| { | |
| "packaging_assembly": [ | |
| "terminase small subunit", | |
| "terminase large subunit", | |
| "terminase", | |
| "tail length tape measure protein chaperone", | |
| "tail fiber chaperone", | |
| "tail fiber assembly protein", | |
| "tail fiber assembly", | |
| "tail chaperone protein", | |
| "tail assembly protein", | |
| "Tail assembly chaperone", | |
| "tail assembly chaperone", | |
| "scaffolding protein", | |
| "PmgS-like head morphogenesis", | |
| "PmgG-like head morphogenesis", | |
| "PmgC-like head morphogenesis", | |
| "PmgB-like head morphogenesis", | |
| "NifU-like Fe-S cluster assembly protein", | |
| "morphogenesis (protein I of M13)", | |
| "L-shaped tail fiber protein assembly", | |
| "head vertex assembly chaperone", | |
| "head scaffolding protein", | |
| "head morphogenesis", | |
| "head assembly", | |
| "DNA packaging chaperone FI", | |
| "capsid assembly protein", | |
| "baseplate hub assembly catalyst", | |
| "baseplate assembly protein", | |
| "assembly (protein IV of M13)", | |
| "head maturation protease", | |
| "prohead protease inhibitor", | |
| "tail chaperonin" | |
| ], | |
| "pvp": [ | |
| "tail spike protein", | |
| "collagen like minor tail", | |
| "tail fiber protein; Ig-domain containing", | |
| "tail protein with peptidase activity", | |
| "straight fibre tail protein", | |
| "tail tube", | |
| "baseplate tail tube cap", | |
| "tail collar protein", | |
| "lytic tail fiber protein", | |
| "fibritin neck whisker", | |
| "RNA ligase and tail fiber protein attachment catalyst", | |
| "receptor binding tail protein", | |
| "baseplate wedge tail fiber protein connector", | |
| "spore coat protein", | |
| "lytic tail protein", | |
| "tail protease", | |
| "head-tail adaptor Ad3", | |
| "prohead", | |
| "head closure Hc2", | |
| "tail tubular protein", | |
| "upper collar connector", | |
| "tail spike protein with colonic acid degradation activity", | |
| "baseplate hub and tail lysozyme", | |
| "Gpu-like tail protein", | |
| "tail sheath", | |
| "head closure Hc3", | |
| "tail completion", | |
| "collar tail protein for L-shaped tail fibre attachment", | |
| "tail protein XkdN-like", | |
| "minor head protein Ace-like", | |
| "pentameric base spike protein", | |
| "neck passage structure protein", | |
| "major spike protein", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "tail fiber protein", | |
| "tail appendage", | |
| "long tail fiber protein distal subunit", | |
| "lower collar", | |
| "tail injection transglycosylase", | |
| "head protein", | |
| "head decoration protein", | |
| "head-tail adaptor", | |
| "tail protein and host specificity", | |
| "pyramid forming protein", | |
| "tail tip protein Tal", | |
| "head closure", | |
| "baseplate hub subunit and tail lysozyme", | |
| "virion RNA polymerase", | |
| "Hoc-like head decoration", | |
| "baseplate spike", | |
| "major tail protein", | |
| "minor head protein inhibitor of protease", | |
| "EPS depolymerasehost range and adsorption protein", | |
| "baseplate wedge subunit", | |
| "tail sheath and receptor binding protein", | |
| "major coat protein", | |
| "major head protein", | |
| "tail terminator", | |
| "head fiber protein", | |
| "minor coat protein", | |
| "tail fiber adhesin", | |
| "short tail fiber protein", | |
| "virion structural protein", | |
| "head-tail connector protein", | |
| "major capsid protein", | |
| "pre-neck appendage protein", | |
| "minor head protein; receptor binding", | |
| "major head and protease protein", | |
| "baseplate hub subunit and tail length", | |
| "minor head protein", | |
| "baseplate hub distal subunit", | |
| "head-tail adaptor Ad1", | |
| "head closure Hc1", | |
| "distal tail protein Dit", | |
| "base plate tail tube protein", | |
| "tail tube protein", | |
| "tail associated cell-wall hydrolase", | |
| "tail fiber protein; host specificity", | |
| "head-tail adaptor Ad2", | |
| "tail protein", | |
| "long tail fiber protein proximal connector", | |
| "tail sheath stabilizer", | |
| "portal protein", | |
| "baseplate protein", | |
| "neck passage structure", | |
| "minor tail protein with lysin activity", | |
| "tail fiber protein and host specificity", | |
| "tail collar fiber protein", | |
| "tail fiber protein/ lysozyme", | |
| "head decoration", | |
| "tail associated lysin", | |
| "distal tail protein", | |
| "tail protein with lysin activity", | |
| "adaptor Ad4", | |
| "attachment protein", | |
| "structural protein with Ig domain", | |
| "baseplate wedge initiator", | |
| "tail length tape measure protein", | |
| "tail needle knob", | |
| "baseplate hub", | |
| "minor tail protein", | |
| "neck protein", | |
| "tail protein with endopeptidase domain", | |
| "central tail fiber J", | |
| "appendage", | |
| "major tail protein with Ig-like domain", | |
| "head-tail joining", | |
| "minor head protein and DNA pilot", | |
| "structural protein", | |
| "tail fiber protein proximal subunit", | |
| "tail completion or Neck1 protein", | |
| "tail protein with endopeptidase activity", | |
| "tail needle protein" | |
| ], | |
| "exclude_neg_internal": [ | |
| "pilot protein for DNA ejection", | |
| "internal virion protein with endolysin domain", | |
| "internal virion protein", | |
| "internal virion lysozyme motif", | |
| "internal head protein", | |
| "DNA ejection protein", | |
| "DNA ejection" | |
| ], | |
| "tail": [ | |
| "tail terminator", | |
| "tail spike protein", | |
| "collagen like minor tail", | |
| "tail fiber protein; Ig-domain containing", | |
| "tail protein with peptidase activity", | |
| "short tail fiber protein", | |
| "straight fibre tail protein", | |
| "tail tube", | |
| "tail fiber adhesin", | |
| "baseplate tail tube cap", | |
| "baseplate wedge tail fiber protein connector", | |
| "lytic tail fiber protein", | |
| "RNA ligase and tail fiber protein attachment catalyst", | |
| "receptor binding tail protein", | |
| "lytic tail protein", | |
| "tail protease", | |
| "baseplate hub subunit and tail length", | |
| "tail tubular protein", | |
| "baseplate hub distal subunit", | |
| "base plate tail tube protein", | |
| "distal tail protein Dit", | |
| "tail associated cell-wall hydrolase", | |
| "tail tube protein", | |
| "EPS depolymerase", | |
| "tail fiber protein; host specificity", | |
| "tail protein", | |
| "long tail fiber protein proximal connector", | |
| "tail sheath stabilizer", | |
| "tail spike protein with colonic acid degradation activity", | |
| "baseplate hub and tail lysozyme", | |
| "baseplate protein", | |
| "Gpu-like tail protein", | |
| "tail sheath", | |
| "minor tail protein with lysin activity", | |
| "tail fiber protein and host specificity", | |
| "tail collar fiber protein", | |
| "tail fiber protein/ lysozyme", | |
| "tail completion", | |
| "tail protein XkdN-like", | |
| "pentameric base spike protein", | |
| "tail associated lysin", | |
| "distal tail protein", | |
| "major spike protein", | |
| "tail protein with lysin activity", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "tail fiber protein", | |
| "tail appendage", | |
| "long tail fiber protein distal subunit", | |
| "tail injection transglycosylase", | |
| "baseplate wedge initiator", | |
| "tail length tape measure protein", | |
| "tail protein and host specificity", | |
| "tail needle knob", | |
| "baseplate hub", | |
| "minor tail protein", | |
| "tail tip protein Tal", | |
| "baseplate hub subunit and tail lysozyme", | |
| "tail protein with endopeptidase domain", | |
| "central tail fiber J", | |
| "major tail protein with Ig-like domain", | |
| "baseplate spike", | |
| "major tail protein", | |
| "tail fiber protein proximal subunit", | |
| "adhesin", | |
| "tail completion or Neck1 protein", | |
| "baseplate wedge subunit", | |
| "tail protein with endopeptidase activity", | |
| "tail sheath and receptor binding protein", | |
| "tail needle protein" | |
| ], | |
| "capsid": [ | |
| "major head and protease protein", | |
| "minor head protein; receptor binding", | |
| "head decoration", | |
| "minor head protein", | |
| "minor head protein Ace-like", | |
| "prohead", | |
| "head fiber protein", | |
| "Hoc-like head decoration", | |
| "minor coat protein", | |
| "minor head protein and DNA pilot", | |
| "minor head protein inhibitor of protease", | |
| "head decoration protein", | |
| "head protein", | |
| "spore coat protein", | |
| "major capsid protein", | |
| "major coat protein", | |
| "major head protein" | |
| ], | |
| "portal": [ | |
| "portal protein" | |
| ], | |
| "collar": [ | |
| "tail collar protein", | |
| "collar tail protein for L-shaped tail fibre attachment", | |
| "lower collar", | |
| "upper collar connector" | |
| ], | |
| "head-tail_joining": [ | |
| "head-tail joining", | |
| "head-tail connector protein", | |
| "head-tail adaptor Ad3", | |
| "head-tail adaptor Ad2", | |
| "head-tail adaptor Ad1", | |
| "head-tail adaptor", | |
| "adaptor Ad4", | |
| "head closure Hc3", | |
| "head closure Hc2", | |
| "head closure", | |
| "head closure Hc1" | |
| ], | |
| "exclude_neg_pvp_subtypes": [ | |
| "virion structural protein", | |
| "structural protein", | |
| "structural protein with Ig domain", | |
| "internal virion protein", | |
| "internal virion protein with endolysin domain", | |
| "internal virion lysozyme motif" | |
| ], | |
| "tail_sheath": [ | |
| "tail sheath stabilizer", | |
| "tail sheath and receptor binding protein", | |
| "tail sheath" | |
| ], | |
| "baseplate": [ | |
| "distal tail protein", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "baseplate tail tube cap", | |
| "baseplate wedge tail fiber protein connector", | |
| "long tail fiber protein distal subunit", | |
| "baseplate wedge initiator", | |
| "baseplate hub", | |
| "tail tip protein Tal", | |
| "baseplate hub subunit and tail length", | |
| "baseplate hub distal subunit", | |
| "base plate tail tube protein", | |
| "baseplate hub subunit and tail lysozyme", | |
| "distal tail protein Dit", | |
| "baseplate wedge subunit", | |
| "baseplate hub and tail lysozyme", | |
| "baseplate protein" | |
| ], | |
| "tail_appendage": [ | |
| "tail fiber protein/ lysozyme", | |
| "tail spike protein", | |
| "pentameric base spike protein", | |
| "major spike protein", | |
| "tail fiber protein; Ig-domain containing", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "tail fiber adhesin", | |
| "short tail fiber protein", | |
| "straight fibre tail protein", | |
| "tail fiber protein", | |
| "tail appendage", | |
| "long tail fiber protein distal subunit", | |
| "lytic tail fiber protein", | |
| "tail needle knob", | |
| "central tail fiber J", | |
| "baseplate spike", | |
| "tail fiber protein; host specificity", | |
| "long tail fiber protein proximal connector", | |
| "tail fiber protein proximal subunit", | |
| "tail spike protein with colonic acid degradation activity", | |
| "tail needle protein", | |
| "tail fiber protein and host specificity", | |
| "tail collar fiber protein" | |
| ], | |
| "major_tail": [ | |
| "major tail protein with Ig-like domain", | |
| "tail tubular protein", | |
| "tail tube protein", | |
| "major tail protein", | |
| "tail tube", | |
| "base plate tail tube protein" | |
| ], | |
| "minor_tail": [ | |
| "minor tail protein with lysin activity", | |
| "minor tail protein", | |
| "collagen like minor tail", | |
| "tail terminator", | |
| "Gpu-like tail protein", | |
| "tail completion or Neck1 protein", | |
| "tail completion" | |
| ], | |
| "exclude_neg_tail": [ | |
| "tail protein" | |
| ], | |
| "exclude_neg_tail_appendage": [ | |
| "EPS depolymerase", | |
| "adhesin", | |
| "lytic tail protein", | |
| "receptor binding tail protein", | |
| "tail associated cell-wall hydrolase", | |
| "tail associated lysin", | |
| "tail injection transglycosylase", | |
| "tail protease", | |
| "tail protein", | |
| "tail protein and host specificity", | |
| "tail protein with endopeptidase activity", | |
| "tail protein with endopeptidase domain", | |
| "tail protein with lysin activity", | |
| "tail protein with peptidase activity" | |
| ], | |
| "major_capsid": [ | |
| "major head protein", | |
| "major head and protease protein", | |
| "major capsid protein", | |
| "major coat protein" | |
| ], | |
| "minor_capsid": [ | |
| "minor head protein Ace-like", | |
| "minor head protein; receptor binding", | |
| "minor head protein inhibitor of protease", | |
| "minor head protein", | |
| "minor head protein and DNA pilot", | |
| "minor coat protein", | |
| "Hoc-like head decoration", | |
| "head decoration protein", | |
| "head decoration" | |
| ], | |
| "exclude_neg_capsid": [ | |
| "head protein" | |
| ], | |
| "adsorption-related": [ | |
| "tail spike protein", | |
| "tail fiber protein; Ig-domain containing", | |
| "tail fiber adhesin", | |
| "short tail fiber protein", | |
| "lytic tail fiber protein", | |
| "receptor binding tail protein", | |
| "minor head protein; receptor binding", | |
| "tail fiber protein; host specificity", | |
| "long tail fiber protein proximal connector", | |
| "tail fiber protein and host specificity", | |
| "tail collar fiber protein", | |
| "tail fiber protein/ lysozyme", | |
| "pentameric base spike protein", | |
| "major spike protein", | |
| "tail fiber assembly", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "tail fiber protein", | |
| "long tail fiber protein distal subunit", | |
| "tail protein and host specificity", | |
| "tail needle knob", | |
| "central tail fiber J", | |
| "baseplate spike", | |
| "tail fiber protein proximal subunit", | |
| "adhesin", | |
| "tail sheath and receptor binding protein", | |
| "tail needle protein" | |
| ], | |
| "cell_wall_depolymerase": [ | |
| "endolysin; lysM motif", | |
| "levanase", | |
| "tail protein with peptidase activity", | |
| "hemolysin", | |
| "lytic tail fiber protein", | |
| "dCMP deaminase", | |
| "lytic tail protein", | |
| "tail protease", | |
| "ATP-dependent protease", | |
| "cysteine protease", | |
| "transglycosylase", | |
| "EPS depolymerase", | |
| "lipase", | |
| "esterase/lipase", | |
| "glycoside hydrolase", | |
| "tail spike protein with colonic acid degradation activity", | |
| "baseplate hub and tail lysozyme", | |
| "pectate lyase", | |
| "metallo-phosphoesterase", | |
| "metallo-protease", | |
| "endolysin", | |
| "pectin lyase activity", | |
| "tail injection transglycosylase", | |
| "esterase", | |
| "pseudomurein endosiopeptidase", | |
| "baseplate hub subunit and tail lysozyme", | |
| "carboxypeptidase", | |
| "deoxycytidinylate deaminase", | |
| "glycerophosphoryl diester phosphodiesterase", | |
| "dCTP deaminase", | |
| "lysophospholipase L1-like esterase", | |
| "poly-gamma-glutamate hydrolase", | |
| "DHH phosphoesterase", | |
| "lysM motif protein", | |
| "metallo-endopeptidase", | |
| "internal virion lysozyme motif", | |
| "O-antigen acetylase", | |
| "peptidase", | |
| "cAMP phosphodiesterase", | |
| "zinc carboxypeptidase", | |
| "phosphodiesterase", | |
| "major head and protease protein", | |
| "tail associated cell-wall hydrolase", | |
| "protease", | |
| "phospho-2-dehydro-3-deoxyheptonate aldolase", | |
| "chitinase", | |
| "minor tail protein with lysin activity", | |
| "internal virion protein with endolysin domain", | |
| "peptidase HslV family", | |
| "amidase", | |
| "tail fiber protein/ lysozyme", | |
| "polysaccharide deacetylase", | |
| "tail associated lysin", | |
| "tail protein with lysin activity", | |
| "L-alanyl-D-glutamate peptidase", | |
| "zinc-finger protease", | |
| "lysozyme domain-containing protein", | |
| "haemolysin-type calcium binding", | |
| "tail protein with endopeptidase domain", | |
| "spore protease", | |
| "transaldolase", | |
| "phosphoesterase", | |
| "tail protein with endopeptidase activity", | |
| "hyaluronidase", | |
| "endolysin; inhibits RNA polymerase" | |
| ], | |
| "lysis": [ | |
| "haemolysin-type calcium binding", | |
| "amidase", | |
| "lysis determining protein", | |
| "endolysin; lysM motif", | |
| "cysteine protease", | |
| "endolysin", | |
| "hemolysin", | |
| "endolysin; inhibits RNA polymerase", | |
| "lysozyme domain-containing protein", | |
| "lysM motif protein", | |
| "RIIB lysis inhibitor", | |
| "lysis inhibition; accessory protein", | |
| "RIIA lysis inhibitor", | |
| "lysis inhibition", | |
| "endolysin; inhibits RNA polymerase", | |
| "holin/anti-holin", | |
| "holin", | |
| "spanin", | |
| "Rz-like spanin", | |
| "i-spanin" | |
| ], | |
| "endolysin": [ | |
| "haemolysin-type calcium binding", | |
| "amidase", | |
| "lysis determining protein", | |
| "endolysin; lysM motif", | |
| "cysteine protease", | |
| "endolysin", | |
| "hemolysin", | |
| "endolysin; inhibits RNA polymerase", | |
| "lysozyme domain-containing protein", | |
| "lysM motif protein" | |
| ], | |
| "holin": [ | |
| "holin/anti-holin", | |
| "holin" | |
| ], | |
| "spanin": [ | |
| "spanin", | |
| "Rz-like spanin", | |
| "i-spanin" | |
| ], | |
| "lysis_inhibitor": [ | |
| "RIIB lysis inhibitor", | |
| "lysis inhibition; accessory protein", | |
| "RIIA lysis inhibitor", | |
| "lysis inhibition", | |
| "endolysin; inhibits RNA polymerase" | |
| ], | |
| "DNA-associated": [ | |
| "Rha-like transcriptional regulator", | |
| "DNA endonuclease", | |
| "DNA repair protein", | |
| "DNA transfer protein", | |
| "DNA transposition protein", | |
| "recombinase", | |
| "CI-like repressor", | |
| "RusA-like Holliday junction resolvase", | |
| "Ndd-like nucleoid disruption protein", | |
| "CII-like regulator", | |
| "intron-like DNA endonuclease", | |
| "DNA ligase", | |
| "RecA or Sak4, length ?", | |
| "restriction enzyme III", | |
| "DNA ejection", | |
| "terminase small subunit", | |
| "GP16.7-like replication protein", | |
| "excisionase", | |
| "helicase", | |
| "segregation and condensation complex subunit ScpB", | |
| "replication origin binding", | |
| "restriction endonuclease II", | |
| "terminase large subunit", | |
| "Sir2 (NAD-dependent deacetylase)", | |
| "replication initiation O-like", | |
| "DNA circularization", | |
| "DnaB-like replicative helicase", | |
| "anti-termination protein N-like", | |
| "restriction endonuclease", | |
| "replication initiation protein", | |
| "ParB C-terminal domain", | |
| "DNA terminal protein", | |
| "polarity suppression Psu-like by overcoming Rho", | |
| "replication terminator", | |
| "Dda-like helicase", | |
| "nicking at origin of replication", | |
| "partition protein", | |
| "Cas4-domain exonuclease", | |
| "Sak4-like ssDNA annealing protein", | |
| "Erf recombination cofactor Arf", | |
| "RecT-like ssDNA annealing protein", | |
| "replisome organizer DnaA-like", | |
| "NAD-dependent DNA ligase", | |
| "endonuclease VII", | |
| "DnaC-like helicase loader", | |
| "exonuclease VIII", | |
| "late sigma transcription factor", | |
| "tubulin PhuZ", | |
| "endonuclease V N-glycosylase UV repair enzyme", | |
| "sigma factor for late transcription", | |
| "exonuclease VII", | |
| "DNA polymerase exonuclease subunit", | |
| "HNH endonuclease", | |
| "sigma factor", | |
| "DNA topoisomerase", | |
| "polymerase", | |
| "RecX-like filament modulator", | |
| "ParA-like partition protein", | |
| "Alt-like transcription activator", | |
| "Holliday junction resolvase", | |
| "tRNA methyltransferase", | |
| "DNA repair exonuclease", | |
| "DnaA-like replication initiation protein", | |
| "rolling circle DNA replication initiation", | |
| "Arc-like DNA binding domain", | |
| "ParB-like partition nuclease", | |
| "Erf-like ssDNA annealing protein", | |
| "restriction enzyme I", | |
| "DNA ejection protein", | |
| "SbcC-like subunit of palindrome specific endonuclease", | |
| "transposase", | |
| "DNA repair photolyase", | |
| "RecA filament binding protein DinI", | |
| "ATP-dependent DNA ligase", | |
| "ParB-like partition protein", | |
| "UvsX-like recombinase", | |
| "clamp loader of DNA polymerase", | |
| "MotA-like activator of middle period transcription", | |
| "Ren-like exclusion protein", | |
| "ribonuclease toxin of AT system", | |
| "integrase", | |
| "plasmid antitoxin with HTH domain", | |
| "helicase loader", | |
| "sigma-K factor", | |
| "nucleoid associated protein", | |
| "DNA invertase", | |
| "Arc-like transcriptional regulator", | |
| "DNA primase/helicase", | |
| "anti-termination protein Q-like", | |
| "minor head protein and DNA pilot", | |
| "RecJ-like ssDNA exonuclease", | |
| "site-specific recombination directionality factor RDF", | |
| "replication", | |
| "SbcD-like subunit of palindrome specific endonuclease", | |
| "endonuclease nicking abasic sites generated by host uracil glycosylase Ung", | |
| "DnaD-like helicase loader", | |
| "single strand annealing protein", | |
| "exonuclease recombination-associated", | |
| "DNA replication initiation", | |
| "genome terminal protein", | |
| "DNA methyltransferase", | |
| "P-like helicase loader", | |
| "cro-like repressor", | |
| "DNA topoisomerase II", | |
| "transcriptional regulator WhiB-like", | |
| "membrane DNA delivery", | |
| "DarB-like antirestriction", | |
| "DNA topoisomerase II large subunit", | |
| "DNA polymerase I", | |
| "NinB/ Orf homologous recombination mediator", | |
| "3'-5' exonuclease", | |
| "MarR family transcrition regulator", | |
| "Mu Gam-like end protection", | |
| "uracil-DNA glycosylase", | |
| "Ref-like RecA filament endonuclease", | |
| "replication helicase", | |
| "CII-like transcriptional activator", | |
| "ERCC4-type nuclease", | |
| "CRISPR/Cas system associated", | |
| "DNA methylase", | |
| "regulator of chromosome condensation", | |
| "replication initiation by nicking", | |
| "excisionase and transcriptional regulator", | |
| "nuclease", | |
| "recombination directionality factor", | |
| "replicative helicase-primase", | |
| "terminase", | |
| "RecE-like recombination exonuclease", | |
| "DdrA-like anti-restriction protein", | |
| "methyltransferase", | |
| "RuvC-like Holliday junction resolvase", | |
| "alkylated DNA repair", | |
| "Arc-like repressor", | |
| "Bet-like ssDNA annealing protein", | |
| "UmuD-like protein", | |
| "nucloid associated Lsr2-like", | |
| "Holliday junction branch migration helicase", | |
| "Gp2.5-like ssDNA binding protein and ssDNA annealing protein", | |
| "exonuclease V", | |
| "DNA primase", | |
| "helicase subunit of the DNA excision repair complex", | |
| "DNA polymerase processivity factor", | |
| "DNA binding protein", | |
| "Mom-like DNA modification protein", | |
| "DprA-like DNA recombination-mediator protein", | |
| "endonuclease", | |
| "DNA helicase loader", | |
| "intron encoded nuclease", | |
| "DNA endonuclease V", | |
| "transcriptional regulator, D5-like", | |
| "anti-restriction nuclease", | |
| "HTH DNA binding domain protein", | |
| "exonuclease", | |
| "Sak-like ssDNA annealing protein", | |
| "CopG-like transcriptional repressor", | |
| "DNA helicase", | |
| "DNA packaging chaperone FI", | |
| "histone family DNA-binding", | |
| "Cox-like excisionase and repressor", | |
| "primase", | |
| "endoribonuclease", | |
| "DenB-like DNA endonuclease IV", | |
| "homing endonuclease with GIY-YIG motif", | |
| "HTH DNA binding protein", | |
| "pilot protein for DNA ejection", | |
| "RNA polymerase sigma factor", | |
| "NinG/ Rap DNA junction specific endonuclease", | |
| "DNA polymerase", | |
| "primosomal protein", | |
| "DNA polymerase III theta subunit", | |
| "DNA end protector", | |
| "WhiB transcriptional factor", | |
| "MotB-like transcriptional regulator", | |
| "homing endonuclease", | |
| "single strand DNA binding protein", | |
| "Lsr2-like DNA bridging protein", | |
| "Nun-like transcription termination factor", | |
| "DNA binding domain", | |
| "UvsY-like recombination mediator", | |
| "homing endonuclease with LAGLIDADG motif", | |
| "DNA condensation", | |
| "dsDNA binding protein", | |
| "Ku-like DNA end binding", | |
| "DNA polymerase/primase", | |
| "replication protein", | |
| "late promoter transcriptional regulator", | |
| "MerR-like transcriptional regulator", | |
| "SAM-dependent methyltransferase", | |
| "replisome organizer", | |
| "ribonuclease" | |
| ], | |
| "exclude_neg_DNA_binding": [ | |
| "anti-restriction protein", | |
| "Hdf-like antirestriction", | |
| "inhibitor of MrcBC restriction", | |
| "Ulx-like anti-restriction", | |
| "BstA abortive infection system, replication inhibitor", | |
| "transcriptional repressor", | |
| "FmdB-like transcriptional regulator", | |
| "Mrh transcription modulator under heat shock", | |
| "anti-repressor", | |
| "inhibitor of host transcription", | |
| "inhibitor of transcription initiation and antiterminator", | |
| "late transcriptional activator", | |
| "starvation-inducible transcriptional regulator", | |
| "transcription antiterminator", | |
| "transcription factor", | |
| "transcriptional activator", | |
| "transcriptional regulator", | |
| "DNA sliding clamp inhibitor; arrest of S.aureus DNA synthesis", | |
| "inhibitor of MrcBC restriction", | |
| "host RecBCD nuclease inhibitor", | |
| "host nuclease inhibitor", | |
| "gam-like host nuclease inhibitor" | |
| ], | |
| "RNA-associated": [ | |
| "RNA polymerase ADP-ribosylase", | |
| "tRNA amidotransferase", | |
| "tRNA synthetase", | |
| "tRNA splicing ligase", | |
| "translation initiation factor", | |
| "RNA ligase and tail fiber protein attachment catalyst", | |
| "Reverse transcriptase", | |
| "Dmd discriminator of mRNA degradation", | |
| "RNA-binding protein", | |
| "translational regulator", | |
| "tRNA methyltransferase", | |
| "translation repressor", | |
| "tRNA nucleotidyltransferase", | |
| "RNA ligase", | |
| "RNA polymerase", | |
| "translation elongation factor", | |
| "RNA replicase beta subunit", | |
| "RNA polymerase sigma factor", | |
| "RNA polymerase binding", | |
| "queuine tRNA-ribosyltransferase", | |
| "Alt-like RNA polymerase ADP-ribosyltransferase", | |
| "RNA polymerase beta subunit", | |
| "RNA polymerase inhibitor", | |
| "valyl tRNA synthetase modifier", | |
| "RpbA RNA polymerase binding protein", | |
| "tyrosyl-tRNA synthetase", | |
| "cef modifier of supressor tRNAs", | |
| "tRNA-His guanylyltransferase", | |
| "virion RNA polymerase", | |
| "Rnase H", | |
| "RNA-dependent RNA polymerase", | |
| "RNA 2'-phosphotransferase", | |
| "Rnase E", | |
| "goF mRNA metabolism modulator", | |
| "histidyl tRNA synthetase", | |
| "N4-like RNA polymerase", | |
| "endolysin; inhibits RNA polymerase", | |
| "tRNA splicing ligase RtcB" | |
| ], | |
| "nucleotide_metabolism": [ | |
| "dCMP deaminase", | |
| "anaerobic ribonucleotide reductase small subunit", | |
| "ribonucleotide reductase large subunit", | |
| "aerobic NDP reductase small subunit", | |
| "ribonucleotide reductase", | |
| "dCMP hydroxymethylase", | |
| "ribonucleoside reductase class II", | |
| "dATP triphosphohydrolase", | |
| "dihydrofolate reductase", | |
| "ribonucleotide reductase alpha subunit", | |
| "ribonucleoside-diphosphate reductase beta subunit", | |
| "nucleoside triphosphate pyrophosphohydrolase", | |
| "ribonucleotide reductase class Ia beta subunit", | |
| "dUTPase", | |
| "dATP / dGTP pyrophosphohydrolase", | |
| "nucleotidase", | |
| "anaerobic ribonucleoside reductase small subunit", | |
| "nucleoside 2-deoxyribosyltransferase", | |
| "thymidylate synthase", | |
| "thymidylate synthase complementing protein", | |
| "anaerobic ribonucleoside reductase large subunit", | |
| "nucleotidyltransferase", | |
| "DNA sliding clamp inhibitor; arrest of S.aureus DNA synthesis", | |
| "ribonucleotide reductase NrdA-like", | |
| "ribonucleoside diphosphate reductase small subunit", | |
| "deoxycytidinylate deaminase", | |
| "nucleoside deoxyribosyltransferase", | |
| "2-aminooxy adenylosuccinate synthetase", | |
| "dCTP deaminase", | |
| "ribonucleoside-diphosphate reductase large subunit", | |
| "nucleotide-sugar epimerase" | |
| ], | |
| "integration": [ | |
| "exonuclease recombination-associated", | |
| "DprA-like DNA recombination-mediator protein", | |
| "DNA topoisomerase", | |
| "recombinase", | |
| "DNA topoisomerase II", | |
| "Holliday junction resolvase", | |
| "RusA-like Holliday junction resolvase", | |
| "DNA topoisomerase II large subunit", | |
| "NinB/ Orf homologous recombination mediator", | |
| "Cox-like excisionase and repressor", | |
| "Ref-like RecA filament endonuclease", | |
| "DNA ligase", | |
| "RecA or Sak4, length ?", | |
| "transposase", | |
| "excisionase", | |
| "RecA filament binding protein DinI", | |
| "ATP-dependent DNA ligase", | |
| "UvsX-like recombinase", | |
| "excisionase and transcriptional regulator", | |
| "recombination directionality factor", | |
| "integrase", | |
| "RecE-like recombination exonuclease", | |
| "UvsY-like recombination mediator", | |
| "RuvC-like Holliday junction resolvase", | |
| "DNA invertase", | |
| "Erf recombination cofactor Arf", | |
| "site-specific recombination directionality factor RDF", | |
| "NAD-dependent DNA ligase" | |
| ], | |
| "nuclease": [ | |
| "exonuclease recombination-associated", | |
| "endonuclease V N-glycosylase UV repair enzyme", | |
| "DNA endonuclease", | |
| "endonuclease", | |
| "intron encoded nuclease", | |
| "exonuclease VII", | |
| "DNA endonuclease V", | |
| "anti-restriction nuclease", | |
| "exonuclease", | |
| "HNH endonuclease", | |
| "DNA polymerase exonuclease subunit", | |
| "3'-5' exonuclease", | |
| "DNA repair exonuclease", | |
| "endoribonuclease", | |
| "ParB-like partition nuclease", | |
| "DenB-like DNA endonuclease IV", | |
| "Ref-like RecA filament endonuclease", | |
| "homing endonuclease with GIY-YIG motif", | |
| "restriction enzyme I", | |
| "intron-like DNA endonuclease", | |
| "SbcC-like subunit of palindrome specific endonuclease", | |
| "restriction enzyme III", | |
| "NinG/ Rap DNA junction specific endonuclease", | |
| "ERCC4-type nuclease", | |
| "homing endonuclease", | |
| "restriction endonuclease II", | |
| "ribonuclease toxin of AT system", | |
| "nuclease", | |
| "restriction endonuclease", | |
| "RecE-like recombination exonuclease", | |
| "homing endonuclease with LAGLIDADG motif", | |
| "Cas4-domain exonuclease", | |
| "exonuclease V", | |
| "SbcD-like subunit of palindrome specific endonuclease", | |
| "RecJ-like ssDNA exonuclease", | |
| "endonuclease VII", | |
| "endonuclease nicking abasic sites generated by host uracil glycosylase Ung", | |
| "exonuclease VIII", | |
| "ribonuclease" | |
| ], | |
| "DNA_polymerase": [ | |
| "DNA polymerase III theta subunit", | |
| "clamp loader of DNA polymerase", | |
| "DNA polymerase processivity factor", | |
| "DNA polymerase exonuclease subunit", | |
| "DNA polymerase", | |
| "DNA polymerase I" | |
| ], | |
| "terminase": [ | |
| "terminase small subunit", | |
| "terminase large subunit", | |
| "terminase" | |
| ], | |
| "annealing": [ | |
| "single strand annealing protein", | |
| "Sak4-like ssDNA annealing protein", | |
| "Sak-like ssDNA annealing protein", | |
| "RecT-like ssDNA annealing protein", | |
| "Gp2.5-like ssDNA binding protein and ssDNA annealing protein", | |
| "Erf-like ssDNA annealing protein", | |
| "Bet-like ssDNA annealing protein" | |
| ], | |
| "helicase": [ | |
| "Holliday junction branch migration helicase", | |
| "Dda-like helicase", | |
| "DNA helicase loader", | |
| "DnaD-like helicase loader", | |
| "P-like helicase loader", | |
| "helicase subunit of the DNA excision repair complex", | |
| "replication helicase", | |
| "DnaB-like replicative helicase", | |
| "DnaC-like helicase loader", | |
| "DNA helicase", | |
| "primosomal protein", | |
| "helicase", | |
| "helicase loader" | |
| ], | |
| "primase": [ | |
| "primase", | |
| "DNA primase" | |
| ], | |
| "ejection": [ | |
| "pilot protein for DNA ejection", | |
| "internal virion protein with endolysin domain", | |
| "internal virion protein", | |
| "internal virion lysozyme motif", | |
| "internal head protein", | |
| "DNA ejection protein", | |
| "DNA ejection" | |
| ], | |
| "replication_initiation": [ | |
| "rolling circle DNA replication initiation", | |
| "replication initiation protein", | |
| "replication initiation O-like", | |
| "replication initiation by nicking", | |
| "DnaA-like replication initiation protein", | |
| "DNA replication initiation" | |
| ], | |
| "exclude_neg_nuclease": [ | |
| "HTH DNA binding protein", | |
| "DNA binding protein", | |
| "DNA binding domain", | |
| "HTH DNA binding domain protein", | |
| "CRISPR/Cas system associated" | |
| ], | |
| "exclude_neg_primase_helicase": [ | |
| "replicative helicase-primase", | |
| "DNA primase/helicase", | |
| "DNA polymerase/primase", | |
| "HTH DNA binding protein", | |
| "DNA binding protein", | |
| "DNA binding domain", | |
| "HTH DNA binding domain protein" | |
| ], | |
| "exclude_neg_DNA_binding_subtypes": [ | |
| "HTH DNA binding protein", | |
| "DNA binding protein", | |
| "DNA binding domain", | |
| "HTH DNA binding domain protein" | |
| ], | |
| "transcriptional_regulator": [ | |
| "Rha-like transcriptional regulator", | |
| "sigma factor for late transcription", | |
| "RinB-like transcriptional activator", | |
| "protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE", | |
| "transcriptional regulator, D5-like", | |
| "transcriptional repressor", | |
| "sigma factor", | |
| "cro-like repressor", | |
| "CIII anti-termination", | |
| "Alt-like transcription activator", | |
| "transcriptional regulator WhiB-like", | |
| "CI-like repressor", | |
| "CopG-like transcriptional repressor", | |
| "Cox-like excisionase and repressor", | |
| "MarR family transcrition regulator", | |
| "CII-like regulator", | |
| "Mrh transcription modulator under heat shock", | |
| "transcription factor", | |
| "Arc-like DNA binding domain", | |
| "anti-repressor Ant", | |
| "transcriptional regulator", | |
| "FmdB-like transcriptional regulator", | |
| "RNA polymerase sigma factor", | |
| "Lpa-like transcriptional activator", | |
| "anti-repressor", | |
| "inhibitor of transcription initiation and antiterminator", | |
| "WhiB transcriptional factor", | |
| "MotB-like transcriptional regulator", | |
| "excisionase and transcriptional regulator", | |
| "MotA-like activator of middle period transcription", | |
| "Ren-like exclusion protein", | |
| "BstA abortive infection system, replication inhibitor", | |
| "Nun-like transcription termination factor", | |
| "late transcriptional activator", | |
| "anti-termination protein N-like", | |
| "transcription antiterminator", | |
| "Arc-like repressor", | |
| "sigma-K factor", | |
| "starvation-inducible transcriptional regulator", | |
| "late promoter transcriptional regulator", | |
| "MerR-like transcriptional regulator", | |
| "Arc-like transcriptional regulator", | |
| "anti-termination protein Q-like", | |
| "transcriptional activator", | |
| "late sigma transcription factor", | |
| "inhibitor of host transcription", | |
| "CII-like transcriptional activator" | |
| ], | |
| "exclude_neg_regulator": [ | |
| "HTH DNA binding protein", | |
| "DNA binding protein", | |
| "DNA binding domain", | |
| "HTH DNA binding domain protein" | |
| ], | |
| "transcriptional_activator": [ | |
| "RinB-like transcriptional activator", | |
| "MotA-like activator of middle period transcription", | |
| "transcriptional activator", | |
| "late transcriptional activator", | |
| "Lpa-like transcriptional activator", | |
| "Alt-like transcription activator", | |
| "CII-like transcriptional activator", | |
| "CII-like regulator" | |
| ], | |
| "exclude_neg_activator": [ | |
| "Arc-like transcriptional regulator", | |
| "CsrA-like regulator", | |
| "FmdB-like transcriptional regulator", | |
| "MarR family transcrition regulator", | |
| "MerR-like transcriptional regulator", | |
| "Mrh transcription modulator under heat shock", | |
| "Rha-like transcriptional regulator", | |
| "excisionase and transcriptional regulator", | |
| "late promoter transcriptional regulator", | |
| "transcriptional regulator", | |
| "transcriptional regulator WhiB-like", | |
| "transcriptional regulator, D5-like" | |
| ], | |
| "transcriptional_repressor": [ | |
| "inhibitor of host transcription", | |
| "inhibitor of transcription initiation and antiterminator", | |
| "protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE", | |
| "transcriptional repressor", | |
| "cro-like repressor", | |
| "BstA abortive infection system, replication inhibitor", | |
| "CI-like repressor", | |
| "CopG-like transcriptional repressor", | |
| "Cox-like excisionase and repressor", | |
| "Arc-like repressor", | |
| "Nun-like transcription termination factor" | |
| ], | |
| "exclude_neg_repressor": [ | |
| "Arc-like transcriptional regulator", | |
| "CsrA-like regulator", | |
| "FmdB-like transcriptional regulator", | |
| "MarR family transcrition regulator", | |
| "MerR-like transcriptional regulator", | |
| "Mrh transcription modulator under heat shock", | |
| "Rha-like transcriptional regulator", | |
| "excisionase and transcriptional regulator", | |
| "late promoter transcriptional regulator", | |
| "transcriptional regulator", | |
| "transcriptional regulator WhiB-like", | |
| "transcriptional regulator, D5-like" | |
| ], | |
| "phosphorylation": [ | |
| "thymidylate kinase", | |
| "thymidine kinase", | |
| "serine-threonine kinase", | |
| "ribose-phosphate pyrophosphokinase", | |
| "pyrophosphatase", | |
| "protein kinase; inhibitor of host transcription; positively regulates RNaseIII; negatively on RNaseE", | |
| "polynucleotide kinase/phosphorylase", | |
| "polynucleotide kinase", | |
| "phosphofructokinase", | |
| "phosphatidylglycerophosphatase A", | |
| "phosphatase", | |
| "nucleotide kinase", | |
| "NinI-like serine-threonine phosphatase", | |
| "MazG-like pyrophosphatase", | |
| "kinase", | |
| "guanylate kinase", | |
| "exopolyphosphatase", | |
| "dual specificity phosphatase", | |
| "deoxyribonucleoside 5' monophosphate phosphatase", | |
| "deoxynucleoside monophosphate kinase", | |
| "bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase", | |
| "6-phosphofructokinase", | |
| "3'-phosphatase, 5'-polynucleotide kinase" | |
| ], | |
| "transferase": [ | |
| "tRNA-His guanylyltransferase", | |
| "tRNA nucleotidyltransferase", | |
| "tRNA methyltransferase", | |
| "tRNA amidotransferase", | |
| "SAM-dependent methyltransferase", | |
| "RNA 2'-phosphotransferase", | |
| "ribosomal protein S6 glutaminyl transferase", | |
| "rhodanese-related sulfurtransferase", | |
| "queuine tRNA-ribosyltransferase", | |
| "phosphoribosyl transferase", | |
| "O-acetyltransferase", | |
| "nucleotidyltransferase", | |
| "nucleoside deoxyribosyltransferase", | |
| "nucleoside 2-deoxyribosyltransferase", | |
| "Nol-like carbamoyltransferase", | |
| "nicotinamide-nucleotide adenylyltransferase", | |
| "nicotinamide phosphoribosyl transferase", | |
| "methyltransferase", | |
| "L-glutamine-D-fructose-6-phosphate aminotransferase", | |
| "GtrB glycosyltransferase for O-antigen conversion", | |
| "glycosyltransferase", | |
| "glutamine amidotransferase", | |
| "glucosyltransferase", | |
| "gamma-glutamyl cyclotransferase", | |
| "galactosyl transferase", | |
| "Galactose-3-O-sulfotransferase", | |
| "DNA methyltransferase", | |
| "cytidyltransferase", | |
| "cyanobacterial phosphoribosylglycinamide formyltransferase", | |
| "Bxa ADP-ribosyl transferase", | |
| "bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase", | |
| "beta-glucosyltransferase", | |
| "beta-glucosyl-HMC-alpha-glucosyltransferase", | |
| "beta-1,4-glycosyltransferase", | |
| "aminotransferase", | |
| "Alt-like RNA polymerase ADP-ribosyltransferase", | |
| "alpha-glucosyltransferase", | |
| "alpha-2;3-sialyltransferase", | |
| "ADP-ribosyltransferase exoenzyme toxin", | |
| "ADP-ribosyltransferase", | |
| "acyl-CoA N-acyltransferase", | |
| "acetyltransferase", | |
| "acetyl-CoA acetyltransferase", | |
| "5-phosphoribosylformylglycinamide amidotransferase" | |
| ], | |
| "reductase": [ | |
| "ribonucleotide reductase NrdA-like", | |
| "ribonucleotide reductase large subunit", | |
| "ribonucleotide reductase class Ia beta subunit", | |
| "ribonucleotide reductase alpha subunit", | |
| "ribonucleotide reductase", | |
| "ribonucleoside-diphosphate reductase large subunit", | |
| "ribonucleoside-diphosphate reductase beta subunit", | |
| "ribonucleoside reductase class II", | |
| "ribonucleoside diphosphate reductase small subunit", | |
| "quinone oxidoreductase TQO", | |
| "phosphoadenosine phosphosulfate reductase", | |
| "peptide methionine sulfoxide reductase", | |
| "NrdD-like anaerobic ribonucleotide reductase large subunit", | |
| "NrdA-like aerobic NDP reductase large subunit", | |
| "nitroreductase", | |
| "ferredoxin oxidoreductase", | |
| "Fe-S oxidoreductase", | |
| "FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase", | |
| "dimethyl sulfoxide reductase DmsA", | |
| "dihydrofolate reductase", | |
| "anaerobic ribonucleotide reductase small subunit", | |
| "anaerobic ribonucleoside reductase small subunit", | |
| "anaerobic ribonucleoside reductase large subunit", | |
| "aerobic NDP reductase small subunit" | |
| ], | |
| "defense_systems": [ | |
| "virulence associated", | |
| "Ulx-like anti-restriction", | |
| "PAGK virulence factor", | |
| "ocr-like anti-restriction", | |
| "Hdf-like antirestriction", | |
| "DNA methylase", | |
| "DdrA-like anti-restriction protein", | |
| "dCMP hydroxymethylase", | |
| "DarB-like antirestriction", | |
| "anti-restriction protein", | |
| "anti-restriction nuclease" | |
| ], | |
| "anti-restriction": [ | |
| "Ulx-like anti-restriction", | |
| "restriction alleviation ral", | |
| "ocr-like anti-restriction", | |
| "Lar-like restriction alleviation protein", | |
| "inhibitor of MrcBC restriction", | |
| "Hdf-like antirestriction", | |
| "DdrA-like anti-restriction protein", | |
| "DarB-like antirestriction", | |
| "anti-restriction protein", | |
| "anti-restriction nuclease", | |
| "tRNA methyltransferase", | |
| "SAM-dependent methyltransferase", | |
| "methyltransferase", | |
| "DNA methyltransferase", | |
| "DNA methylase" | |
| ], | |
| "crispr": [ | |
| "type I-F anti-CRISPR protein", | |
| "type I-E anti-CRISPR protein", | |
| "CRISPR/Cas system associated", | |
| "Cas4-domain exonuclease" | |
| ], | |
| "super_infection": [ | |
| "superinfection exclusion; inhibits SieB", | |
| "superinfection exclusion SieA-like", | |
| "superinfection exclusion Sie-like", | |
| "superinfection exclusion", | |
| "SieB superinfection exclusion", | |
| "immunity to superinfection", | |
| "Cor superinfection exclusion protein" | |
| ], | |
| "toxin": [ | |
| "Zot-like toxin", | |
| "toxin-antitoxin system HicB-like", | |
| "toxin of TA system", | |
| "toxin", | |
| "Shiga toxin subunit B", | |
| "Shiga toxin subunit A", | |
| "ribonuclease toxin of AT system", | |
| "RelE-like toxin", | |
| "plasmid antitoxin with HTH domain", | |
| "Phd-like antitoxin", | |
| "HicB-like antitoxin", | |
| "enterotoxin type A / speL", | |
| "enterotoxin CtxB", | |
| "enterotoxin CtxA", | |
| "Doc-like toxin", | |
| "cytolethal distending toxin C subunit", | |
| "cytolethal distending toxin B subunit", | |
| "cytolethal distending toxin A subunit", | |
| "CTXphi Zot-like toxin", | |
| "antitoxin with HTH domain", | |
| "antitoxin mazE-like", | |
| "antitoxin from a toxin-antitoxin system", | |
| "ADP-ribosyltransferase exoenzyme toxin", | |
| "Panton-Valentine leukocicin" | |
| ], | |
| "sir2": [ | |
| "Sir2 (NAD-dependent deacetylase)" | |
| ], | |
| "category_moron": [ | |
| "Zot-like toxin", | |
| "Ulx-like anti-restriction", | |
| "type I-F anti-CRISPR protein", | |
| "type I-E anti-CRISPR protein", | |
| "toxin-antitoxin system HicB-like", | |
| "toxin of TA system", | |
| "toxin", | |
| "tellurite resistance", | |
| "TciB-like inhibition of cell division or resistance to colicin", | |
| "taurine catabolism dioxygenase", | |
| "T3SS secreted effector Ibe", | |
| "T3SS effector protein EspN", | |
| "superoxide dismutase precursor", | |
| "superinfection exclusion; inhibits SieB", | |
| "superinfection exclusion SieA-like", | |
| "superinfection exclusion Sie-like", | |
| "superinfection exclusion", | |
| "stringent starvation protein Sspb-like", | |
| "Srd anti-sigma factor", | |
| "sporulation stage III protein D", | |
| "sporulation protein", | |
| "SieB superinfection exclusion", | |
| "Shiga toxin subunit B", | |
| "Shiga toxin subunit A", | |
| "RstB sensor of two protein system", | |
| "ribulose-1;5-bisphosphate carboxylase/oxygenase small subunit", | |
| "ribosome associated inhibitor A; zinc finger domain", | |
| "ribosomal protein S6 glutaminyl transferase", | |
| "ribosomal protein S21", | |
| "ribonuclease toxin of AT system", | |
| "RexB-like exclusion protein", | |
| "RexA-like exclusion protein", | |
| "Ren-like exclusion protein", | |
| "RelE-like toxin", | |
| "quinone oxidoreductase TQO", | |
| "queuine tRNA-ribosyltransferase", | |
| "QueE-like radical SAM domain", | |
| "QueD-like 6-pyruvoyl-tetrahydropterin synthase", | |
| "QueC-like queuosine biosynthesis", | |
| "quaternary ammonium compound-resistance protein QacE", | |
| "PufC cytochrome", | |
| "PufB cytochrome subunit", | |
| "PufA cytochrome subunit", | |
| "porphyrin biosynthesis", | |
| "polysaccharide deacetylase", | |
| "polysaccharide chain length determinant protein", | |
| "PnuC-like nicotinamide mononucleotide transport", | |
| "plastoquinol terminal oxidase", | |
| "plasmid antitoxin with HTH domain", | |
| "pilin", | |
| "photosystem II D2", | |
| "photosystem II D1", | |
| "photosystem I psaA/psaB protein", | |
| "phosphoribosylaminoimidazole-succinocarboxamide synthase", | |
| "phosphoribosylaminoimidazole synthetase", | |
| "phosphoheptose isomerase", | |
| "phosphoadenosine phosphosulfate reductase", | |
| "phospho-2-dehydro-3-deoxyheptonate aldolase", | |
| "phosphate transporter subunit", | |
| "Phd-like antitoxin", | |
| "pectin lyase activity", | |
| "pectate lyase", | |
| "PAGK virulence factor", | |
| "PAAR motif of membran proteins", | |
| "ocr-like anti-restriction", | |
| "O-antigen acetylase", | |
| "NrdD-like anaerobic ribonucleotide reductase large subunit", | |
| "NrdC-like thioredoxin", | |
| "NrdA-like aerobic NDP reductase large subunit", | |
| "Nol-like carbamoyltransferase", | |
| "NifU-like Fe-S cluster assembly protein", | |
| "nicotinamide-nucleotide adenylyltransferase", | |
| "MokW-like host killing", | |
| "mobile element MPME", | |
| "MIT family metal ion transporter", | |
| "membrane-flanked domain", | |
| "membrane protein", | |
| "membrane DNA delivery", | |
| "membrane associated protein", | |
| "MazF-like growth inhibitor", | |
| "lipase", | |
| "levanase", | |
| "Lar-like restriction alleviation protein", | |
| "involved in bacteriocin production or immunity", | |
| "inhibitor of MrcBC restriction", | |
| "immunity to superinfection", | |
| "host RecBCD nuclease inhibitor", | |
| "host range and adsorption protein", | |
| "host nuclease inhibitor", | |
| "HicB-like antitoxin", | |
| "Hdf-like antirestriction", | |
| "GtrC-like O-antigen conversion translocase", | |
| "GtrB-like O-antigen conversion", | |
| "GtrB glycosyltransferase for O-antigen conversion", | |
| "GtrA-like O-antigen conversion", | |
| "Gp5.9-like inihibitor of recBCD nuclease", | |
| "Gp5.5-like host HNS inhibition", | |
| "glycosyltransferase", | |
| "glutathionylspermidine synthase", | |
| "glutamine amidotransferase", | |
| "glucosyltransferase", | |
| "gamma-glutamyl cyclotransferase", | |
| "gam-like host nuclease inhibitor", | |
| "galactosyl transferase", | |
| "Galactose-3-O-sulfotransferase", | |
| "FtsK/SpoIIIE-like protein", | |
| "flavodoxin", | |
| "flagellar protein", | |
| "ferrochelatase", | |
| "ferredoxin oxidoreductase", | |
| "ferredoxin", | |
| "FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase", | |
| "enterotoxin type A / speL", | |
| "enterotoxin CtxB", | |
| "enterotoxin CtxA", | |
| "enoyl-CoA hydratase/carnithine racemase-like", | |
| "endonuclease nicking abasic sites generated by host uracil glycosylase Ung", | |
| "dTDP-4-dehydrorhamnose 3,5-epimerase", | |
| "Doc-like toxin", | |
| "dimethyl sulfoxide reductase DmsA", | |
| "decoy of host sigma70", | |
| "decoy of host sigma32", | |
| "DdrA-like anti-restriction protein", | |
| "DarB-like antirestriction", | |
| "cytolethal distending toxin C subunit", | |
| "cytolethal distending toxin B subunit", | |
| "cytolethal distending toxin A subunit", | |
| "cyanobacterial phosphoribosylglycinamide formyltransferase", | |
| "CTXphi Zot-like toxin", | |
| "CpeT-like antenna protein", | |
| "core encoded pilin", | |
| "Cor superinfection exclusion protein", | |
| "colanic acid degradation", | |
| "cobalamin biosynthesis protein", | |
| "chitinase", | |
| "chemotaxis inhibition protein", | |
| "cell division inhibitor", | |
| "cef modifier of supressor tRNAs", | |
| "cation efflux protein", | |
| "Bxa ADP-ribosyl transferase", | |
| "BstA abortive infection system, replication inhibitor", | |
| "beta-lactamase-inhibitor protein BLIP", | |
| "beta-glucosyltransferase", | |
| "beta-1,4-glycosyltransferase", | |
| "arabinose 5-phosphate isomerase", | |
| "antitoxin with HTH domain", | |
| "antitoxin mazE-like", | |
| "antitoxin from a toxin-antitoxin system", | |
| "antimicrobial peptide resistance and lipid A acylation protein PagP", | |
| "anti-sigma factor", | |
| "anti-restriction protein", | |
| "Alt-like RNA polymerase ADP-ribosyltransferase", | |
| "aerobic cobaltochelatase CobT subunit", | |
| "ADP-ribosyltransferase exoenzyme toxin", | |
| "ADP-ribosyltransferase", | |
| "acyl-CoA N-acyltransferase", | |
| "acyl carrier protein", | |
| "activator of host PrrC lysyl-tRNA endonuclease", | |
| "abortive infection resistance protein", | |
| "Abi alpha-like abortive infection mechanism", | |
| "abc2 anti-RecBCD", | |
| "ABC transporter ATP-binding subunit", | |
| "ABC transporter", | |
| "5-phosphoribosylformylglycinamide amidotransferase", | |
| "5'-3' deoxyribonucleotidase", | |
| "2OG-Fe(II) oxygenase" | |
| ], | |
| "category_tr": [ | |
| "WhiB transcriptional factor", | |
| "transcriptional repressor", | |
| "transcriptional regulator, D5-like", | |
| "transcriptional regulator WhiB-like", | |
| "transcriptional regulator", | |
| "transcriptional activator", | |
| "transcription factor", | |
| "transcription antiterminator", | |
| "starvation-inducible transcriptional regulator", | |
| "sigma-K factor", | |
| "sigma factor for late transcription", | |
| "sigma factor", | |
| "RNA polymerase sigma factor", | |
| "RinB-like transcriptional activator", | |
| "Rha-like transcriptional regulator", | |
| "Nun-like transcription termination factor", | |
| "Mrh transcription modulator under heat shock", | |
| "MotB-like transcriptional regulator", | |
| "MotA-like activator of middle period transcription", | |
| "MerR-like transcriptional regulator", | |
| "MarR family transcrition regulator", | |
| "Lpa-like transcriptional activator", | |
| "late transcriptional activator", | |
| "late sigma transcription factor", | |
| "late promoter transcriptional regulator", | |
| "inhibitor of transcription initiation and antiterminator", | |
| "inhibitor of host transcription", | |
| "FmdB-like transcriptional regulator", | |
| "CsrA-like regulator", | |
| "cro-like repressor", | |
| "CopG-like transcriptional repressor", | |
| "CIII anti-termination", | |
| "CII-like transcriptional activator", | |
| "CII-like regulator", | |
| "CI-like repressor", | |
| "Arc-like transcriptional regulator", | |
| "Arc-like repressor", | |
| "Arc-like DNA binding domain", | |
| "anti-termination protein Q-like", | |
| "anti-termination protein N-like", | |
| "anti-repressor Ant", | |
| "anti-repressor", | |
| "Alt-like transcription activator" | |
| ], | |
| "category_head": [ | |
| "virion structural protein", | |
| "terminase small subunit", | |
| "terminase large subunit", | |
| "terminase", | |
| "tail tip protein Tal", | |
| "structural protein with Ig domain", | |
| "structural protein", | |
| "spore coat protein", | |
| "scaffolding protein", | |
| "pyramid forming protein", | |
| "prohead protease inhibitor", | |
| "prohead", | |
| "portal protein", | |
| "PmgS-like head morphogenesis", | |
| "PmgG-like head morphogenesis", | |
| "PmgC-like head morphogenesis", | |
| "PmgB-like head morphogenesis", | |
| "morphogenesis (protein I of M13)", | |
| "minor head protein; receptor binding", | |
| "minor head protein inhibitor of protease", | |
| "minor head protein and DNA pilot", | |
| "minor head protein Ace-like", | |
| "minor head protein", | |
| "minor coat protein", | |
| "major spike protein", | |
| "major head protein", | |
| "major head and protease protein", | |
| "major coat protein", | |
| "major capsid protein", | |
| "internal virion protein with endolysin domain", | |
| "internal virion protein", | |
| "internal virion lysozyme motif", | |
| "internal head protein", | |
| "Hoc-like head decoration", | |
| "head vertex assembly chaperone", | |
| "head scaffolding protein", | |
| "head protein", | |
| "head morphogenesis", | |
| "head maturation protease", | |
| "head fiber protein", | |
| "head decoration protein", | |
| "head decoration", | |
| "head assembly", | |
| "endolysin", | |
| "DNA packaging chaperone FI", | |
| "attachment protein", | |
| "assembly (protein IV of M13)" | |
| ], | |
| "category_DNA_RNA": [ | |
| "virion RNA polymerase", | |
| "valyl tRNA synthetase modifier", | |
| "UvsY-like recombination mediator", | |
| "uracil-DNA glycosylase", | |
| "UmuD-like protein", | |
| "tyrosyl-tRNA synthetase", | |
| "tubulin PhuZ", | |
| "tRNA-His guanylyltransferase", | |
| "tRNA synthetase", | |
| "tRNA splicing ligase RtcB", | |
| "tRNA splicing ligase", | |
| "tRNA nucleotidyltransferase", | |
| "tRNA amidotransferase", | |
| "thymidylate synthase complementing protein", | |
| "thymidylate synthase", | |
| "thioredoxin domain", | |
| "Sir2 (NAD-dependent deacetylase)", | |
| "single strand DNA binding protein", | |
| "single strand annealing protein", | |
| "segregation and condensation complex subunit ScpB", | |
| "SbcD-like subunit of palindrome specific endonuclease", | |
| "SbcC-like subunit of palindrome specific endonuclease", | |
| "Sak4-like ssDNA annealing protein", | |
| "Sak-like ssDNA annealing protein", | |
| "RuvC-like Holliday junction resolvase", | |
| "RusA-like Holliday junction resolvase", | |
| "RpbA RNA polymerase binding protein", | |
| "rolling circle DNA replication initiation", | |
| "Rnase H", | |
| "Rnase E", | |
| "RNA-dependent RNA polymerase", | |
| "RNA-binding protein", | |
| "RNA replicase beta subunit", | |
| "RNA polymerase inhibitor", | |
| "RNA polymerase binding", | |
| "RNA polymerase beta subunit", | |
| "RNA polymerase ADP-ribosylase", | |
| "RNA polymerase", | |
| "RNA ligase", | |
| "RNA 2'-phosphotransferase", | |
| "ribonucleotide reductase NrdA-like", | |
| "ribonucleotide reductase large subunit", | |
| "ribonucleotide reductase class Ia beta subunit", | |
| "ribonucleotide reductase alpha subunit", | |
| "ribonucleotide reductase", | |
| "ribonucleoside-diphosphate reductase large subunit", | |
| "ribonucleoside-diphosphate reductase beta subunit", | |
| "ribonucleoside reductase class II", | |
| "ribonucleoside diphosphate reductase small subunit", | |
| "ribonuclease", | |
| "Reverse transcriptase", | |
| "restriction enzyme III", | |
| "restriction enzyme I", | |
| "restriction endonuclease II", | |
| "restriction endonuclease", | |
| "restriction alleviation ral", | |
| "replisome organizer DnaA-like", | |
| "replisome organizer", | |
| "replicative helicase-primase", | |
| "replication terminator", | |
| "replication protein", | |
| "replication origin binding", | |
| "replication initiation protein", | |
| "replication initiation O-like", | |
| "replication initiation by nicking", | |
| "replication helicase", | |
| "replication", | |
| "regulator of chromosome condensation", | |
| "Ref-like RecA filament endonuclease", | |
| "RecX-like filament modulator", | |
| "RecT-like ssDNA annealing protein", | |
| "RecJ-like ssDNA exonuclease", | |
| "RecE-like recombination exonuclease", | |
| "RecA filament binding protein DinI", | |
| "primosomal protein", | |
| "primase", | |
| "polymerase", | |
| "polarity suppression Psu-like by overcoming Rho", | |
| "plasmid stability", | |
| "partition protein", | |
| "ParB-like partition protein", | |
| "ParB-like partition nuclease", | |
| "ParB C-terminal domain", | |
| "ParA-like partition protein", | |
| "Panton-Valentine leukocicin", | |
| "P-like helicase loader", | |
| "nucloid associated Lsr2-like", | |
| "nucleotidyltransferase", | |
| "nucleotide-sugar epimerase", | |
| "nucleotidase", | |
| "nucleoside triphosphate pyrophosphohydrolase", | |
| "nucleoside deoxyribosyltransferase", | |
| "nucleoside 2-deoxyribosyltransferase", | |
| "nucleoid associated protein", | |
| "nuclease", | |
| "nuclear shell protein", | |
| "NinG/ Rap DNA junction specific endonuclease", | |
| "NinB/ Orf homologous recombination mediator", | |
| "nicking at origin of replication", | |
| "Ndd-like nucleoid disruption protein", | |
| "NAD-dependent DNA ligase", | |
| "N4-like RNA polymerase", | |
| "Mu Gam-like end protection", | |
| "Lsr2-like DNA bridging protein", | |
| "Ku-like DNA end binding", | |
| "intron-like DNA endonuclease", | |
| "intron encoded nuclease", | |
| "HTH DNA binding protein", | |
| "HTH DNA binding domain protein", | |
| "homing endonuclease with LAGLIDADG motif", | |
| "homing endonuclease with GIY-YIG motif", | |
| "homing endonuclease", | |
| "Holliday junction resolvase", | |
| "Holliday junction branch migration helicase", | |
| "HNH endonuclease", | |
| "histone family DNA-binding", | |
| "histidyl tRNA synthetase", | |
| "helicase subunit of the DNA excision repair complex", | |
| "helicase loader", | |
| "helicase", | |
| "gpCom control of modification", | |
| "Gp2.5-like ssDNA binding protein and ssDNA annealing protein", | |
| "GP16.7-like replication protein", | |
| "goF mRNA metabolism modulator", | |
| "genome terminal protein", | |
| "exonuclease VIII", | |
| "exonuclease VII", | |
| "exonuclease V", | |
| "exonuclease recombination-associated", | |
| "exonuclease", | |
| "Erf-like ssDNA annealing protein", | |
| "Erf recombination cofactor Arf", | |
| "ERCC4-type nuclease", | |
| "endoribonuclease", | |
| "endonuclease VII", | |
| "endonuclease V N-glycosylase UV repair enzyme", | |
| "endonuclease", | |
| "dUTPase", | |
| "dsDNA binding protein", | |
| "DprA-like DNA recombination-mediator protein", | |
| "DnaD-like helicase loader", | |
| "DnaC-like helicase loader", | |
| "DnaB-like replicative helicase", | |
| "DnaA-like replication initiation protein", | |
| "DNA topoisomerase II large subunit", | |
| "DNA topoisomerase II", | |
| "DNA topoisomerase", | |
| "DNA terminal protein", | |
| "DNA sliding clamp inhibitor; arrest of S.aureus DNA synthesis", | |
| "DNA replication initiation", | |
| "DNA repair protein", | |
| "DNA repair photolyase", | |
| "DNA repair exonuclease", | |
| "DNA primase/helicase", | |
| "DNA primase", | |
| "DNA polymerase/primase", | |
| "DNA polymerase processivity factor", | |
| "DNA polymerase III theta subunit", | |
| "DNA polymerase I", | |
| "DNA polymerase exonuclease subunit", | |
| "DNA polymerase", | |
| "DNA methylase", | |
| "DNA ligase", | |
| "DNA invertase", | |
| "DNA helicase loader", | |
| "DNA helicase", | |
| "DNA endonuclease V", | |
| "DNA endonuclease", | |
| "DNA end protector", | |
| "DNA ejection protein", | |
| "DNA ejection", | |
| "DNA condensation", | |
| "DNA circularization", | |
| "DNA binding protein", | |
| "DNA binding domain", | |
| "Dmd discriminator of mRNA degradation", | |
| "dihydrofolate reductase", | |
| "deoxycytidinylate deaminase", | |
| "DenB-like DNA endonuclease IV", | |
| "Dda-like helicase", | |
| "dCTP deaminase", | |
| "dCMP hydroxymethylase", | |
| "dCMP deaminase", | |
| "dATP triphosphohydrolase", | |
| "dATP / dGTP pyrophosphohydrolase", | |
| "CRISPR/Cas system associated", | |
| "clamp loader of DNA polymerase", | |
| "Cas4-domain exonuclease", | |
| "Bet-like ssDNA annealing protein", | |
| "Avd protein of DGR", | |
| "ATP-dependent DNA ligase", | |
| "anti-restriction nuclease", | |
| "anaerobic ribonucleotide reductase small subunit", | |
| "anaerobic ribonucleoside reductase small subunit", | |
| "anaerobic ribonucleoside reductase large subunit", | |
| "alkylated DNA repair", | |
| "aerobic NDP reductase small subunit", | |
| "3'-5' exonuclease", | |
| "2-aminooxy adenylosuccinate synthetase" | |
| ], | |
| "category_connector": [ | |
| "upper collar connector", | |
| "tail terminator", | |
| "tail completion or Neck1 protein", | |
| "tail completion", | |
| "pre-neck appendage protein", | |
| "neck protein", | |
| "neck passage structure protein", | |
| "neck passage structure", | |
| "head-tail joining", | |
| "head-tail connector protein", | |
| "head-tail adaptor Ad3", | |
| "head-tail adaptor Ad2", | |
| "head-tail adaptor Ad1", | |
| "head-tail adaptor", | |
| "head closure Hc3", | |
| "head closure Hc2", | |
| "head closure Hc1", | |
| "head closure", | |
| "appendage", | |
| "adaptor Ad4" | |
| ], | |
| "category_integration": [ | |
| "transposase", | |
| "site-specific recombination directionality factor RDF", | |
| "recombination directionality factor", | |
| "integrase", | |
| "excisionase and transcriptional regulator", | |
| "excisionase", | |
| "DNA transposition protein", | |
| "Cox-like excisionase and repressor" | |
| ], | |
| "category_tail": [ | |
| "tail tubular protein", | |
| "tail tube protein", | |
| "tail tube", | |
| "tail spike protein with colonic acid degradation activity", | |
| "tail spike protein", | |
| "tail sheath stabilizer", | |
| "tail sheath and receptor binding protein", | |
| "tail sheath", | |
| "tail protein XkdN-like", | |
| "tail protein with lysin activity", | |
| "tail protein and host specificity", | |
| "tail protein", | |
| "tail needle protein", | |
| "tail needle knob", | |
| "tail length tape measure protein chaperone", | |
| "tail length tape measure protein", | |
| "tail fiber protein; Ig-domain containing", | |
| "tail fiber protein; host specificity", | |
| "tail fiber protein/ lysozyme", | |
| "tail fiber protein proximal subunit", | |
| "tail fiber protein and host specificity", | |
| "tail fiber protein", | |
| "tail fiber chaperone", | |
| "tail fiber assembly protein", | |
| "tail fiber assembly", | |
| "tail fiber adhesin", | |
| "tail collar protein", | |
| "tail collar fiber protein", | |
| "tail chaperonin", | |
| "tail chaperone protein", | |
| "tail associated lysin", | |
| "tail assembly protein", | |
| "Tail assembly chaperone", | |
| "tail assembly chaperone", | |
| "tail appendage", | |
| "straight fibre tail protein", | |
| "short tail fiber protein", | |
| "RNA ligase and tail fiber protein attachment catalyst", | |
| "receptor binding tail protein", | |
| "pilot protein for DNA ejection", | |
| "pentameric base spike protein", | |
| "minor tail protein with lysin activity", | |
| "minor tail protein", | |
| "major tail protein with Ig-like domain", | |
| "major tail protein", | |
| "lytic tail protein", | |
| "lytic tail fiber protein", | |
| "lower collar", | |
| "long tail fiber protein proximal connector", | |
| "long tail fiber protein distal subunit", | |
| "L-shaped tail fiber protein assembly", | |
| "hinge connector of long tail fiber protein distal connector", | |
| "Gpu-like tail protein", | |
| "fibritin neck whisker", | |
| "EPS depolymerase", | |
| "distal tail protein Dit", | |
| "distal tail protein", | |
| "collar tail protein for L-shaped tail fibre attachment", | |
| "collagen like minor tail", | |
| "central tail fiber J", | |
| "capsid assembly protein", | |
| "baseplate wedge tail fiber protein connector", | |
| "baseplate wedge subunit", | |
| "baseplate wedge initiator", | |
| "baseplate tail tube cap", | |
| "baseplate spike", | |
| "baseplate protein", | |
| "baseplate hub subunit and tail lysozyme", | |
| "baseplate hub subunit and tail length", | |
| "baseplate hub distal subunit", | |
| "baseplate hub assembly catalyst", | |
| "baseplate hub and tail lysozyme", | |
| "baseplate hub", | |
| "baseplate assembly protein", | |
| "base plate tail tube protein", | |
| "adhesin" | |
| ], | |
| "category_lysis": [ | |
| "spanin", | |
| "Rz-like spanin", | |
| "RIIB lysis inhibitor", | |
| "RIIA lysis inhibitor", | |
| "lysozyme domain-containing protein", | |
| "lysM motif protein", | |
| "lysis inhibition; accessory protein", | |
| "lysis inhibition", | |
| "lysis determining protein", | |
| "i-spanin", | |
| "holin/anti-holin", | |
| "holin", | |
| "endolysin; lysM motif", | |
| "endolysin; inhibits RNA polymerase", | |
| "endolysin", | |
| "cysteine protease", | |
| "amidase" | |
| ] | |
| } |