AI4deeperScience's picture
Add files using upload-large-folder tool
6cf9dac verified
Raw
History Blame Contribute Delete
3.13 kB
{
"seed": 123457,
"device": "cuda",
"smoke_only": false,
"smoke_only_untrained_test_lab_indices": [],
"descriptor_features_predeclared": [
"LogP",
"BertzCT",
"MolMR",
"NumAromaticRings",
"HeavyAtomCount"
],
"neural_config": {
"base_models": [
"gat",
"gcn",
"fpnn"
],
"gat": {
"model": {
"graph_model_kwargs": {
"input_dim": 8,
"hidden_dim": 320,
"num_layers": 4,
"dropout": 0.18,
"num_labs": 23,
"lab_embed_dim": 32
},
"graph_feature_dim": 320,
"descriptor_hidden_dims": [
160,
80
],
"final_hidden_dims": [
160,
80
],
"dropout": 0.2,
"use_batch_norm": true
},
"training": {
"epochs": 600,
"lr": 0.0003,
"weight_decay": 5e-06,
"patience": 60,
"plateau_patience": 40,
"factor": 0.6,
"min_lr": 1e-06,
"batch_size": 32,
"gradient_clip": 1.0
}
},
"gcn": {
"model": {
"graph_model_kwargs": {
"input_dim": 8,
"hidden_dim": 256,
"num_layers": 5,
"dropout": 0.2,
"num_labs": 23,
"lab_embed_dim": 32
},
"graph_feature_dim": 256,
"descriptor_hidden_dims": [
128,
64
],
"final_hidden_dims": [
128,
64
],
"dropout": 0.2,
"use_batch_norm": true
},
"training": {
"epochs": 600,
"lr": 0.0004,
"weight_decay": 1e-05,
"patience": 60,
"plateau_patience": 35,
"factor": 0.6,
"min_lr": 1e-06,
"batch_size": 32,
"gradient_clip": 1.0
}
},
"fpnn": {
"model": {
"input_dim": 2048,
"hidden_dims": [
768,
384,
192,
96
],
"dropout": 0.15,
"use_batch_norm": true,
"num_labs": 23,
"lab_embed_dim": 64,
"input_dropout": 0.1
},
"training": {
"epochs": 600,
"lr": 0.0015,
"weight_decay": 1e-05,
"patience": 60,
"warmup_epochs": 15,
"batch_size": 128,
"gradient_clip": 1.0
}
},
"meta_learner": {
"n_estimators": 800,
"max_depth": 12,
"min_samples_split": 5,
"min_samples_leaf": 3,
"max_features": 0.8,
"bootstrap": true,
"max_samples": 0.85,
"n_jobs": -1
},
"device": "auto"
},
"parameter_counts": {
"gat": 505377,
"gcn": 391137,
"fpnn": 2014977
},
"training_seconds_by_model": {
"gat": 2284.689162999988,
"gcn": 2203.2741107999973,
"fpnn": 128.70475809999334
},
"total_run_seconds": 4665.188108800001,
"gpu_name": "NVIDIA GeForce RTX 4080",
"test_set_used_for_selection": false,
"checkpoint_root": "checkpoints"
}