chromatography-rt-prediction / artifacts /matched_lab_encoding /identity_grouped /repeat_1 /metrics.json
| { | |
| "task": "canonical_grouped", | |
| "task_label": "Identity-grouped", | |
| "repeat": 1, | |
| "outer_seed": 123456, | |
| "device": "cuda", | |
| "comparison": "Same FPNN trunk; learned 64-dimensional lab embedding versus fixed 23-dimensional one-hot lab vector.", | |
| "fingerprint": { | |
| "radius": 2, | |
| "n_bits": 2048, | |
| "use_chirality": true | |
| }, | |
| "group_column": "structure_group", | |
| "n_test_rows": 391, | |
| "n_test_groups": 136, | |
| "model_config": { | |
| "hidden_dims": [ | |
| 768, | |
| 384, | |
| 192, | |
| 96 | |
| ], | |
| "dropout": 0.15, | |
| "use_batch_norm": true, | |
| "num_labs": null, | |
| "lab_embed_dim": 64, | |
| "input_dropout": 0.1, | |
| "input_dim": 2071 | |
| }, | |
| "training_config": { | |
| "epochs": 600, | |
| "lr": 0.0015, | |
| "weight_decay": 1e-05, | |
| "patience": 60, | |
| "warmup_epochs": 15, | |
| "batch_size": 128, | |
| "gradient_clip": 1.0 | |
| }, | |
| "fold_metrics": [ | |
| { | |
| "fold": 0, | |
| "r2": 0.9327574968338013, | |
| "mae": 0.6084006428718567, | |
| "best_epoch": 53 | |
| }, | |
| { | |
| "fold": 1, | |
| "r2": 0.9278197288513184, | |
| "mae": 0.5879927277565002, | |
| "best_epoch": 128 | |
| }, | |
| { | |
| "fold": 2, | |
| "r2": 0.9509548544883728, | |
| "mae": 0.5971776247024536, | |
| "best_epoch": 97 | |
| }, | |
| { | |
| "fold": 3, | |
| "r2": 0.920246422290802, | |
| "mae": 0.6352708339691162, | |
| "best_epoch": 90 | |
| }, | |
| { | |
| "fold": 4, | |
| "r2": 0.947064220905304, | |
| "mae": 0.5868452191352844, | |
| "best_epoch": 74 | |
| }, | |
| { | |
| "fold": 5, | |
| "r2": 0.9341920614242554, | |
| "mae": 0.653784453868866, | |
| "best_epoch": 65 | |
| } | |
| ], | |
| "training_seconds": 57.26117680000016, | |
| "learned_embedding": { | |
| "r2": 0.9580249515779165, | |
| "mae": 0.5117067615817488, | |
| "rmse": 0.8609177142848459 | |
| }, | |
| "one_hot": { | |
| "r2": 0.9512134790420532, | |
| "mae": 0.5941152572631836, | |
| "rmse": 0.9281453396915735 | |
| } | |
| } |