chromatography-rt-prediction / artifacts /matched_lab_encoding /identity_grouped /repeat_3 /metrics.json
| { | |
| "task": "canonical_grouped", | |
| "task_label": "Identity-grouped", | |
| "repeat": 3, | |
| "outer_seed": 123458, | |
| "device": "cuda", | |
| "comparison": "Same FPNN trunk; learned 64-dimensional lab embedding versus fixed 23-dimensional one-hot lab vector.", | |
| "fingerprint": { | |
| "radius": 2, | |
| "n_bits": 2048, | |
| "use_chirality": true | |
| }, | |
| "group_column": "structure_group", | |
| "n_test_rows": 326, | |
| "n_test_groups": 135, | |
| "model_config": { | |
| "hidden_dims": [ | |
| 768, | |
| 384, | |
| 192, | |
| 96 | |
| ], | |
| "dropout": 0.15, | |
| "use_batch_norm": true, | |
| "num_labs": null, | |
| "lab_embed_dim": 64, | |
| "input_dropout": 0.1, | |
| "input_dim": 2071 | |
| }, | |
| "training_config": { | |
| "epochs": 600, | |
| "lr": 0.0015, | |
| "weight_decay": 1e-05, | |
| "patience": 60, | |
| "warmup_epochs": 15, | |
| "batch_size": 128, | |
| "gradient_clip": 1.0 | |
| }, | |
| "fold_metrics": [ | |
| { | |
| "fold": 0, | |
| "r2": 0.9407025575637817, | |
| "mae": 0.5997390747070312, | |
| "best_epoch": 176 | |
| }, | |
| { | |
| "fold": 1, | |
| "r2": 0.9265996813774109, | |
| "mae": 0.6663148999214172, | |
| "best_epoch": 46 | |
| }, | |
| { | |
| "fold": 2, | |
| "r2": 0.9457321763038635, | |
| "mae": 0.6014467477798462, | |
| "best_epoch": 47 | |
| }, | |
| { | |
| "fold": 3, | |
| "r2": 0.9347715377807617, | |
| "mae": 0.6011309623718262, | |
| "best_epoch": 67 | |
| }, | |
| { | |
| "fold": 4, | |
| "r2": 0.9557918310165405, | |
| "mae": 0.5714874267578125, | |
| "best_epoch": 145 | |
| }, | |
| { | |
| "fold": 5, | |
| "r2": 0.9346057772636414, | |
| "mae": 0.564378559589386, | |
| "best_epoch": 76 | |
| } | |
| ], | |
| "training_seconds": 60.322605000000294, | |
| "learned_embedding": { | |
| "r2": 0.9526996944186176, | |
| "mae": 0.4836920538640403, | |
| "rmse": 0.7747752284538142 | |
| }, | |
| "one_hot": { | |
| "r2": 0.920945405960083, | |
| "mae": 0.6234654784202576, | |
| "rmse": 1.0016298720720824 | |
| } | |
| } |