chromatography-rt-prediction / artifacts /matched_lab_encoding /scaffold_aware /repeat_1 /metrics.json
| { | |
| "task": "scaffold_aware", | |
| "task_label": "Scaffold-aware", | |
| "repeat": 1, | |
| "outer_seed": 123456, | |
| "device": "cuda", | |
| "comparison": "Same FPNN trunk; learned 64-dimensional lab embedding versus fixed 23-dimensional one-hot lab vector.", | |
| "fingerprint": { | |
| "radius": 2, | |
| "n_bits": 2048, | |
| "use_chirality": true | |
| }, | |
| "group_column": "scaffold_component_group", | |
| "n_test_rows": 755, | |
| "n_test_groups": 72, | |
| "model_config": { | |
| "hidden_dims": [ | |
| 768, | |
| 384, | |
| 192, | |
| 96 | |
| ], | |
| "dropout": 0.15, | |
| "use_batch_norm": true, | |
| "num_labs": null, | |
| "lab_embed_dim": 64, | |
| "input_dropout": 0.1, | |
| "input_dim": 2071 | |
| }, | |
| "training_config": { | |
| "epochs": 600, | |
| "lr": 0.0015, | |
| "weight_decay": 1e-05, | |
| "patience": 60, | |
| "warmup_epochs": 15, | |
| "batch_size": 128, | |
| "gradient_clip": 1.0 | |
| }, | |
| "fold_metrics": [ | |
| { | |
| "fold": 0, | |
| "r2": 0.9241467714309692, | |
| "mae": 0.9087919592857361, | |
| "best_epoch": 31 | |
| }, | |
| { | |
| "fold": 1, | |
| "r2": 0.764356255531311, | |
| "mae": 1.0423704385757446, | |
| "best_epoch": 18 | |
| }, | |
| { | |
| "fold": 2, | |
| "r2": 0.8842424750328064, | |
| "mae": 0.9150758385658264, | |
| "best_epoch": 50 | |
| }, | |
| { | |
| "fold": 3, | |
| "r2": 0.9048946499824524, | |
| "mae": 0.9118162393569946, | |
| "best_epoch": 31 | |
| }, | |
| { | |
| "fold": 4, | |
| "r2": 0.8138851523399353, | |
| "mae": 0.8143661618232727, | |
| "best_epoch": 22 | |
| }, | |
| { | |
| "fold": 5, | |
| "r2": 0.8660207986831665, | |
| "mae": 0.814559280872345, | |
| "best_epoch": 54 | |
| } | |
| ], | |
| "training_seconds": 33.19848270000011, | |
| "learned_embedding": { | |
| "r2": 0.8908691742940704, | |
| "mae": 0.7771648560748977, | |
| "rmse": 1.1756462251708724 | |
| }, | |
| "one_hot": { | |
| "r2": 0.8785049319267273, | |
| "mae": 0.839631199836731, | |
| "rmse": 1.2404585988563603 | |
| } | |
| } |