chromatography-rt-prediction / artifacts /matched_lab_encoding /scaffold_aware /repeat_2 /metrics.json
| { | |
| "task": "scaffold_aware", | |
| "task_label": "Scaffold-aware", | |
| "repeat": 2, | |
| "outer_seed": 123457, | |
| "device": "cuda", | |
| "comparison": "Same FPNN trunk; learned 64-dimensional lab embedding versus fixed 23-dimensional one-hot lab vector.", | |
| "fingerprint": { | |
| "radius": 2, | |
| "n_bits": 2048, | |
| "use_chirality": true | |
| }, | |
| "group_column": "scaffold_component_group", | |
| "n_test_rows": 755, | |
| "n_test_groups": 72, | |
| "model_config": { | |
| "hidden_dims": [ | |
| 768, | |
| 384, | |
| 192, | |
| 96 | |
| ], | |
| "dropout": 0.15, | |
| "use_batch_norm": true, | |
| "num_labs": null, | |
| "lab_embed_dim": 64, | |
| "input_dropout": 0.1, | |
| "input_dim": 2071 | |
| }, | |
| "training_config": { | |
| "epochs": 600, | |
| "lr": 0.0015, | |
| "weight_decay": 1e-05, | |
| "patience": 60, | |
| "warmup_epochs": 15, | |
| "batch_size": 128, | |
| "gradient_clip": 1.0 | |
| }, | |
| "fold_metrics": [ | |
| { | |
| "fold": 0, | |
| "r2": 0.8762741684913635, | |
| "mae": 0.8493852019309998, | |
| "best_epoch": 109 | |
| }, | |
| { | |
| "fold": 1, | |
| "r2": 0.9313138723373413, | |
| "mae": 0.8104121685028076, | |
| "best_epoch": 50 | |
| }, | |
| { | |
| "fold": 2, | |
| "r2": 0.8886343836784363, | |
| "mae": 1.0469534397125244, | |
| "best_epoch": 34 | |
| }, | |
| { | |
| "fold": 3, | |
| "r2": 0.7677996754646301, | |
| "mae": 0.9751142263412476, | |
| "best_epoch": 159 | |
| }, | |
| { | |
| "fold": 4, | |
| "r2": 0.899413526058197, | |
| "mae": 0.7741118669509888, | |
| "best_epoch": 74 | |
| }, | |
| { | |
| "fold": 5, | |
| "r2": 0.9078876972198486, | |
| "mae": 0.8852234482765198, | |
| "best_epoch": 19 | |
| } | |
| ], | |
| "training_seconds": 46.59922460000007, | |
| "learned_embedding": { | |
| "r2": 0.868357250484825, | |
| "mae": 0.8274407194900248, | |
| "rmse": 1.1996774440883131 | |
| }, | |
| "one_hot": { | |
| "r2": 0.8860554099082947, | |
| "mae": 0.7842666506767273, | |
| "rmse": 1.1161252286750354 | |
| } | |
| } |