",
|
| 380 |
+
"source": [
|
| 381 |
+
"# Finally, prepare dataset as Hugging Face Dataset"
|
| 382 |
+
],
|
| 383 |
+
"metadata": {
|
| 384 |
+
"id": "gev2VE5VcnaY"
|
| 385 |
+
}
|
| 386 |
+
},
|
| 387 |
+
{
|
| 388 |
+
"cell_type": "markdown",
|
| 389 |
+
"metadata": {
|
| 390 |
+
"id": "ZNmaJOCUifpD"
|
| 391 |
+
},
|
| 392 |
+
"source": [
|
| 393 |
+
"### Optional: Load training, validation, and test encodings in from Drive or local"
|
| 394 |
+
]
|
| 395 |
+
},
|
| 396 |
+
{
|
| 397 |
+
"cell_type": "code",
|
| 398 |
+
"source": [
|
| 399 |
+
"from google.colab import drive\n",
|
| 400 |
+
"drive.mount('/content/drive')"
|
| 401 |
+
],
|
| 402 |
+
"metadata": {
|
| 403 |
+
"id": "7NlSBStpD_rO"
|
| 404 |
+
},
|
| 405 |
+
"execution_count": null,
|
| 406 |
+
"outputs": []
|
| 407 |
+
},
|
| 408 |
+
{
|
| 409 |
+
"cell_type": "code",
|
| 410 |
+
"source": [
|
| 411 |
+
"!pip install torch==2.1.0\n",
|
| 412 |
+
"!pip install -U transformers[torch]\n",
|
| 413 |
+
"!pip install optimum[exporters]"
|
| 414 |
+
],
|
| 415 |
+
"metadata": {
|
| 416 |
+
"id": "okamUGSAmBYN"
|
| 417 |
+
},
|
| 418 |
+
"execution_count": null,
|
| 419 |
+
"outputs": []
|
| 420 |
+
},
|
| 421 |
+
{
|
| 422 |
+
"cell_type": "code",
|
| 423 |
+
"source": [
|
| 424 |
+
"import torch\n",
|
| 425 |
+
"from transformers import BertTokenizer\n",
|
| 426 |
+
"# Load tensor data back from drive\n",
|
| 427 |
+
"train_encodings = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/train_encodings.pt\")\n",
|
| 428 |
+
"val_encodings = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/val_encodings.pt\")\n",
|
| 429 |
+
"test_encodings = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/test_encodings.pt\")\n",
|
| 430 |
+
"\n",
|
| 431 |
+
"# Load labels tensors back from drive\n",
|
| 432 |
+
"# y_train_tensor = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/y_train_tensor.pt\")\n",
|
| 433 |
+
"# y_val_tensor = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/y_val_tensor.pt\")\n",
|
| 434 |
+
"# y_test_tensor = torch.load(\"/content/drive/MyDrive/CS513 Final Project/Resources/y_test_tensor.pt\")"
|
| 435 |
+
],
|
| 436 |
+
"metadata": {
|
| 437 |
+
"id": "rVEX0OhgEAJT"
|
| 438 |
+
},
|
| 439 |
+
"execution_count": null,
|
| 440 |
+
"outputs": []
|
| 441 |
+
},
|
| 442 |
+
{
|
| 443 |
+
"cell_type": "code",
|
| 444 |
+
"source": [
|
| 445 |
+
"# FROM LOCAL\n",
|
| 446 |
+
"import torch\n",
|
| 447 |
+
"train_encodings = torch.load(\"train_encodings.pt\")\n",
|
| 448 |
+
"val_encodings = torch.load(\"val_encodings.pt\")\n",
|
| 449 |
+
"test_encodings = torch.load(\"test_encodings.pt\")"
|
| 450 |
+
],
|
| 451 |
+
"metadata": {
|
| 452 |
+
"id": "Jxbp-oouNHsT"
|
| 453 |
+
},
|
| 454 |
+
"execution_count": null,
|
| 455 |
+
"outputs": []
|
| 456 |
+
},
|
| 457 |
+
{
|
| 458 |
+
"cell_type": "code",
|
| 459 |
+
"source": [
|
| 460 |
+
"print(train_encodings['input_ids'].size())"
|
| 461 |
+
],
|
| 462 |
+
"metadata": {
|
| 463 |
+
"colab": {
|
| 464 |
+
"base_uri": "https://localhost:8080/"
|
| 465 |
+
},
|
| 466 |
+
"id": "YY7xwbuZlhK4",
|
| 467 |
+
"outputId": "3faf0705-93f8-456e-8dbf-22b406314766"
|
| 468 |
+
},
|
| 469 |
+
"execution_count": null,
|
| 470 |
+
"outputs": [
|
| 471 |
+
{
|
| 472 |
+
"output_type": "stream",
|
| 473 |
+
"name": "stdout",
|
| 474 |
+
"text": [
|
| 475 |
+
"torch.Size([8000, 67])\n"
|
| 476 |
+
]
|
| 477 |
+
}
|
| 478 |
+
]
|
| 479 |
+
},
|
| 480 |
+
{
|
| 481 |
+
"cell_type": "markdown",
|
| 482 |
+
"source": [
|
| 483 |
+
"### Otherwise, continue running here"
|
| 484 |
+
],
|
| 485 |
+
"metadata": {
|
| 486 |
+
"id": "dlTL3uj1fKF6"
|
| 487 |
+
}
|
| 488 |
+
},
|
| 489 |
+
{
|
| 490 |
+
"cell_type": "code",
|
| 491 |
+
"source": [
|
| 492 |
+
"# Creating small datasets to test finetuning\n",
|
| 493 |
+
"train = train_encodings\n",
|
| 494 |
+
"eval = val_encodings\n",
|
| 495 |
+
"test = test_encodings\n",
|
| 496 |
+
"\n",
|
| 497 |
+
"# Creating small datasets to test finetuning (delete :1000 for full dataset)\n",
|
| 498 |
+
"#train = train_encodings[:1000]\n",
|
| 499 |
+
"#eval = val_encodings[:1000]\n",
|
| 500 |
+
"#test = test_encodings[:1000]\n",
|
| 501 |
+
"\n",
|
| 502 |
+
"# Replacing target tensors (delete :128 for full label tensors)\n",
|
| 503 |
+
"# train['labels'] = y_train_tensor[:1000]\n",
|
| 504 |
+
"# eval['labels'] = y_val_tensor[:1000]\n",
|
| 505 |
+
"# test['labels'] = y_test_tensor[:1000]\n",
|
| 506 |
+
"\n",
|
| 507 |
+
"# Pytorch tensors to HF Dataset\n",
|
| 508 |
+
"from datasets import Dataset\n",
|
| 509 |
+
"train_dataset = Dataset.from_dict(train)\n",
|
| 510 |
+
"eval_dataset = Dataset.from_dict(eval)\n",
|
| 511 |
+
"test_dataset = Dataset.from_dict(test)"
|
| 512 |
+
],
|
| 513 |
+
"metadata": {
|
| 514 |
+
"id": "llZN2akWHxe5"
|
| 515 |
+
},
|
| 516 |
+
"execution_count": null,
|
| 517 |
+
"outputs": []
|
| 518 |
+
},
|
| 519 |
+
{
|
| 520 |
+
"cell_type": "markdown",
|
| 521 |
+
"metadata": {
|
| 522 |
+
"id": "SRLNGcQFvJAa"
|
| 523 |
+
},
|
| 524 |
+
"source": [
|
| 525 |
+
"# Fine-tune BERT for benign vs malicious"
|
| 526 |
+
]
|
| 527 |
+
},
|
| 528 |
+
{
|
| 529 |
+
"cell_type": "code",
|
| 530 |
+
"execution_count": null,
|
| 531 |
+
"metadata": {
|
| 532 |
+
"id": "xf2CGlW1dLlH"
|
| 533 |
+
},
|
| 534 |
+
"outputs": [],
|
| 535 |
+
"source": [
|
| 536 |
+
"import torch\n",
|
| 537 |
+
"import torch.nn as nn\n",
|
| 538 |
+
"from transformers import BertTokenizer, BertForSequenceClassification, AdamW, get_linear_schedule_with_warmup\n",
|
| 539 |
+
"from transformers import Trainer, TrainingArguments\n",
|
| 540 |
+
"from torch.utils.data import DataLoader, TensorDataset, random_split\n",
|
| 541 |
+
"from sklearn.model_selection import train_test_split\n",
|
| 542 |
+
"from sklearn.utils.class_weight import compute_class_weight"
|
| 543 |
+
]
|
| 544 |
+
},
|
| 545 |
+
{
|
| 546 |
+
"cell_type": "code",
|
| 547 |
+
"source": [
|
| 548 |
+
"import numpy as np\n",
|
| 549 |
+
"import evaluate\n",
|
| 550 |
+
"\n",
|
| 551 |
+
"combined_metrics = evaluate.combine([\"accuracy\", \"f1\"])"
|
| 552 |
+
],
|
| 553 |
+
"metadata": {
|
| 554 |
+
"id": "maPzffCsAS__"
|
| 555 |
+
},
|
| 556 |
+
"execution_count": null,
|
| 557 |
+
"outputs": []
|
| 558 |
+
},
|
| 559 |
+
{
|
| 560 |
+
"cell_type": "code",
|
| 561 |
+
"source": [
|
| 562 |
+
"def compute_metrics(eval_pred):\n",
|
| 563 |
+
" logits, labels = eval_pred\n",
|
| 564 |
+
" predictions = np.argmax(logits, axis=-1)\n",
|
| 565 |
+
" results = combined_metrics.compute(predictions=predictions, references=labels)\n",
|
| 566 |
+
" print(f\"Accuracy: {results['accuracy']:.3f}% | F1: {results['f1']:.3f}\")\n",
|
| 567 |
+
" return results"
|
| 568 |
+
],
|
| 569 |
+
"metadata": {
|
| 570 |
+
"id": "Subi5OZxAvlh"
|
| 571 |
+
},
|
| 572 |
+
"execution_count": null,
|
| 573 |
+
"outputs": []
|
| 574 |
+
},
|
| 575 |
+
{
|
| 576 |
+
"cell_type": "code",
|
| 577 |
+
"source": [
|
| 578 |
+
"# Load pretrained BERT model\n",
|
| 579 |
+
"model = BertForSequenceClassification.from_pretrained('bert-base-uncased', num_labels=2)\n",
|
| 580 |
+
"\n",
|
| 581 |
+
"# OR Load local model\n",
|
| 582 |
+
"# model = BertForSequenceClassification.from_pretrained('./model', num_labels=2)"
|
| 583 |
+
],
|
| 584 |
+
"metadata": {
|
| 585 |
+
"id": "OWLPaQn9ysMg"
|
| 586 |
+
},
|
| 587 |
+
"execution_count": null,
|
| 588 |
+
"outputs": []
|
| 589 |
+
},
|
| 590 |
+
{
|
| 591 |
+
"cell_type": "code",
|
| 592 |
+
"source": [
|
| 593 |
+
"# Define TrainingArguments\n",
|
| 594 |
+
"training_args = TrainingArguments(\n",
|
| 595 |
+
" output_dir='./results',\n",
|
| 596 |
+
" num_train_epochs=6,\n",
|
| 597 |
+
" per_device_train_batch_size=32,\n",
|
| 598 |
+
" # per_device_eval_batch_size=16,\n",
|
| 599 |
+
" warmup_steps=500,\n",
|
| 600 |
+
" weight_decay=0.01,\n",
|
| 601 |
+
" logging_dir='./logs',\n",
|
| 602 |
+
" # logging_steps=0.10,\n",
|
| 603 |
+
" eval_steps=0.10,\n",
|
| 604 |
+
" save_steps=0.10,\n",
|
| 605 |
+
" logging_strategy='epoch',\n",
|
| 606 |
+
" evaluation_strategy='epoch',\n",
|
| 607 |
+
" save_strategy='epoch',\n",
|
| 608 |
+
" save_total_limit=2,\n",
|
| 609 |
+
" load_best_model_at_end=True\n",
|
| 610 |
+
")\n",
|
| 611 |
+
"\n",
|
| 612 |
+
"# Create Trainer instance\n",
|
| 613 |
+
"trainer = Trainer(\n",
|
| 614 |
+
" model=model,\n",
|
| 615 |
+
" args=training_args,\n",
|
| 616 |
+
" train_dataset=train_dataset,\n",
|
| 617 |
+
" eval_dataset=eval_dataset,\n",
|
| 618 |
+
" compute_metrics=compute_metrics\n",
|
| 619 |
+
")\n",
|
| 620 |
+
"\n",
|
| 621 |
+
"# Train\n",
|
| 622 |
+
"trainer.train()"
|
| 623 |
+
],
|
| 624 |
+
"metadata": {
|
| 625 |
+
"id": "7a-zvoP0j8C8"
|
| 626 |
+
},
|
| 627 |
+
"execution_count": null,
|
| 628 |
+
"outputs": []
|
| 629 |
+
},
|
| 630 |
+
{
|
| 631 |
+
"cell_type": "code",
|
| 632 |
+
"source": [
|
| 633 |
+
"print(test_dataset)"
|
| 634 |
+
],
|
| 635 |
+
"metadata": {
|
| 636 |
+
"id": "SzDiVYRf23dp"
|
| 637 |
+
},
|
| 638 |
+
"execution_count": null,
|
| 639 |
+
"outputs": []
|
| 640 |
+
},
|
| 641 |
+
{
|
| 642 |
+
"cell_type": "code",
|
| 643 |
+
"execution_count": null,
|
| 644 |
+
"metadata": {
|
| 645 |
+
"id": "TlxpJByQXL_w"
|
| 646 |
+
},
|
| 647 |
+
"outputs": [],
|
| 648 |
+
"source": [
|
| 649 |
+
"# Use test_dataset instead to test it later\n",
|
| 650 |
+
"trainer.evaluate(eval_dataset=test_dataset)"
|
| 651 |
+
]
|
| 652 |
+
},
|
| 653 |
+
{
|
| 654 |
+
"cell_type": "code",
|
| 655 |
+
"source": [
|
| 656 |
+
"model.save_pretrained('./model')"
|
| 657 |
+
],
|
| 658 |
+
"metadata": {
|
| 659 |
+
"id": "dqMkv8aA5Tdk"
|
| 660 |
+
},
|
| 661 |
+
"execution_count": null,
|
| 662 |
+
"outputs": []
|
| 663 |
+
},
|
| 664 |
+
{
|
| 665 |
+
"cell_type": "markdown",
|
| 666 |
+
"source": [
|
| 667 |
+
"# Save to Hugging Face"
|
| 668 |
+
],
|
| 669 |
+
"metadata": {
|
| 670 |
+
"id": "-qKGOqJTWt3a"
|
| 671 |
+
}
|
| 672 |
+
},
|
| 673 |
+
{
|
| 674 |
+
"cell_type": "code",
|
| 675 |
+
"source": [
|
| 676 |
+
"from huggingface_hub import create_repo"
|
| 677 |
+
],
|
| 678 |
+
"metadata": {
|
| 679 |
+
"id": "m0mCacsshEhy"
|
| 680 |
+
},
|
| 681 |
+
"execution_count": null,
|
| 682 |
+
"outputs": []
|
| 683 |
+
},
|
| 684 |
+
{
|
| 685 |
+
"cell_type": "code",
|
| 686 |
+
"source": [
|
| 687 |
+
"!pip install cupy --upgrade"
|
| 688 |
+
],
|
| 689 |
+
"metadata": {
|
| 690 |
+
"id": "Ba-kOs8WqQTl"
|
| 691 |
+
},
|
| 692 |
+
"execution_count": null,
|
| 693 |
+
"outputs": []
|
| 694 |
+
},
|
| 695 |
+
{
|
| 696 |
+
"cell_type": "code",
|
| 697 |
+
"source": [
|
| 698 |
+
"libcuda.so.1"
|
| 699 |
+
],
|
| 700 |
+
"metadata": {
|
| 701 |
+
"id": "AK2rcA5-qyGh"
|
| 702 |
+
},
|
| 703 |
+
"execution_count": null,
|
| 704 |
+
"outputs": []
|
| 705 |
+
},
|
| 706 |
+
{
|
| 707 |
+
"cell_type": "code",
|
| 708 |
+
"source": [
|
| 709 |
+
"!pip install onnxruntime\n",
|
| 710 |
+
"import onnxruntime as rt\n",
|
| 711 |
+
"import onnx\n",
|
| 712 |
+
"import cv2"
|
| 713 |
+
],
|
| 714 |
+
"metadata": {
|
| 715 |
+
"id": "8z2pir6uo-vM"
|
| 716 |
+
},
|
| 717 |
+
"execution_count": null,
|
| 718 |
+
"outputs": []
|
| 719 |
+
},
|
| 720 |
+
{
|
| 721 |
+
"cell_type": "code",
|
| 722 |
+
"source": [
|
| 723 |
+
"!optimum-cli export onnx --model ./ --task question-answering ./results/checkpoint-10"
|
| 724 |
+
],
|
| 725 |
+
"metadata": {
|
| 726 |
+
"id": "WlderhErraWX"
|
| 727 |
+
},
|
| 728 |
+
"execution_count": null,
|
| 729 |
+
"outputs": []
|
| 730 |
+
},
|
| 731 |
+
{
|
| 732 |
+
"cell_type": "code",
|
| 733 |
+
"source": [
|
| 734 |
+
"from onnxruntime import ORTModelForSequenceClassification\n",
|
| 735 |
+
"\n",
|
| 736 |
+
"ort_model = ORTModelForSequenceClassification.from_pretrained(model, export=True)\n",
|
| 737 |
+
"\n",
|
| 738 |
+
"ort_model.save_pretrained(\"./results/checkpoint-10\")"
|
| 739 |
+
],
|
| 740 |
+
"metadata": {
|
| 741 |
+
"id": "NzPr5eIkZfi7"
|
| 742 |
+
},
|
| 743 |
+
"execution_count": null,
|
| 744 |
+
"outputs": []
|
| 745 |
+
},
|
| 746 |
+
{
|
| 747 |
+
"cell_type": "code",
|
| 748 |
+
"source": [
|
| 749 |
+
"# Export model\n",
|
| 750 |
+
"import torch\n",
|
| 751 |
+
"# Get input ids\n",
|
| 752 |
+
"input_ids = train_dataset['input_ids']\n",
|
| 753 |
+
"# Convert to torch tensor\n",
|
| 754 |
+
"input_ids = torch.tensor(input_ids)\n",
|
| 755 |
+
"\n",
|
| 756 |
+
"torch.onnx.export(model, # Model being run\n",
|
| 757 |
+
" input_ids, # Model input\n",
|
| 758 |
+
" \"IoT23_Log_Prediction.onnx\",# Where to save the model\n",
|
| 759 |
+
" export_params=True, # Store model parameters\n",
|
| 760 |
+
" output_names=['labels'],\n",
|
| 761 |
+
" opset_version=11, # ONNX version\n",
|
| 762 |
+
" do_constant_folding=True, # Optimize\n",
|
| 763 |
+
" input_names = ['input_ids'])"
|
| 764 |
+
],
|
| 765 |
+
"metadata": {
|
| 766 |
+
"id": "ZM8xTkjeTm0c"
|
| 767 |
+
},
|
| 768 |
+
"execution_count": null,
|
| 769 |
+
"outputs": []
|
| 770 |
+
}
|
| 771 |
+
],
|
| 772 |
+
"metadata": {
|
| 773 |
+
"colab": {
|
| 774 |
+
"provenance": [],
|
| 775 |
+
"collapsed_sections": [
|
| 776 |
+
"td-xtcTdcoVO",
|
| 777 |
+
"GUB8N3k9fq-E",
|
| 778 |
+
"9lyEyWBic5RN",
|
| 779 |
+
"wRjakUpXD3D9",
|
| 780 |
+
"oO9g2nhlbr3o",
|
| 781 |
+
"3UMlgohccAPg",
|
| 782 |
+
"gev2VE5VcnaY",
|
| 783 |
+
"ZNmaJOCUifpD",
|
| 784 |
+
"L0eqXeQUTpXM"
|
| 785 |
+
]
|
| 786 |
+
},
|
| 787 |
+
"kernelspec": {
|
| 788 |
+
"display_name": "Python 3",
|
| 789 |
+
"name": "python3"
|
| 790 |
+
},
|
| 791 |
+
"language_info": {
|
| 792 |
+
"name": "python"
|
| 793 |
+
}
|
| 794 |
+
},
|
| 795 |
+
"nbformat": 4,
|
| 796 |
+
"nbformat_minor": 0
|
| 797 |
+
}
|