Update README.md

README.md

@@ -1,3 +1,45 @@
----
-license: unknown
----
+---
+tags:
+- biogpt
+- boolean-query
+- biomedical
+- systematic-review
+- pubmed
+license: unknown
+model-index:
+- name: BioGPT-BQF-TMK-Large
+  results:
+  - task:
+      type: text-generation
+      name: Text Generation
+    dataset:
+      name: CLEF TAR
+      type: biomedical
+    metrics:
+      - name: Precision @100
+        type: precision
+        value: 0.1455
+      - name: Recall @1000
+        type: recall
+        value: 0.2661
+---
+
+# BioGPT-BQF-TMK-Large
+Fine-tuned BioGPT for Biomedical Boolean Query Formalization using Titles only.
+
+## Model Details
+- Base Model: BioGPT
+- Fine-tuned on: Semi-synthetic generated data
+- Task: Boolean Query Generation for PubMed searches
+
+## How to Use
+```python
+from transformers import BioGptForCausalLM, BioGptTokenizer
+
+model = BioGptForCausalLM.from_pretrained("AI4BSLR/BioGPT-BQF-TMK-Large")
+tokenizer = BioGptTokenizer.from_pretrained("AI4BSLR/BioGPT-BQF-TMK-Large")
+
+input_text = "Title: Heterogeneity in Lung Cancer, MeSH: Biomarkers, Tumor, Genetic Heterogeneity, Keywords: Biomarkers, Query: "
+inputs = tokenizer(input_text, return_tensors="pt")
+outputs = model.generate(**inputs)
+print(tokenizer.decode(outputs[0], skip_special_tokens=True))