cell5_quad_vae_geometric_analysis.py

"""
Cell 5: Multi-VAE Geometric Comparison
========================================
Run after Cells 1-4. Reuses existing pipeline.

Processes 4 VAEs sequentially:
  SD 1.5  → 4ch  × 64×64   (512px input)
  SDXL    → 4ch  × 128×128  (1024px input)
  Flux.1  → 16ch × 128×128  (1024px input)
  Flux.2  → 16ch × 128×128  (1024px input)

Each: load VAE → encode → free → cluster → extract → store
Then: comparative diagnostics
"""

import os, time, json, zipfile, math
import numpy as np
import torch
import torch.nn.functional as F
from pathlib import Path
from tqdm.auto import tqdm
from collections import Counter

# === 0. Images ================================================================
print("=" * 70)
print("Multi-VAE Geometric Comparison Pipeline")
print("=" * 70)

LIMINAL_DIR = '/content/liminal'
HF_REPO = "AbstractPhil/grid-geometric-classifier-sliding-proto"

IMAGE_EXTENSIONS = {'.jpg', '.jpeg', '.png', '.webp', '.bmp'}

def find_images(directory):
    return sorted([
        os.path.join(r, f) for r, _, fs in os.walk(directory)
        for f in fs if Path(f).suffix.lower() in IMAGE_EXTENSIONS
    ]) if os.path.exists(directory) else []

image_paths = find_images(LIMINAL_DIR)

if len(image_paths) == 0:
    try:
        from huggingface_hub import hf_hub_download
    except ImportError:
        os.system('pip install -q huggingface_hub')
        from huggingface_hub import hf_hub_download
    print(f"Downloading liminal.zip from {HF_REPO}...")
    zip_path = hf_hub_download(repo_id=HF_REPO, filename="liminal.zip")
    with zipfile.ZipFile(zip_path, 'r') as z:
        z.extractall('/content/')
    image_paths = find_images(LIMINAL_DIR)
    if len(image_paths) == 0:
        # Try finding extracted dir with a different name
        for d in os.listdir('/content/'):
            full = f'/content/{d}'
            if os.path.isdir(full) and d not in ['.config', 'sample_data', 'drive', '__pycache__']:
                found = find_images(full)
                if len(found) > 0:
                    LIMINAL_DIR = full
                    image_paths = found
                    break

assert len(image_paths) > 0, f"No images found. Check {LIMINAL_DIR}"
print(f"Found {len(image_paths)} images")

# === 1. Classifier ============================================================
print("\n" + "=" * 70)
print("Step 1: Classifier")
print("=" * 70)

ckpt = '/content/best_vae_ca_classifier.pt'
if not os.path.exists(ckpt):
    ckpt = '/content/checkpoints_vae_ca/best.pt'

model = PatchCrossAttentionClassifier(n_classes=NUM_CLASSES)
model.load_state_dict(torch.load(ckpt, map_location='cpu', weights_only=True))
device = torch.device('cuda')
model = model.to(device).eval()
print(f"Loaded {sum(p.numel() for p in model.parameters()):,} params")

# === 2. VAE Definitions ======================================================

try:
    from diffusers import AutoencoderKL
except ImportError:
    os.system('pip install -q diffusers transformers accelerate')
    from diffusers import AutoencoderKL

from torchvision import transforms
from PIL import Image

VAE_CONFIGS = [
    {
        'name': 'SD 1.5',
        'model_id': 'stable-diffusion-v1-5/stable-diffusion-v1-5',
        'subfolder': 'vae',
        'input_res': 512,
        'dtype': torch.float16,
        'cache_dir': '/content/latent_cache_sd15',
    },
    {
        'name': 'SDXL',
        'model_id': 'madebyollin/sdxl-vae-fp16-fix',
        'subfolder': None,
        'input_res': 1024,
        'dtype': torch.float16,
        'cache_dir': '/content/latent_cache_sdxl',
    },
    {
        'name': 'Flux.1',
        'model_id': 'black-forest-labs/FLUX.1-dev',
        'subfolder': 'vae',
        'input_res': 1024,
        'dtype': torch.bfloat16,
        'cache_dir': '/content/latent_cache_flux1',
    },
    {
        'name': 'Flux.2',
        'model_id': 'black-forest-labs/FLUX.2-dev',
        'subfolder': 'vae',
        'input_res': 1024,
        'dtype': torch.bfloat16,
        'cache_dir': '/content/latent_cache_flux2',
    },
]


def get_scales_for_latent(C, H, W):
    """Compute appropriate scales based on actual latent dimensions. No L3 (noise)."""
    scales = []
    # L0: full latent (or capped)
    scales.append((min(C, 16), min(H, 64), min(W, 64)))
    # L1: regional
    scales.append((min(C, 8), min(H, 32), min(W, 32)))
    # L2: native patch (classifier resolution)
    scales.append((min(C, 8), 16, 16))
    return scales


def encode_dataset(vae, image_paths, cache_dir, input_res, dtype, batch_size=4):
    """Encode images, return list of cache paths."""
    os.makedirs(cache_dir, exist_ok=True)

    transform = transforms.Compose([
        transforms.Resize((input_res, input_res)),
        transforms.ToTensor(),
        transforms.Normalize([0.5]*3, [0.5]*3),
    ])

    latent_paths = []
    need_encode = []

    for p in image_paths:
        name = Path(p).stem
        cp = os.path.join(cache_dir, f'{name}.pt')
        latent_paths.append(cp)
        if not os.path.exists(cp):
            need_encode.append((p, cp))

    if not need_encode:
        return latent_paths

    for i in tqdm(range(0, len(need_encode), batch_size), desc="Encoding", unit="batch"):
        batch_items = need_encode[i:i+batch_size]
        imgs = []
        for p, cp in batch_items:
            try:
                imgs.append((transform(Image.open(p).convert('RGB')), cp))
            except Exception:
                pass

        if imgs:
            batch = torch.stack([im[0] for im in imgs]).to(device, dtype=dtype)
            with torch.no_grad():
                latents = vae.encode(batch).latent_dist.mean
            for j, (_, cp) in enumerate(imgs):
                torch.save(latents[j].cpu().float(), cp)
            del batch, latents

    return latent_paths


# === 3. Process Each VAE =====================================================

all_vae_results = {}

for vconf in VAE_CONFIGS:
    vname = vconf['name']
    print("\n" + "=" * 70)
    print(f"Processing: {vname}")
    print(f"  Model: {vconf['model_id']}")
    print("=" * 70)

    # --- Encode ---
    try:
        load_kwargs = dict(torch_dtype=vconf['dtype'])
        if vconf['subfolder']:
            load_kwargs['subfolder'] = vconf['subfolder']
        vae = AutoencoderKL.from_pretrained(
            vconf['model_id'], **load_kwargs
        ).to(device).eval()
    except Exception as e:
        print(f"  ⚠ Failed to load {vname}: {e}")
        print(f"  Skipping...")
        continue

    latent_paths = encode_dataset(
        vae, image_paths, vconf['cache_dir'],
        vconf['input_res'], vconf['dtype'])

    if not latent_paths:
        print(f"  ⚠ No latents produced for {vname}, skipping")
        del vae
        torch.cuda.empty_cache()
        continue

    # Sanity check: if first latent is NaN, purge cache and re-encode
    sample = torch.load(latent_paths[0])
    if torch.isnan(sample).any():
        print(f"  ⚠ NaN detected in cached latents — purging {vconf['cache_dir']}")
        import shutil
        shutil.rmtree(vconf['cache_dir'])
        latent_paths = encode_dataset(
            vae, image_paths, vconf['cache_dir'],
            vconf['input_res'], vconf['dtype'])
        sample = torch.load(latent_paths[0])

    C, H, W = sample.shape
    print(f"  Latent: ({C}, {H}, {W})  "
          f"mean={sample.mean():.3f} std={sample.std():.3f} "
          f"[{sample.min():.3f}, {sample.max():.3f}]")
    del sample

    # Free VAE immediately
    del vae
    torch.cuda.empty_cache()

    # --- Cluster ---
    N_CL = min(100, len(latent_paths))
    sample_batch = torch.stack([torch.load(latent_paths[i]) for i in range(N_CL)]).to(device)
    channel_groups, corr = cluster_channels_gpu(sample_batch, n_groups=min(8, C))
    print(f"  Groups: {channel_groups}")
    del sample_batch

    # --- Extract ---
    scales = get_scales_for_latent(C, H, W)
    print(f"  Scales: {scales}")

    config = ExtractionConfig(
        confidence_threshold=0.6,
        min_occupancy=0.01,
        image_batch_size=32,
    )
    config.scales = scales

    extractor = MultiScaleExtractor(model, config)

    IMG_BATCH = config.image_batch_size
    vae_annotations = []
    vae_records = []

    for batch_start in tqdm(range(0, len(latent_paths), IMG_BATCH),
                            desc=f"{vname} extract", unit=f"×{IMG_BATCH}"):
        bp = latent_paths[batch_start:batch_start + IMG_BATCH]
        names = [Path(p).stem for p in bp]
        latents = [torch.load(p).to(device) for p in bp]

        batch_results = extractor.extract_batch(latents, channel_groups)
        del latents

        for b_idx, result in enumerate(batch_results):
            raw = result['raw_annotations']
            dev = result['deviance_annotations']
            all_anns = raw + dev

            vae_records.append({
                'name': names[b_idx],
                'n_total': len(all_anns),
                'n_raw': len(raw),
                'n_deviance': len(dev),
                'classes': Counter(a.class_name for a in all_anns),
                'confidences': [a.confidence for a in all_anns],
                'scales': Counter(a.scale_level for a in all_anns),
                'dimensions': Counter(a.dimension for a in all_anns),
                'curved': sum(1 for a in all_anns if a.is_curved),
            })

            for a in all_anns:
                vae_annotations.append({
                    'class': a.class_name, 'confidence': a.confidence,
                    'scale': a.scale_level, 'dimension': a.dimension,
                    'curved': a.is_curved, 'curvature': a.curvature_type,
                    'source': a.source,
                })

    # Summarize
    total = len(vae_annotations)
    cls_counts = Counter(a['class'] for a in vae_annotations)
    confs = [a['confidence'] for a in vae_annotations]

    all_vae_results[vname] = {
        'latent_shape': (C, H, W),
        'n_images': len(vae_records),
        'total_annotations': total,
        'class_counts': cls_counts,
        'mean_confidence': float(np.mean(confs)) if confs else 0,
        'std_confidence': float(np.std(confs)) if confs else 0,
        'records': vae_records,
        'channel_groups': channel_groups,
        'scales': scales,
    }

    if confs:
        print(f"  {vname}: {total:,} annotations, conf={np.mean(confs):.3f}")
    else:
        print(f"  {vname}: 0 annotations (check latent stats above)")
    top5 = cls_counts.most_common(5)
    for cls, cnt in top5:
        print(f"    {cls:20s} {cnt:>10,} ({cnt/max(total,1)*100:5.1f}%)")

    del vae_annotations, vae_records
    torch.cuda.empty_cache()


# =============================================================================
# COMPARATIVE ANALYSIS
# =============================================================================
print("\n" + "=" * 70)
print("COMPARATIVE ANALYSIS: VAE Geometric Structures")
print("=" * 70)

vae_names = list(all_vae_results.keys())

# --- Table: Overview ---
print(f"\n{'─'*70}")
print(f"  {'VAE':12s} {'Latent':>14s} {'Ann':>12s} {'Ann/img':>8s} "
      f"{'Conf':>6s} {'Classes':>7s}")
print(f"{'─'*70}")
for vn in vae_names:
    r = all_vae_results[vn]
    sh = f"{r['latent_shape'][0]}×{r['latent_shape'][1]}×{r['latent_shape'][2]}"
    n_cls = len(r['class_counts'])
    ann_per = r['total_annotations'] / max(r['n_images'], 1)
    print(f"  {vn:12s} {sh:>14s} {r['total_annotations']:>12,} {ann_per:>8.0f} "
          f"{r['mean_confidence']:>6.3f} {n_cls:>4d}/38")

# --- Table: Top-5 classes per VAE ---
print(f"\n{'─'*70}")
print("TOP-5 CLASSES PER VAE")
print(f"{'─'*70}")
for vn in vae_names:
    r = all_vae_results[vn]
    total = r['total_annotations']
    top5 = r['class_counts'].most_common(5)
    classes_str = "  ".join(f"{c}:{cnt/max(total,1)*100:.0f}%" for c, cnt in top5)
    print(f"  {vn:12s}  {classes_str}")

# --- Class presence heatmap (which classes appear in which VAEs) ---
print(f"\n{'─'*70}")
print("CLASS PRESENCE ACROSS VAEs (>0.5% of annotations)")
print(f"{'─'*70}")

all_classes_seen = set()
for vn in vae_names:
    for cls in all_vae_results[vn]['class_counts']:
        all_classes_seen.add(cls)

# Sort by total frequency
class_totals = Counter()
for vn in vae_names:
    class_totals.update(all_vae_results[vn]['class_counts'])

print(f"  {'Class':20s}", end="")
for vn in vae_names:
    print(f" {vn:>10s}", end="")
print()

for cls, _ in class_totals.most_common():
    row_vals = []
    any_significant = False
    for vn in vae_names:
        r = all_vae_results[vn]
        total = max(r['total_annotations'], 1)
        cnt = r['class_counts'].get(cls, 0)
        pct = cnt / total * 100
        row_vals.append(pct)
        if pct >= 0.5:
            any_significant = True

    if any_significant:
        print(f"  {cls:20s}", end="")
        for pct in row_vals:
            if pct >= 5:
                print(f" {pct:>9.1f}%", end="")
            elif pct >= 0.5:
                print(f" {pct:>9.1f}%", end="")
            elif pct > 0:
                print(f"      trace", end="")
            else:
                print(f"         —", end="")
        print()

# --- Geometric fingerprint comparison ---
print(f"\n{'─'*70}")
print("GEOMETRIC FINGERPRINT SIMILARITY (cosine between class distributions)")
print(f"{'─'*70}")

if len(vae_names) >= 2:
    vecs = {}
    for vn in vae_names:
        r = all_vae_results[vn]
        total = max(r['total_annotations'], 1)
        vec = np.zeros(len(CLASS_NAMES))
        for cls, cnt in r['class_counts'].items():
            vec[CLASS_NAMES.index(cls)] = cnt / total
        vecs[vn] = vec

    print(f"  {'':12s}", end="")
    for vn in vae_names:
        print(f" {vn:>10s}", end="")
    print()

    for vn1 in vae_names:
        print(f"  {vn1:12s}", end="")
        for vn2 in vae_names:
            v1, v2 = vecs[vn1], vecs[vn2]
            n1, n2 = np.linalg.norm(v1), np.linalg.norm(v2)
            if n1 > 0 and n2 > 0:
                sim = np.dot(v1, v2) / (n1 * n2)
            else:
                sim = 0
            print(f" {sim:>10.3f}", end="")
        print()

# --- Dimensional comparison ---
print(f"\n{'─'*70}")
print("DIMENSIONAL DISTRIBUTION")
print(f"{'─'*70}")
print(f"  {'VAE':12s} {'0D':>8s} {'1D':>8s} {'2D':>8s} {'3D':>8s} {'Curved':>8s}")
for vn in vae_names:
    r = all_vae_results[vn]
    total = max(r['total_annotations'], 1)
    dim_c = Counter()
    curved_n = 0
    for rec in r['records']:
        dim_c.update(rec['dimensions'])
        curved_n += rec['curved']
    print(f"  {vn:12s}", end="")
    for d in range(4):
        pct = dim_c.get(d, 0) / total * 100
        print(f" {pct:>7.1f}%", end="")
    print(f" {curved_n/total*100:>7.1f}%")

# --- Channel group comparison ---
print(f"\n{'─'*70}")
print("CHANNEL GROUPS")
print(f"{'─'*70}")
for vn in vae_names:
    r = all_vae_results[vn]
    sh = r['latent_shape']
    print(f"  {vn:12s} ({sh[0]}ch): {r['channel_groups']}")

# --- Per-image cross-VAE consistency ---
if len(vae_names) >= 2:
    print(f"\n{'─'*70}")
    print("PER-IMAGE CROSS-VAE CONSISTENCY")
    print(f"{'─'*70}")
    print("  Do images that are geometrically distinct in one VAE stay distinct in another?")

    # Build per-image class vectors for each VAE
    per_vae_vectors = {}
    common_names = None

    for vn in vae_names:
        r = all_vae_results[vn]
        name_to_vec = {}
        for rec in r['records']:
            vec = np.zeros(len(CLASS_NAMES))
            total = max(rec['n_total'], 1)
            for cls, cnt in rec['classes'].items():
                vec[CLASS_NAMES.index(cls)] = cnt / total
            name_to_vec[rec['name']] = vec

        per_vae_vectors[vn] = name_to_vec
        names_set = set(name_to_vec.keys())
        common_names = names_set if common_names is None else common_names & names_set

    common_names = sorted(common_names)[:200]  # sample for speed

    if len(common_names) >= 10:
        for vn1_idx, vn1 in enumerate(vae_names):
            for vn2 in vae_names[vn1_idx+1:]:
                v1_mat = np.stack([per_vae_vectors[vn1][n] for n in common_names])
                v2_mat = np.stack([per_vae_vectors[vn2][n] for n in common_names])

                # Per-image cosine between VAEs
                norms1 = np.linalg.norm(v1_mat, axis=1, keepdims=True)
                norms2 = np.linalg.norm(v2_mat, axis=1, keepdims=True)
                norms1 = np.clip(norms1, 1e-8, None)
                norms2 = np.clip(norms2, 1e-8, None)
                cos = np.sum((v1_mat / norms1) * (v2_mat / norms2), axis=1)

                print(f"  {vn1:12s} ↔ {vn2:12s}: "
                      f"mean={cos.mean():.3f} std={cos.std():.3f} "
                      f"[{cos.min():.3f}, {cos.max():.3f}]")
                if cos.mean() > 0.9:
                    print(f"    → Same geometric structure")
                elif cos.mean() > 0.7:
                    print(f"    → Similar structure")
                elif cos.mean() > 0.4:
                    print(f"    → Different structures")
                else:
                    print(f"    → Very different geometric encoding")

# === Save =====================================================================
save_data = {}
for vn in vae_names:
    r = all_vae_results[vn]
    save_data[vn] = {
        'latent_shape': r['latent_shape'],
        'n_images': r['n_images'],
        'total_annotations': r['total_annotations'],
        'class_counts': dict(r['class_counts']),
        'mean_confidence': r['mean_confidence'],
        'scales': [list(s) for s in r['scales']],
        'channel_groups': r['channel_groups'],
    }

with open('/content/multi_vae_comparison.json', 'w') as f:
    json.dump(save_data, f, indent=2)

print(f"\nSaved to /content/multi_vae_comparison.json")
print("=" * 70)
print("✓ Multi-VAE comparison complete!")
print("=" * 70)