Update README.md

README.md

@@ -1,57 +1,40 @@
 This is a segmentation model trained for pancretic lesion segmentation. It was trained with the Report Supervision ([R-Super](https://github.com/MrGiovanni/R-Super), MICCAI 2025, best paper award finalist) training methodology, which **learns tumor segmentation directly from radiology reports** (through new loss functions).
-This checkpoint was trained with **1,851 pancreatic lesion reports** from the Merlin dataset, plus **344 pancreatic lesion masks** from AbdomenAtlas 3.0 Beta.
+This checkpoint was trained with public data: **1.8K pancreatic lesion reports** from the [Merlin](https://stanfordaimi.azurewebsites.net/datasets?domain=BODY) dataset, plus **0.9K pancreatic lesion masks** from [PanTS](https://github.com/MrGiovanni/PanTS).
 
-Performance improvements are expected for models trained on the released version of AbdomenAtlas 3.0. For the ofifical release of AbdomenAtlas 3.0 (ICCV 2025), please check our GitHub: https://github.com/MrGiovanni/RadGPT.
 The AI model architecture is MedFormer, its training methology is Report Supervision (R-Super).
 
-Training and inference code: https://github.com/MrGiovanni/R-Super
+**Training and inference code: https://github.com/MrGiovanni/R-Super**
 
 <details>
   <summary>Label order</summary>
   
-```python
-['adrenal_gland_left',
- 'adrenal_gland_right',
- 'aorta',
- 'bladder',
- 'celiac_trunk',
- 'colon',
- 'common_bile_duct',
- 'duodenum',
- 'esophagus',
- 'femur_left',
- 'femur_right',
- 'gall_bladder',
- 'hepatic_vessel',
- 'intestine',
- 'kidney_left',
- 'kidney_lesion',
- 'kidney_right',
- 'liver',
- 'liver_lesion',
- 'liver_segment_1',
- 'liver_segment_2',
- 'liver_segment_3',
- 'liver_segment_4',
- 'liver_segment_5',
- 'liver_segment_6',
- 'liver_segment_7',
- 'liver_segment_8',
- 'lung_left',
- 'lung_right',
- 'pancreas',
- 'pancreas_body',
- 'pancreas_head',
- 'pancreas_tail',
- 'pancreatic_lesion',
- 'portal_vein_and_splenic_vein',
- 'postcava',
- 'prostate',
- 'rectum',
- 'spleen',
- 'stomach',
- 'superior_mesenteric_artery',
- 'veins']
+```yaml
+- adrenal_gland_left
+- adrenal_gland_right
+- aorta
+- bladder
+- colon
+- common_bile_duct
+- duodenum
+- femur_left
+- femur_right
+- gall_bladder
+- kidney_left
+- kidney_right
+- liver
+- lung_left
+- lung_right
+- pancreas
+- pancreas_body
+- pancreas_head
+- pancreas_tail
+- pancreatic_lesion
+- postcava
+- prostate
+- spleen
+- stomach
+- superior_mesenteric_artery
+- veins
 ```
 </details>
 
@@ -84,11 +67,20 @@ If you use this data, please cite the 3 paper below:
   year={2025}
 }
 
-@article{bassi2025radgpt,
-  title={Radgpt: Constructing 3d image-text tumor datasets},
-  author={Bassi, Pedro RAS and Yavuz, Mehmet Can and Wang, Kang and Chen, Xiaoxi and Li, Wenxuan and Decherchi, Sergio and Cavalli, Andrea and Yang, Yang and Yuille, Alan and Zhou, Zongwei},
-  journal={arXiv preprint arXiv:2501.04678},
-  year={2025}
+@article{li2025pants,
+  title={PanTS: The Pancreatic Tumor Segmentation Dataset},
+  author={Li, Wenxuan and Zhou, Xinze and Chen, Qi and Lin, Tianyu and Bassi, Pedro RAS and Plotka, Szymon and Cwikla, Jaroslaw B and Chen, Xiaoxi and Ye, Chen and Zhu, Zheren and others},
+  journal={arXiv preprint arXiv:2507.01291},
+  year={2025},
+  url={https://github.com/MrGiovanni/PanTS}
+}
+
+@article{blankemeier2024merlin,
+  title={Merlin: A vision language foundation model for 3d computed tomography},
+  author={Blankemeier, Louis and Cohen, Joseph Paul and Kumar, Ashwin and Van Veen, Dave and Gardezi, Syed Jamal Safdar and Paschali, Magdalini and Chen, Zhihong and Delbrouck, Jean-Benoit and Reis, Eduardo and Truyts, Cesar and others},
+  journal={Research Square},
+  pages={rs--3},
+  year={2024}
 }
 
 ```