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AI4PD
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Mol2Pro-tokenizer

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tokenizer
smiles
protein
molecule-to-protein
Model card Files
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Upload tokenizers

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Files changed (8) hide show
  1. aa/special_tokens_map.json +125 -0
  2. aa/tokenizer.json +0 -0
  3. aa/tokenizer_config.json +938 -0
  4. smiles/merges.txt +1238 -0
  5. smiles/special_tokens_map.json +37 -0
  6. smiles/tokenizer.json +2254 -0
  7. smiles/tokenizer_config.json +54 -0
  8. smiles/vocab.json +886 -0
aa/special_tokens_map.json ADDED
@@ -0,0 +1,125 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
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+ "additional_special_tokens": [
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+ "<extra_id_0>",
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+ "<extra_id_1>",
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+ "<extra_id_2>",
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+ "<extra_id_3>",
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+ "<extra_id_4>",
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+ "<extra_id_5>",
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+ "<extra_id_6>",
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+ "<extra_id_7>",
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+ "<extra_id_8>",
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+ "<extra_id_9>",
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+ "<extra_id_10>",
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+ "<extra_id_11>",
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+ "<extra_id_12>",
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+ "<extra_id_13>",
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+ "<extra_id_14>",
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+ "<extra_id_15>",
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+ "<extra_id_16>",
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+ "<extra_id_17>",
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+ "<extra_id_18>",
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+ "<extra_id_19>",
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+ "<extra_id_20>",
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+ "<extra_id_21>",
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+ "<extra_id_22>",
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+ "<extra_id_23>",
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+ "<extra_id_24>",
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+ "<extra_id_25>",
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+ "<extra_id_26>",
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+ "<extra_id_27>",
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+ "<extra_id_28>",
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+ "<extra_id_29>",
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+ "<extra_id_30>",
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+ "<extra_id_31>",
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+ "<extra_id_32>",
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+ "<extra_id_33>",
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+ "<extra_id_34>",
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+ "<extra_id_35>",
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+ "<extra_id_36>",
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+ "<extra_id_37>",
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+ "<extra_id_38>",
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+ "<extra_id_39>",
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+ "<extra_id_40>",
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+ "<extra_id_41>",
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+ "<extra_id_42>",
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+ "<extra_id_43>",
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+ "<extra_id_44>",
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+ "<extra_id_45>",
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+ "<extra_id_46>",
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+ "<extra_id_47>",
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+ "<extra_id_48>",
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+ "<extra_id_49>",
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+ "<extra_id_50>",
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+ "<extra_id_51>",
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+ "<extra_id_52>",
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+ "<extra_id_53>",
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+ "<extra_id_54>",
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+ "<extra_id_55>",
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+ "<extra_id_56>",
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+ "<extra_id_57>",
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+ "<extra_id_58>",
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+ "<extra_id_59>",
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+ "<extra_id_60>",
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+ "<extra_id_61>",
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+ "<extra_id_62>",
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+ "<extra_id_63>",
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+ "<extra_id_64>",
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+ "<extra_id_65>",
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+ "<extra_id_66>",
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+ "<extra_id_67>",
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+ "<extra_id_68>",
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+ "<extra_id_69>",
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+ "<extra_id_70>",
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+ "<extra_id_71>",
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+ "<extra_id_72>",
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+ "<extra_id_73>",
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+ "<extra_id_74>",
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+ "<extra_id_75>",
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+ "<extra_id_76>",
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+ "<extra_id_77>",
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+ "<extra_id_78>",
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+ "<extra_id_79>",
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+ "<extra_id_80>",
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+ "<extra_id_81>",
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+ "<extra_id_82>",
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+ "<extra_id_83>",
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+ "<extra_id_84>",
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+ "<extra_id_85>",
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+ "<extra_id_86>",
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+ "<extra_id_87>",
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+ "<extra_id_88>",
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+ "<extra_id_89>",
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+ "<extra_id_90>",
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+ "<extra_id_91>",
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+ "<extra_id_92>",
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+ "<extra_id_93>",
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+ "<extra_id_94>",
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+ "<extra_id_95>",
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+ "<extra_id_96>",
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+ "<extra_id_97>",
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+ "<extra_id_98>",
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+ "<extra_id_99>"
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+ ],
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+ "eos_token": {
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+ "lstrip": false,
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+ "single_word": false
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+ },
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+ "pad_token": {
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+ "content": "<pad>",
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+ "lstrip": false,
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+ "single_word": false
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+ "unk_token": {
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+ "single_word": false
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+ }
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+ }
aa/tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
aa/tokenizer_config.json ADDED
@@ -0,0 +1,938 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ {
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122
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123
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124
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125
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126
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127
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128
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129
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130
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131
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132
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
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143
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144
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145
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146
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147
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148
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149
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150
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151
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152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
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167
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168
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169
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170
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171
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172
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173
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174
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175
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176
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177
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178
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179
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180
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181
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182
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183
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184
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185
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186
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187
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188
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189
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190
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191
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192
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193
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194
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195
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196
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197
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198
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199
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200
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201
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202
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203
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204
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205
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206
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207
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208
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209
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210
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211
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212
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213
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214
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215
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216
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217
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218
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219
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220
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221
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222
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223
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224
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225
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226
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227
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228
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229
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230
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231
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232
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233
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234
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235
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236
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237
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238
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239
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240
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241
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242
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243
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244
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245
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246
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247
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248
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249
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250
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251
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252
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253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
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265
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266
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267
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268
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269
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270
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271
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272
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273
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274
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275
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276
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277
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278
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279
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280
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281
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282
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283
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284
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285
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286
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287
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288
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289
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290
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291
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292
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293
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294
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295
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296
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297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
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315
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316
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317
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318
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319
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320
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321
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322
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323
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324
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325
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326
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327
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328
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329
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330
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331
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332
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333
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334
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335
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336
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337
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338
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339
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340
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341
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342
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343
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344
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345
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346
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347
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348
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349
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350
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351
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352
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353
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354
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355
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356
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357
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358
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359
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360
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361
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362
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363
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364
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365
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366
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367
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368
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369
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370
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371
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372
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373
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374
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375
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376
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377
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378
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379
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380
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381
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382
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383
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384
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385
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386
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387
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388
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389
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390
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391
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392
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393
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394
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395
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396
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397
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398
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399
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400
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401
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402
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403
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404
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405
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406
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407
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408
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409
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410
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411
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412
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413
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414
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415
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416
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417
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418
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419
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420
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421
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422
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423
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424
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425
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426
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427
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428
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429
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430
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431
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432
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433
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434
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435
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436
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437
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438
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439
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440
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441
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442
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443
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444
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445
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446
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447
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448
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449
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450
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451
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452
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453
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454
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455
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456
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457
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458
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459
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460
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461
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462
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463
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464
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465
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466
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467
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468
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469
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470
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471
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472
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473
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474
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475
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476
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477
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478
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479
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480
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481
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482
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483
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484
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485
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486
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487
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488
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489
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490
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491
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492
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493
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494
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495
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496
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497
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498
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499
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500
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501
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502
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503
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504
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505
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506
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507
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508
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509
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510
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511
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512
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513
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514
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515
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516
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517
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518
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519
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520
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521
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522
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523
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524
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525
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526
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527
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528
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529
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530
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531
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532
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533
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534
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535
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536
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537
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538
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539
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540
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541
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542
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543
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544
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545
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546
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547
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548
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549
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550
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551
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552
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553
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554
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555
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556
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557
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558
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559
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560
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561
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562
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563
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564
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565
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566
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567
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568
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569
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570
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571
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572
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573
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574
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575
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576
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577
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578
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579
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580
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581
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582
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583
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584
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585
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586
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587
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588
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589
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590
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591
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592
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593
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594
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595
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596
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597
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598
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599
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600
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601
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602
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603
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604
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605
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606
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607
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608
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609
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610
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611
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612
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613
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614
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615
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616
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617
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618
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619
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620
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621
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622
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623
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624
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625
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626
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627
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628
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629
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630
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631
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632
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633
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634
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635
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636
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637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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651
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652
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653
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654
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655
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656
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657
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658
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659
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660
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661
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662
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663
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664
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665
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666
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667
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668
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669
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670
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671
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672
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673
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674
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675
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676
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677
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678
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679
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680
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681
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682
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683
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684
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685
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686
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687
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688
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689
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690
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691
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692
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693
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694
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695
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696
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697
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698
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699
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700
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701
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702
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703
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704
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705
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706
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707
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708
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709
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710
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711
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712
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713
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714
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715
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716
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717
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718
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719
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720
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721
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722
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723
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724
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725
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726
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727
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728
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729
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730
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731
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732
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733
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734
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735
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736
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737
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738
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739
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740
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741
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742
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743
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744
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745
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746
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747
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748
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749
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750
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751
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752
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753
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754
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755
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756
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757
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758
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759
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760
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761
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762
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763
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764
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765
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766
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767
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768
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769
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770
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771
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772
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773
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774
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775
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776
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777
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778
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779
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780
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781
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782
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783
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784
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785
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786
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787
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788
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789
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790
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791
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792
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793
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794
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795
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796
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797
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798
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799
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800
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801
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802
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803
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804
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805
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806
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807
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808
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809
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810
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811
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812
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813
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814
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815
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816
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817
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818
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819
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820
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821
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822
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823
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824
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825
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826
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827
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828
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829
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830
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831
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832
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833
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834
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835
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836
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837
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838
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839
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840
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841
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842
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843
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844
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845
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846
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847
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848
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849
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850
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851
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852
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853
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854
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855
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856
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857
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858
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859
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860
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861
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862
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863
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864
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865
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866
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867
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868
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869
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870
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871
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872
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873
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874
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875
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876
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877
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878
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879
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880
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881
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882
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883
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884
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885
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886
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887
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888
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889
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890
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891
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892
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893
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894
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895
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896
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897
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898
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899
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900
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901
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902
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903
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904
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905
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906
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907
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908
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909
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910
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911
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912
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913
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914
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915
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916
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917
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918
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919
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920
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921
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922
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923
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924
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925
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926
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927
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928
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929
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930
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931
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932
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933
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934
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935
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936
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937
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938
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939
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940
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941
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942
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943
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944
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945
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946
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947
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948
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949
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950
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951
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952
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953
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954
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955
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956
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957
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958
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959
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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972
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973
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974
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975
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976
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977
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978
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979
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980
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981
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982
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983
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984
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985
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986
+ [H H
987
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988
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989
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990
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991
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992
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993
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994
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995
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996
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997
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998
+ [Pb +
999
+ [Pb+ ]
1000
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+ "[H g",
1561
+ "[Hg +",
1562
+ "[Hg+ 2",
1563
+ "[Hg+2 ]",
1564
+ "[ A",
1565
+ "[A l",
1566
+ "[Al -",
1567
+ "[Al- ]",
1568
+ "[ C",
1569
+ "[C e",
1570
+ "[Ce +",
1571
+ "[Ce+ 3",
1572
+ "[Ce+3 ]",
1573
+ "[ N",
1574
+ "[N ]",
1575
+ "[ M",
1576
+ "[M g",
1577
+ "[Mg ]",
1578
+ "[ C",
1579
+ "[C d",
1580
+ "[Cd +",
1581
+ "[Cd+ 2",
1582
+ "[Cd+2 ]",
1583
+ "[ P",
1584
+ "[P t",
1585
+ "[Pt +",
1586
+ "[Pt+ ]",
1587
+ "[ B",
1588
+ "[B e",
1589
+ "[Be -",
1590
+ "[Be- ]",
1591
+ "[ X",
1592
+ "[X e",
1593
+ "[Xe ]",
1594
+ "[ K",
1595
+ "[K r",
1596
+ "[Kr ]",
1597
+ "[ T",
1598
+ "[T a",
1599
+ "[Ta ]",
1600
+ "[ L",
1601
+ "[L a",
1602
+ "[La +",
1603
+ "[La+ 3",
1604
+ "[La+3 ]",
1605
+ "[ B",
1606
+ "[B a",
1607
+ "[Ba +",
1608
+ "[Ba+ 2",
1609
+ "[Ba+2 ]",
1610
+ "[ W",
1611
+ "[W +",
1612
+ "[W+ 4",
1613
+ "[W+4 ]",
1614
+ "[ N",
1615
+ "[N i",
1616
+ "[Ni +",
1617
+ "[Ni+ ]",
1618
+ "[ S",
1619
+ "[S b",
1620
+ "[Sb +",
1621
+ "[Sb+ ]",
1622
+ "[ S",
1623
+ "[S b",
1624
+ "[Sb +",
1625
+ "[Sb+ 3",
1626
+ "[Sb+3 ]",
1627
+ "[ T",
1628
+ "[T l",
1629
+ "[Tl +",
1630
+ "[Tl+ ]",
1631
+ "[ C",
1632
+ "[C s",
1633
+ "[Cs +",
1634
+ "[Cs+ ]",
1635
+ "[ A",
1636
+ "[A u",
1637
+ "[Au +",
1638
+ "[Au+ ]",
1639
+ "[ Y",
1640
+ "[Y b",
1641
+ "[Yb +",
1642
+ "[Yb+ 3",
1643
+ "[Yb+3 ]",
1644
+ "[ G",
1645
+ "[G a",
1646
+ "[Ga +",
1647
+ "[Ga+ 3",
1648
+ "[Ga+3 ]",
1649
+ "[ C",
1650
+ "[C r",
1651
+ "[Cr +",
1652
+ "[Cr+ 3",
1653
+ "[Cr+3 ]",
1654
+ "[ A",
1655
+ "[A s",
1656
+ "[As +",
1657
+ "[As+ ]",
1658
+ "[ M",
1659
+ "[M n",
1660
+ "[Mn +",
1661
+ "[Mn+ 3",
1662
+ "[Mn+3 ]",
1663
+ "[ R",
1664
+ "[R u",
1665
+ "[Ru +",
1666
+ "[Ru+ 2",
1667
+ "[Ru+2 ]",
1668
+ "[ I",
1669
+ "[I r",
1670
+ "[Ir +",
1671
+ "[Ir+ 3",
1672
+ "[Ir+3 ]",
1673
+ "[ P",
1674
+ "[P d",
1675
+ "[Pd +",
1676
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1677
+ "[Pd+2 ]",
1678
+ "[ B",
1679
+ "[B e",
1680
+ "[Be ]",
1681
+ "[ B",
1682
+ "[B e",
1683
+ "[Be -",
1684
+ "[Be- 2",
1685
+ "[Be-2 ]",
1686
+ "[ Y",
1687
+ "[Y ]",
1688
+ "[ M",
1689
+ "[M o",
1690
+ "[Mo +",
1691
+ "[Mo+ 6",
1692
+ "[Mo+6 ]",
1693
+ "[ M",
1694
+ "[M o",
1695
+ "[Mo +",
1696
+ "[Mo+ 4",
1697
+ "[Mo+4 ]",
1698
+ "[ H",
1699
+ "[H f",
1700
+ "[Hf ]",
1701
+ "[ U",
1702
+ "[U ]",
1703
+ "[ M",
1704
+ "[M g",
1705
+ "[Mg -",
1706
+ "[Mg- ]",
1707
+ "[ S",
1708
+ "[S e",
1709
+ "[Se H",
1710
+ "[SeH 2",
1711
+ "[SeH2 ]",
1712
+ "[ L",
1713
+ "[L u",
1714
+ "[Lu +",
1715
+ "[Lu+ 3",
1716
+ "[Lu+3 ]",
1717
+ "[ N",
1718
+ "[N i",
1719
+ "[Ni +",
1720
+ "[Ni+ 3",
1721
+ "[Ni+3 ]",
1722
+ "[ S",
1723
+ "[S m",
1724
+ "[Sm +",
1725
+ "[Sm+ 3",
1726
+ "[Sm+3 ]",
1727
+ "[ P",
1728
+ "[P b",
1729
+ "[Pb +",
1730
+ "[Pb+ 2",
1731
+ "[Pb+2 ]",
1732
+ "[ E",
1733
+ "[E u",
1734
+ "[Eu +",
1735
+ "[Eu+ 2",
1736
+ "[Eu+2 ]",
1737
+ "[ P",
1738
+ "[P t",
1739
+ "[Pt +",
1740
+ "[Pt+ 2",
1741
+ "[Pt+2 ]",
1742
+ "[ H",
1743
+ "[H o",
1744
+ "[Ho +",
1745
+ "[Ho+ 3",
1746
+ "[Ho+3 ]",
1747
+ "[ M",
1748
+ "[M g",
1749
+ "[Mg -",
1750
+ "[Mg- 2",
1751
+ "[Mg-2 ]",
1752
+ "[ Z",
1753
+ "[Z r",
1754
+ "[Zr ]",
1755
+ "[ N",
1756
+ "[N H",
1757
+ "[NH 2",
1758
+ "[NH2 ]",
1759
+ "[ O",
1760
+ "[O s",
1761
+ "[Os +",
1762
+ "[Os+ 4",
1763
+ "[Os+4 ]",
1764
+ "[ M",
1765
+ "[M o",
1766
+ "[Mo -",
1767
+ "[Mo- ]",
1768
+ "[ C",
1769
+ "[C o",
1770
+ "[Co +",
1771
+ "[Co+ 3",
1772
+ "[Co+3 ]",
1773
+ "[ R",
1774
+ "[R h",
1775
+ "[Rh ]",
1776
+ "[ T",
1777
+ "[T b",
1778
+ "[Tb +",
1779
+ "[Tb+ 3",
1780
+ "[Tb+3 ]",
1781
+ "[ C",
1782
+ "[C r",
1783
+ "[Cr +",
1784
+ "[Cr+ ]",
1785
+ "[ R",
1786
+ "[R h",
1787
+ "[Rh +",
1788
+ "[Rh+ ]",
1789
+ "[ R",
1790
+ "[R h",
1791
+ "[Rh +",
1792
+ "[Rh+ 3",
1793
+ "[Rh+3 ]",
1794
+ "[ R",
1795
+ "[R b",
1796
+ "[Rb +",
1797
+ "[Rb+ ]",
1798
+ "[ E",
1799
+ "[E r",
1800
+ "[Er +",
1801
+ "[Er+ 3",
1802
+ "[Er+3 ]",
1803
+ "[ R",
1804
+ "[R u",
1805
+ "[Ru +",
1806
+ "[Ru+ 3",
1807
+ "[Ru+3 ]",
1808
+ "[ A",
1809
+ "[A u",
1810
+ "[Au +",
1811
+ "[Au+ 3",
1812
+ "[Au+3 ]",
1813
+ "[ H",
1814
+ "[H +",
1815
+ "[H+ ]",
1816
+ "[ S",
1817
+ "[S c",
1818
+ "[Sc -",
1819
+ "[Sc- ]",
1820
+ "[ V",
1821
+ "[V -",
1822
+ "[V- ]",
1823
+ "[ O",
1824
+ "[O H",
1825
+ "[OH +",
1826
+ "[OH+ 2",
1827
+ "[OH+2 ]",
1828
+ "[ V",
1829
+ "[V +",
1830
+ "[V+ 3",
1831
+ "[V+3 ]",
1832
+ "[ A",
1833
+ "[A g",
1834
+ "[Ag ]",
1835
+ "[ D",
1836
+ "[D y",
1837
+ "[Dy +",
1838
+ "[Dy+ 2",
1839
+ "[Dy+2 ]",
1840
+ "[ E",
1841
+ "[E u",
1842
+ "[Eu +",
1843
+ "[Eu+ 3",
1844
+ "[Eu+3 ]",
1845
+ "[ I",
1846
+ "[I r",
1847
+ "[Ir ]",
1848
+ "[ B",
1849
+ "[B e",
1850
+ "[Be +",
1851
+ "[Be+ 2",
1852
+ "[Be+2 ]",
1853
+ "[ A",
1854
+ "[A s",
1855
+ "[As H",
1856
+ "[AsH 2",
1857
+ "[AsH2 ]",
1858
+ "[ H",
1859
+ "[H -",
1860
+ "[H- ]",
1861
+ "[ C",
1862
+ "[C r",
1863
+ "[Cr ]",
1864
+ "[ V",
1865
+ "[V +",
1866
+ "[V+ 2",
1867
+ "[V+2 ]",
1868
+ "[ S",
1869
+ "[S H",
1870
+ "[SH 2",
1871
+ "[SH2 ]",
1872
+ "[ T",
1873
+ "[T i",
1874
+ "[Ti +",
1875
+ "[Ti+ 4",
1876
+ "[Ti+4 ]",
1877
+ "[ C",
1878
+ "[C H",
1879
+ "[CH 3",
1880
+ "[CH3 ]",
1881
+ "[ P",
1882
+ "[P H",
1883
+ "[PH 2",
1884
+ "[PH2 ]",
1885
+ "[ T",
1886
+ "[T b",
1887
+ "[Tb ]",
1888
+ "[ C",
1889
+ "[C +",
1890
+ "[C+ 2",
1891
+ "[C+2 ]",
1892
+ "[ P",
1893
+ "[P b",
1894
+ "[Pb ]",
1895
+ "[ P",
1896
+ "[P r",
1897
+ "[Pr +",
1898
+ "[Pr+ 3",
1899
+ "[Pr+3 ]",
1900
+ "[ O",
1901
+ "[O s",
1902
+ "[Os +",
1903
+ "[Os+ 3",
1904
+ "[Os+3 ]",
1905
+ "[ P",
1906
+ "[P r",
1907
+ "[Pr ]",
1908
+ "[ C",
1909
+ "[C u",
1910
+ "[Cu -",
1911
+ "[Cu- 2",
1912
+ "[Cu-2 ]",
1913
+ "[ O",
1914
+ "[O +",
1915
+ "[O+ 2",
1916
+ "[O+2 ]",
1917
+ "[ I",
1918
+ "[I H",
1919
+ "[IH ]",
1920
+ "[ P",
1921
+ "[P t",
1922
+ "[Pt -",
1923
+ "[Pt- ]",
1924
+ "[ Y",
1925
+ "[Y b",
1926
+ "[Yb ]",
1927
+ "[ I",
1928
+ "[I r",
1929
+ "[Ir +",
1930
+ "[Ir+ 4",
1931
+ "[Ir+4 ]",
1932
+ "[ P",
1933
+ "[P -",
1934
+ "[P- 2",
1935
+ "[P-2 ]",
1936
+ "[ T",
1937
+ "[T i",
1938
+ "[Ti ]",
1939
+ "[ N",
1940
+ "[N d",
1941
+ "[Nd +",
1942
+ "[Nd+ 3",
1943
+ "[Nd+3 ]",
1944
+ "[ A",
1945
+ "[A l",
1946
+ "[Al +",
1947
+ "[Al+ 3",
1948
+ "[Al+3 ]",
1949
+ "[ H",
1950
+ "[H g",
1951
+ "[Hg -",
1952
+ "[Hg- 2",
1953
+ "[Hg-2 ]",
1954
+ "[ I",
1955
+ "[I n",
1956
+ "[In ]",
1957
+ "[ F",
1958
+ "[F e",
1959
+ "[Fe +",
1960
+ "[Fe+ ]",
1961
+ "[ R",
1962
+ "[R u",
1963
+ "[Ru -",
1964
+ "[Ru- 2",
1965
+ "[Ru-2 ]",
1966
+ "[ I",
1967
+ "[I r",
1968
+ "[Ir +",
1969
+ "[Ir+ ]",
1970
+ "[ R",
1971
+ "[R h",
1972
+ "[Rh +",
1973
+ "[Rh+ 2",
1974
+ "[Rh+2 ]",
1975
+ "[ N",
1976
+ "[N a",
1977
+ "[Na H",
1978
+ "[NaH ]",
1979
+ "[ M",
1980
+ "[M g",
1981
+ "[Mg H",
1982
+ "[MgH 2",
1983
+ "[MgH2 ]",
1984
+ "[ A",
1985
+ "[A g",
1986
+ "[Ag -",
1987
+ "[Ag- 4",
1988
+ "[Ag-4 ]",
1989
+ "[ C",
1990
+ "[C l",
1991
+ "[Cl +",
1992
+ "[Cl+ ]",
1993
+ "[ Z",
1994
+ "[Z n",
1995
+ "[Zn -",
1996
+ "[Zn- 2",
1997
+ "[Zn-2 ]",
1998
+ "[ H",
1999
+ "[H H",
2000
+ "[HH ]",
2001
+ "[ H",
2002
+ "[H g",
2003
+ "[Hg +",
2004
+ "[Hg+ ]",
2005
+ "[ Y",
2006
+ "[Y +",
2007
+ "[Y+ 3",
2008
+ "[Y+3 ]",
2009
+ "[ P",
2010
+ "[P b",
2011
+ "[Pb +",
2012
+ "[Pb+ ]",
2013
+ "[ G",
2014
+ "[G d",
2015
+ "[Gd +",
2016
+ "[Gd+ 3",
2017
+ "[Gd+3 ]",
2018
+ "[ P",
2019
+ "[P t",
2020
+ "[Pt +",
2021
+ "[Pt+ 4",
2022
+ "[Pt+4 ]",
2023
+ "c c",
2024
+ "O )",
2025
+ "C C",
2026
+ "C (",
2027
+ "= O)",
2028
+ "c 1",
2029
+ "c (",
2030
+ "c 2",
2031
+ "( =O)",
2032
+ "C )",
2033
+ "C( =O)",
2034
+ "c1 cc",
2035
+ "c 3",
2036
+ "( O)",
2037
+ "c n",
2038
+ "C 1",
2039
+ "c2 cc",
2040
+ ") cc",
2041
+ "C O",
2042
+ "CC CC",
2043
+ "C( O)",
2044
+ "P (=O)",
2045
+ "C 2",
2046
+ "P(=O) (O)",
2047
+ "( C)",
2048
+ "c1 n",
2049
+ "F )",
2050
+ "c1cc c(",
2051
+ "C(=O) N",
2052
+ "C N",
2053
+ "O =",
2054
+ "O CC",
2055
+ "c3 cc",
2056
+ "2 )",
2057
+ "N )",
2058
+ "O C(",
2059
+ "[ n",
2060
+ "H ]",
2061
+ "c1cc cc",
2062
+ "[n H]",
2063
+ "O P(=O)(O)",
2064
+ "C l",
2065
+ "N C(=O)",
2066
+ "c 4",
2067
+ "3 )",
2068
+ "c2cc cc",
2069
+ ")cc 1",
2070
+ "n 1",
2071
+ "+ ]",
2072
+ "2 ]",
2073
+ "CC N",
2074
+ "+ 2]",
2075
+ "CC 1",
2076
+ "C( C)",
2077
+ "CO P(=O)(O)",
2078
+ "O) C(O)",
2079
+ "- ]",
2080
+ "c( =O)",
2081
+ "c1n cn",
2082
+ "C 3",
2083
+ "C =",
2084
+ "c2cc c(",
2085
+ "[ O",
2086
+ "[O -]",
2087
+ "CC (=O)",
2088
+ "n c(",
2089
+ "c1cccc c1",
2090
+ "c2cccc c2",
2091
+ "[ N",
2092
+ "S (=O)",
2093
+ "c3cc cc",
2094
+ "( F)",
2095
+ "S(=O) (=O)",
2096
+ "n 2",
2097
+ "OC( COP(=O)(O)",
2098
+ "n cn",
2099
+ "c2 c(",
2100
+ "CCN (",
2101
+ "CC (C)",
2102
+ "C1 O",
2103
+ "c 5",
2104
+ "CC (",
2105
+ "cc (",
2106
+ "4 )",
2107
+ "Cl )",
2108
+ "[O-] )",
2109
+ "c3cccc c3",
2110
+ "O= C(",
2111
+ "c1cc (",
2112
+ "cc 1",
2113
+ "OCC OCC",
2114
+ "OC(COP(=O)(O) OP(=O)(O)",
2115
+ "[ M",
2116
+ "c4 cc",
2117
+ "O C)",
2118
+ "O= C(O)",
2119
+ "c1ncn c2",
2120
+ "c3cc c(",
2121
+ "2 C1",
2122
+ "N c1ncnc2",
2123
+ "C c1ccc(",
2124
+ "C(=O) O)",
2125
+ "C( F)",
2126
+ "CCCC CCCC",
2127
+ "C2 O)",
2128
+ "c2 )",
2129
+ "CC (O)",
2130
+ "c(=O) [nH]",
2131
+ "n (",
2132
+ "CC O",
2133
+ "c1ncn 2C1",
2134
+ "c( N)",
2135
+ "O)C(O) C1O",
2136
+ "CC(=O) N",
2137
+ "F )cc",
2138
+ "c( -",
2139
+ "C(F) (F)",
2140
+ "Nc1ncnc2 c1ncn2C1",
2141
+ ") N",
2142
+ "c2 n",
2143
+ "CC CN",
2144
+ "c( C)",
2145
+ "C( C",
2146
+ "[N +]",
2147
+ "C( N)",
2148
+ "( [O-])",
2149
+ "[M g",
2150
+ "O)C(O) C2O)",
2151
+ "CC 2",
2152
+ "c1cccc (",
2153
+ "C(=O) O",
2154
+ "[Mg +2]",
2155
+ "C 4",
2156
+ "= O",
2157
+ "c( N",
2158
+ "CO c1ccc(",
2159
+ "n +2]",
2160
+ "c2ccccc2 )",
2161
+ "[ C",
2162
+ "Cl )cc",
2163
+ "[N a",
2164
+ "[Na +]",
2165
+ "C c1cc",
2166
+ "N c1n",
2167
+ "B r",
2168
+ "2 )cc1",
2169
+ "c2cc (",
2170
+ "CC OCC",
2171
+ "CN (",
2172
+ "C( =",
2173
+ "n 3",
2174
+ "c(N) ncn",
2175
+ "C S",
2176
+ "C c1",
2177
+ "c s",
2178
+ "c1 )",
2179
+ "O C",
2180
+ "N 2",
2181
+ "CC C(",
2182
+ "C c1n",
2183
+ "cc cc",
2184
+ "C2 OC(COP(=O)(O)OP(=O)(O)",
2185
+ "c(=O)[nH] 1",
2186
+ "c1 2",
2187
+ "Nc1ncnc2c1ncn2C1 OC(COP(=O)(O)OP(=O)(O)",
2188
+ "c2 nc(",
2189
+ "c3 )",
2190
+ "a +2]",
2191
+ "[C a+2]",
2192
+ "c( O)",
2193
+ "C(O) C(O)",
2194
+ "N =",
2195
+ "C #",
2196
+ "n 4",
2197
+ "(C) C)",
2198
+ "1 )",
2199
+ "[ Z",
2200
+ "[Z n+2]",
2201
+ "2) c1",
2202
+ "O=C( N",
2203
+ "= N",
2204
+ "c2 c1",
2205
+ "CN 1",
2206
+ "c4cc cc",
2207
+ "OP(=O)(O) OCC",
2208
+ "( C",
2209
+ "n cc",
2210
+ "OCCOCC OCCOCC",
2211
+ "C( CC",
2212
+ "N 1",
2213
+ "[N+] (=O)",
2214
+ "c o",
2215
+ "CC =",
2216
+ "c3ccccc3 )",
2217
+ "C n1",
2218
+ "CC C2",
2219
+ "C(F)(F) F)",
2220
+ "c1ccccc1 )",
2221
+ "[ F",
2222
+ "[F e",
2223
+ "c3 c(",
2224
+ "cn c5",
2225
+ "CC 2)",
2226
+ "CC 3",
2227
+ "C2 )",
2228
+ "OC( n4",
2229
+ "c5 4)",
2230
+ "3 OC(n4",
2231
+ "3OC(n4 cnc5",
2232
+ "n c2",
2233
+ "O)C(O)C2O) c(=O)[nH]1",
2234
+ "OP(=O)(O) O)",
2235
+ "c [nH]",
2236
+ "[n +]",
2237
+ "c4cccc c4",
2238
+ "CO C(=O)",
2239
+ "Nc1n c2c(",
2240
+ "S(=O)(=O) N",
2241
+ "ncn 2",
2242
+ "CC C1",
2243
+ "cc 2",
2244
+ "cn c3",
2245
+ "c(N)ncn c54)",
2246
+ "3OC(n4cnc5 c(N)ncnc54)",
2247
+ "c2cccc (",
2248
+ "n c3",
2249
+ "C(O) C3",
2250
+ "n 2)",
2251
+ "[Fe ]"
2252
+ ]
2253
+ }
2254
+ }
smiles/tokenizer_config.json ADDED
@@ -0,0 +1,54 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
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