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README.md
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@@ -102,12 +102,13 @@ Enzymes catalyzing more than one reaction appear in multiple enzyme-reaction pai
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- **General descriptors**
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| Method | Natural | Generated
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| :--- | :----: | ---: |
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| **IUPRED3 (ordered)** | 99.9% | 99.9% |
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| **ESMFold (avg. plddt)** | 85.03 |
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| **FlDPnn** | wip | 0.0929 |
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- **PGP pipeline** [(see GitHub)](https://github.com/hefeda/PGP)
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| Syntax | Identity | Alignment length |
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| :--- | :----: | ---: |
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| **
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| **Selection** <sup>[1]|</sup> 57.20% | 338.1 |
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<sup>[1]|</sup> We excluded sequences with %identities ≥ 70% and pLDDTs < 60%.
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## **How to generate from REXzyme**
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REXzyme can be used with the HuggingFace transformer python package.
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<br/><br/>
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- **General descriptors**
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| Method | Natural | Generated <sup>[1]</sup> |
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| :--- | :----: | ---: |
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| **IUPRED3 (ordered)** | 99.9% | 99.9% |
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| **ESMFold (avg. plddt)** | 85.03 | 79.82 |
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| **FlDPnn** | wip | 0.0929 |
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| 110 |
<br/><br/>
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| 111 |
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<sup>[1]|</sup> We excluded sequences with %identities ≥ 70% and pLDDTs < 60%.
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| 112 |
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- **PGP pipeline** [(see GitHub)](https://github.com/hefeda/PGP)
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| 114 |
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| 127 |
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| Syntax | Identity | Alignment length |
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| 129 |
| :--- | :----: | ---: |
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| 130 |
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| **Selection** 57.20% | 338.1 |
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<br/><br/>
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## **How to generate from REXzyme**
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REXzyme can be used with the HuggingFace transformer python package.
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