chromatography-rt-prediction / artifacts /matched_lab_encoding /identity_grouped /repeat_2 /metrics.json
| { | |
| "task": "canonical_grouped", | |
| "task_label": "Identity-grouped", | |
| "repeat": 2, | |
| "outer_seed": 123457, | |
| "device": "cuda", | |
| "comparison": "Same FPNN trunk; learned 64-dimensional lab embedding versus fixed 23-dimensional one-hot lab vector.", | |
| "fingerprint": { | |
| "radius": 2, | |
| "n_bits": 2048, | |
| "use_chirality": true | |
| }, | |
| "group_column": "structure_group", | |
| "n_test_rows": 402, | |
| "n_test_groups": 136, | |
| "model_config": { | |
| "hidden_dims": [ | |
| 768, | |
| 384, | |
| 192, | |
| 96 | |
| ], | |
| "dropout": 0.15, | |
| "use_batch_norm": true, | |
| "num_labs": null, | |
| "lab_embed_dim": 64, | |
| "input_dropout": 0.1, | |
| "input_dim": 2071 | |
| }, | |
| "training_config": { | |
| "epochs": 600, | |
| "lr": 0.0015, | |
| "weight_decay": 1e-05, | |
| "patience": 60, | |
| "warmup_epochs": 15, | |
| "batch_size": 128, | |
| "gradient_clip": 1.0 | |
| }, | |
| "fold_metrics": [ | |
| { | |
| "fold": 0, | |
| "r2": 0.9328085780143738, | |
| "mae": 0.6459893584251404, | |
| "best_epoch": 199 | |
| }, | |
| { | |
| "fold": 1, | |
| "r2": 0.9258730411529541, | |
| "mae": 0.6507390141487122, | |
| "best_epoch": 57 | |
| }, | |
| { | |
| "fold": 2, | |
| "r2": 0.9135346412658691, | |
| "mae": 0.67669677734375, | |
| "best_epoch": 124 | |
| }, | |
| { | |
| "fold": 3, | |
| "r2": 0.9282681345939636, | |
| "mae": 0.6479111909866333, | |
| "best_epoch": 121 | |
| }, | |
| { | |
| "fold": 4, | |
| "r2": 0.9560219645500183, | |
| "mae": 0.5267617702484131, | |
| "best_epoch": 138 | |
| }, | |
| { | |
| "fold": 5, | |
| "r2": 0.9440622925758362, | |
| "mae": 0.5933816432952881, | |
| "best_epoch": 72 | |
| } | |
| ], | |
| "training_seconds": 69.69758929999989, | |
| "learned_embedding": { | |
| "r2": 0.9618631030749805, | |
| "mae": 0.44231882816510826, | |
| "rmse": 0.7107797814145037 | |
| }, | |
| "one_hot": { | |
| "r2": 0.9420136213302612, | |
| "mae": 0.5295878648757935, | |
| "rmse": 0.8764465840172277 | |
| } | |
| } |