Cross-link Space, model and dataset; state the model's actual role in the demo
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README.md
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# MEDTRACE brain tumour segmentation (SegResNet)
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3D tumour compartment segmentation from four co-registered MRI sequences. Trained on BraTS 2023 GLI and
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> [!WARNING]
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> **Research prototype. Not a medical device.** Not for diagnosis, treatment planning, or any clinical decision. Not clinically validated. It has been measured against one annotation protocol on one dataset, which is agreement, not clinical accuracy.
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## A note on how MEDTRACE uses this
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## Training data and required citations
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# MEDTRACE brain tumour segmentation (SegResNet)
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3D tumour compartment segmentation from four co-registered MRI sequences. Trained on BraTS 2023 GLI and published as part of the [MEDTRACE](https://huggingface.co/spaces/AIOmarRehan/medtrace) longitudinal workstation, which deliberately **does not** measure with it. [Why](#a-note-on-how-medtrace-uses-this).
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> [!WARNING]
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> **Research prototype. Not a medical device.** Not for diagnosis, treatment planning, or any clinical decision. Not clinically validated. It has been measured against one annotation protocol on one dataset, which is agreement, not clinical accuracy.
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## A note on how MEDTRACE uses this
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MEDTRACE does **not** measure with this model, hosted or local. The [hosted demo](https://huggingface.co/spaces/AIOmarRehan/medtrace) reads the expert-corrected segmentations that ship with [RHUH-GBM](https://huggingface.co/datasets/AIOmarRehan/medtrace-rhuh-gbm-derived); the local build reads DeepBraTumIA's masks on LUMIERE.
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The reason is measured rather than cautious. Run against DeepBraTumIA on 12 randomly chosen LUMIERE studies, this model reaches 0.923 median Dice on whole tumour but **0.486 on enhancing tumour, below 0.5 in 6 of the 12** — and enhancing tumour is the single compartment MEDTRACE reports change on. Split by how much enhancement is present, the weakness is specific rather than uniform: 0.861 median Dice where enhancement is bulky (>= 5 cm3, n=5) against 0.193 where it is small (< 5 cm3, n=7), overestimating volume roughly fourfold in the small group. Post-operative brains are outside this model's training distribution, and on small lesions a few tenths of a cm3 is what decides whether progression is reported.
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Publishing the model and measuring with it are separate decisions. Only the first is justified by the numbers above.
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## Training data and required citations
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