Merge branch 'main' of github.com:Angione-Lab/Shape2Force

experiments/results/eval/model_params.csv

@@ -1,4 +1,22 @@
 model,n_params_M,epoch,val_loss
+s2f_full_seed0,77.002341,22.0,0.6845365777248289
+s2f_full_seed1,77.002341,32.0,0.7641608729595091
+s2f_no_force_seed0,77.002341,36.0,0.6944503726028814
+s2f_no_force_seed1,77.002341,31.0,0.7536247052797457
+s2f_no_gan_seed0,77.002341,21.0,0.721968437113413
+s2f_no_gan_seed1,77.002341,34.0,0.7040372549033747
+s2f_no_substrate_no_gan_seed0,77.000613,25.0,0.598808929687593
+s2f_no_substrate_no_gan_seed1,77.000613,38.0,0.6280873359703436
+s2f_no_substrate_seed0,77.000613,23.0,0.6303678663765512
+s2f_no_substrate_seed1,77.000613,17.0,0.6032634014036597
+unet_gan_no_substrate_seed0,31.036481,21.0,0.6770522376386131
+unet_gan_no_substrate_seed1,31.036481,1.0,0.6818016338639143
+unet_gan_seed0,31.037633,18.0,0.7331220245942837
+unet_gan_seed1,31.037633,24.0,0.8099774224002186
+unet_no_substrate_seed0,31.036481,12.0,0.646111976809618
+unet_no_substrate_seed1,31.036481,29.0,0.6637544072255855
+unet_seed0,31.037633,21.0,0.7371067419284727
+unet_seed1,31.037633,31.0,0.7615440138956395
 released_singlecell,77.002341,,
 released_spheroid_GN,77.000613,,
 supervised_spheroid_FN,11.783428,,

experiments/results/eval/summary.csv

@@ -1,4 +1,258 @@
 model,manifest,substrate_mode,n,mse_mean,mse_std,ms_ssim_mean,ms_ssim_std,pixel_r_mean,pixel_r_std,rme_mean,rme_std,mean_gt_Pa_mean,mean_gt_Pa_std,mean_pred_Pa_mean,mean_pred_Pa_std,gt_frac_saturated_mean,gt_frac_saturated_std,seconds_per_image,pred_over_gt
+<<<<<<< HEAD
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+unet_seed1,test_fibro_DMSO_setII,legacy,11,0.008314894364130727,0.005774868766718388,0.889673953706568,0.03140080498095143,0.5842346992638722,0.15151013653880532,0.6263988018035889,0.07883527714845324,26.922392574223604,8.656309600517519,13.7712743810632,2.2484894597981104,0.0009989304976029546,0.001193270015423396,0.0010340213775634547,0.5115174791057864
+unet_seed1,test_fibro_TGFb_setI,legacy,15,0.007237924262881247,0.005826993260715331,0.8919121464093526,0.04439058935284195,0.4880563950126084,0.13041191245260728,0.6062942643960317,0.08412574355309976,24.50147196650505,8.277265561301697,13.010410157342752,1.3092826232484662,0.0006481806437174341,0.0010562970743840123,0.0011862754821776933,0.5310052463431073
+unet_seed1,test_fibro_Y27632_setI,legacy,16,0.0023576642997795313,0.003468691247317946,0.9228644259274006,0.03762459170283293,0.27546098957799564,0.1990886059353804,0.5931138209998608,0.08407543216368647,17.703224846627563,7.054585229165719,14.080598775763065,1.6270311073155472,2.723932266235e-05,0.00010895729064939998,0.00108483433723445,0.7953691430657842
+unet_seed1,test_fibro_Y27632_setII,legacy,20,0.002529909049917425,0.0017941052399756178,0.9199862539768219,0.02635293299150093,0.5905185210696995,0.16741241180482025,0.5762535378336906,0.10192889207166421,17.667164374142885,4.5439277959248345,14.190186373889446,1.9763815197320727,5.369186401366938e-05,0.00016632603301397394,0.00104012489318844,0.8031954689150775
+unet_seed1,test_fibro_fibronectin_setI,legacy,40,0.0032456214888952153,0.003434821068665475,0.9198339089751244,0.039578591081581765,0.6018064859264587,0.18237442519641475,0.5458972863852978,0.12961089049850422,18.936000810936093,6.403141493803271,12.861821136903018,1.9595425563856077,0.000261020660400378,0.0006666419848302162,0.001111567020416215,0.6792258442170609
+unet_seed1,test_u2os_6kPa,legacy,39,0.025203555308950968,0.019440022684129716,0.6127494802841773,0.09033921807495938,0.25941772816773057,0.13315477293143968,0.7514002399566846,0.053234500789584506,72.38253683615953,22.514049794991656,22.496219963217392,6.844349169425874,0.0023382871578900974,0.004895436215126899,0.0011056447640443103,0.31079623548064356
+=======
 baseline_mean_map_singlecell,alltune_val,none,81,0.008867533338532078,0.008444125467759031,0.861701829197966,0.035906803708404156,0.41052920249821545,0.15954584047698242,1.1574280416523968,0.6312656594344455,24.59675819831498,12.09090158606753,30.23826703429222,0.0,0.002138373292522645,0.003586675581752635,0.0002839241498782049,1.2293598526477247
 baseline_mean_map_singlecell,test_fibro_1kPa_setIII,none,17,0.0029763451928053178,0.002273231475613394,0.9033869399743921,0.01872579621679855,0.15721677869894363,0.1778367883417737,0.7348172664642334,0.16726677632791806,24.97328571317827,9.45682709856301,30.23826703429222,0.0,0.0,0.0,0.00023510876823872352,1.2108245339272936
 baseline_mean_map_singlecell,test_fibro_DMSO_setI,none,27,0.007250574865826808,0.005655140666440696,0.8667675676169219,0.030754783101293093,0.4275686668425483,0.1584578635982929,1.1128620902697246,0.38763939451523194,22.690155784840936,9.65334822627502,30.23826703429222,0.0,0.0011002929122359444,0.0017828783273705856,0.0002962748209635148,1.3326601774366882
@@ -251,4 +505,5 @@ unet_seed1,test_fibro_Y27632_setI,legacy,16,0.0023576642997795313,0.003468691247
 unet_seed1,test_fibro_Y27632_setII,legacy,20,0.002529909049917425,0.0017941052399756178,0.9199862539768219,0.02635293299150093,0.5905185210696995,0.16741241180482025,0.5762535378336906,0.10192889207166422,17.667164374142885,4.543927795924835,14.190186373889446,1.9763815197320727,5.369186401366938e-05,0.00016632603301397394,0.00104012489318844,0.8031954689150775
 unet_seed1,test_fibro_fibronectin_setI,legacy,40,0.0032456214888952153,0.003434821068665475,0.9198339089751244,0.03957859108158177,0.6018064859264587,0.18237442519641475,0.5458972863852978,0.12961089049850422,18.936000810936093,6.40314149380327,12.861821136903018,1.9595425563856077,0.000261020660400378,0.0006666419848302161,0.001111567020416215,0.6792258442170609
 unet_seed1,test_u2os_6kPa,legacy,39,0.025203555308950968,0.019440022684129716,0.6127494802841773,0.0903392180749594,0.25941772816773057,0.13315477293143968,0.7514002399566846,0.053234500789584506,72.38253683615953,22.514049794991656,22.496219963217392,6.844349169425874,0.0023382871578900974,0.004895436215126899,0.0011056447640443103,0.31079623548064356
+>>>>>>> dc31c70c28a2ef1c160986f495985204de87c4fe
 unet_seed1,zenodo_v1_test,legacy,46,0.00936730446688745,0.009806955208855243,0.8826427161693573,0.044340123170899685,0.6504549501304828,0.1254012605447015,0.7062365594117538,0.16269038125151805,26.68617501773912,13.512588866281218,15.705596453145795,2.228080111054024,0.002364386682924989,0.003851346753000209,0.0011378837668376955,0.5885293206203512