Update README.md
Browse files
README.md
CHANGED
|
@@ -1,288 +1,39 @@
|
|
| 1 |
-
---
|
| 2 |
-
model_name: Plant Disease Scanner
|
| 3 |
-
model_type: Image Classification
|
| 4 |
-
license: cc-by-sa-4.0
|
| 5 |
-
description: >-
|
| 6 |
-
CNN model for classifying plant diseases from leaf images, detecting 38
|
| 7 |
-
classes.
|
| 8 |
-
intended_use:
|
| 9 |
-
- Identify plant diseases
|
| 10 |
-
- Provide treatment guides
|
| 11 |
-
training_data:
|
| 12 |
-
dataset_name: Plant Village Dataset
|
| 13 |
-
dataset_link: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset
|
| 14 |
-
structure:
|
| 15 |
-
- 87k RGB images of 38 types of leaves
|
| 16 |
-
- 'Train: 70,295 images (80%)'
|
| 17 |
-
- 'Valid: 17,572 images (20%)'
|
| 18 |
-
evaluation_metrics:
|
| 19 |
-
- Accuracy
|
| 20 |
-
- Confusion Matrix
|
| 21 |
-
additional_info:
|
| 22 |
-
prerequisites:
|
| 23 |
-
- Python 3.9
|
| 24 |
-
- Anaconda3
|
| 25 |
-
- NVIDIA GPU
|
| 26 |
-
- TensorFlow 2.10
|
| 27 |
-
installation: Follow instructions in the repository.
|
| 28 |
-
model_architecture: 5 x [Conv2D + MaxPooling] with Dense layers.
|
| 29 |
-
error_handling: Handles invalid images and missing data.
|
| 30 |
-
language:
|
| 31 |
-
- en
|
| 32 |
-
metrics:
|
| 33 |
-
- accuracy
|
| 34 |
-
pipeline_tag: image-classification
|
| 35 |
-
tags:
|
| 36 |
-
- plant-disease
|
| 37 |
-
- cnn
|
| 38 |
-
- image-classification
|
| 39 |
-
---
|
| 40 |
-
|
| 41 |
-
|
| 42 |
-
# Plant Disease Scanner
|
| 43 |
-
|
| 44 |
-
# Overview
|
| 45 |
-
This project uses a Convolutional Neural Network (CNN) to classify plant diseases based on leaf images from the Plant Village dataset.
|
| 46 |
-
The model is trained to detect 38 different classes of plant diseases and healthy leaves.
|
| 47 |
-
|
| 48 |
-
# Dataset
|
| 49 |
-
- **Plant Village Dataset**:
|
| 50 |
-
- [Kaggle Link](https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset)
|
| 51 |
-
- [Original GitHub](https://github.com/spMohanty/PlantVillage-Dataset)
|
| 52 |
-
|
| 53 |
-
- **Dataset Structure**:
|
| 54 |
-
- 87k RGB images of 38 types of crop leaves
|
| 55 |
-
- **Train**: 70,295 images (80%)
|
| 56 |
-
- **Valid**: 17,572 images (20%)
|
| 57 |
-
- **Test**: 33 images for prediction
|
| 58 |
-
- Subfolders named as `[plant.name_disease.name]` or `[plant.name_healthy]`
|
| 59 |
-
|
| 60 |
-
# Prerequisites
|
| 61 |
-
- Python 3.9
|
| 62 |
-
- Anaconda3 2024.10-1 (64-bit)
|
| 63 |
-
- NVIDIA GPU with latest drivers
|
| 64 |
-
- Microsoft Visual C++ 2015-2022 (x64)
|
| 65 |
-
- TensorFlow 2.10 (last version with GPU support)
|
| 66 |
-
|
| 67 |
-
# Installation (Anaconda Prompt)
|
| 68 |
-
|
| 69 |
-
nvidia-smi
|
| 70 |
-
### Shows GPU driver, current GPU usage & CUDA version
|
| 71 |
-
|
| 72 |
-
conda create -n tensorflow_environment python==3.9
|
| 73 |
-
### Create new environment named 'tensorflow_environment' with Python 3.9
|
| 74 |
-
|
| 75 |
-
conda activate tensorflow_environment
|
| 76 |
-
### Activate the created environment
|
| 77 |
-
|
| 78 |
-
conda deactivate
|
| 79 |
-
### Deactivate the current environment (corrected from 'conda activate')
|
| 80 |
-
|
| 81 |
-
conda env list
|
| 82 |
-
### List all available Conda environments
|
| 83 |
-
|
| 84 |
-
conda install -c conda-forge cudatoolkit=11.2 cudnn=8.1.0
|
| 85 |
-
### Install CUDA Toolkit 11.2 and cuDNN 8.1.0 for GPU support
|
| 86 |
-
|
| 87 |
-
python -m pip install --upgrade pip
|
| 88 |
-
### Upgrade pip to the latest version
|
| 89 |
-
|
| 90 |
-
cd <folder_location>
|
| 91 |
-
### Change directory to the specified folder location
|
| 92 |
-
|
| 93 |
-
pip install -r requirements.txt
|
| 94 |
-
### Install all Python libraries listed in requirements.txt
|
| 95 |
-
|
| 96 |
-
## Note:
|
| 97 |
-
using pip install > CPU version gets installed
|
| 98 |
-
##
|
| 99 |
-
using requirements.txt > TF detects CUDA installation [for GPU] > installs GPU version
|
| 100 |
-
|
| 101 |
-
# Reference
|
| 102 |
-
- *youtube tutorial*: https://www.youtube.com/playlist?list=PLvz5lCwTgdXDNcXEVwwHsb9DwjNXZGsoy
|
| 103 |
-
|
| 104 |
-
|
| 105 |
-
# Model
|
| 106 |
-
|
| 107 |
-
## 1. Importing Libraries
|
| 108 |
-
|
| 109 |
-
### Python Libraries
|
| 110 |
-
import matplotlib.pyplot as plt
|
| 111 |
-
import seaborn as sns
|
| 112 |
-
import tensorflow as tf
|
| 113 |
-
|
| 114 |
-
### Keras Components
|
| 115 |
-
from tensorflow.keras.models import Sequential
|
| 116 |
-
from tensorflow.keras.layers import Dense, Conv2D, MaxPool2D, Flatten, Dropout
|
| 117 |
-
|
| 118 |
-
### Evaluation Metrics
|
| 119 |
-
from sklearn.metrics import classification_report, confusion_matrix
|
| 120 |
-
|
| 121 |
-
|
| 122 |
-
## 2. Data Preprocessing [Image Data Loading]
|
| 123 |
-
- Input dimensions: 256×256 RGB images
|
| 124 |
-
- Batch size: 32 samples
|
| 125 |
-
|
| 126 |
-
|
| 127 |
-
## 3. Import CNN Model & Layers
|
| 128 |
-
|
| 129 |
-
### Sequential Model
|
| 130 |
-
- A linear stack of layers which can be added one by one.
|
| 131 |
-
|
| 132 |
-
### Conv2D
|
| 133 |
-
- A 2D convolutional layer to detect leaf features (edges, spots, textures).
|
| 134 |
-
|
| 135 |
-
### MaxPool2D
|
| 136 |
-
- A pooling layer that reduces (halves) spatial dimensions from (126, 126, 32) to (63, 63, 32), further reducing computation.
|
| 137 |
-
|
| 138 |
-
### Flatten
|
| 139 |
-
- Converts multi-dimensional data from MaxPool2D (6×6×256) into a 1D vector (9216 values) so it can be fed into a Dense (fully connected) layer.
|
| 140 |
-
|
| 141 |
-
### Dense (Fully Connected)
|
| 142 |
-
- A regular fully-connected neural network layer.
|
| 143 |
-
|
| 144 |
-
|
| 145 |
-
## 4. CNN Architecture
|
| 146 |
-
|
| 147 |
-
#### Sequential Model
|
| 148 |
-
- Linear stack of layers added sequentially
|
| 149 |
-
- Simple feed-forward architecture
|
| 150 |
-
|
| 151 |
-
#### Conv2D (2D Convolutional Layer)
|
| 152 |
-
- **Purpose**: Detects visual features (edges, spots, textures)
|
| 153 |
-
- **Operation**: Applies learned filters across spatial dimensions
|
| 154 |
-
- **Example**: Input (126, 126, 32) → Output (126, 126, 64)
|
| 155 |
-
|
| 156 |
-
#### MaxPool2D (Max Pooling Layer)
|
| 157 |
-
- **Purpose**: Reduces spatial dimensions while preserving important features
|
| 158 |
-
- **Operation**: Takes maximum value from each window
|
| 159 |
-
- **Example**: Input (126, 126, 64) → Output (63, 63, 64) [with 2×2 pooling]
|
| 160 |
-
|
| 161 |
-
#### Flatten
|
| 162 |
-
- **Purpose**: Converts multi-dimensional data to 1D vector
|
| 163 |
-
- **Operation**: Reshapes (6, 6, 256) → (9216)
|
| 164 |
-
- **Why**: Prepares data for dense layers
|
| 165 |
-
|
| 166 |
-
#### Dense (Fully Connected Layer)
|
| 167 |
-
- **Purpose**: Final classification layer
|
| 168 |
-
- **Operation**: Each neuron connects to all inputs
|
| 169 |
-
- **Typical Use**: Last layer with softmax activation for classification
|
| 170 |
-
|
| 171 |
-
## CNN Architecture Used: 5 x [Pairs of Conv2D + MaxPooling] to balance detail preservation and computational cost
|
| 172 |
-
|
| 173 |
-
|
| 174 |
-
## 5. Build CNN Layers
|
| 175 |
-
|
| 176 |
-
- **feature map**: Resulting output
|
| 177 |
-
- **filters**: Number of patterns (features) to learn
|
| 178 |
-
- **kernel_size**: Size of the sliding window (window to scan the image)
|
| 179 |
-
- **padding=same** [preserve image size]: Size of input image matches the size of feature matrix for each Conv2D layer
|
| 180 |
-
- **padding=valid** [reduce flatten parameters to avoid overfitting]: Shrinks for each Conv2D layer
|
| 181 |
-
- **strides**: Stepwise movement speed of the sliding window (in pixels)
|
| 182 |
-
- **pool_size**: Window size (e.g., (2,2) halves dimensions)
|
| 183 |
-
- **dropout()**: Regularization step which randomly drops a percentage of neurons during each training step
|
| 184 |
-
- **relu**: If a leaf has a symptom - keeps the input. If no symptoms - ignores the input
|
| 185 |
-
- **relu units**: Number of neurons looking for different patterns (e.g., spot, color changes). More units give more detailed detection (but slower)
|
| 186 |
-
- **softmax**: Converts the detected features into probabilities for each class. Highest probability is the predicted class
|
| 187 |
-
- **softmax units**: Number of possible diseases (classes)
|
| 188 |
-
|
| 189 |
-
## Gradual Filter Increase with Each Conv2D [32 → 256 filters: simple → complex features]
|
| 190 |
-
|
| 191 |
-
|
| 192 |
-
## 6. Compiling Model
|
| 193 |
-
|
| 194 |
-
- **Adam(Adaptive Moment Estimation)**: optimization algorithm, adjusts learning rate adaptively to minimize prediction errors
|
| 195 |
-
- **learning_rate**: adjusts model weights (patterns)
|
| 196 |
-
- **categorical_crossentropy**: measures difference between model’s predictions and true labels
|
| 197 |
-
- **accuracy**: % of correctly classified leaves
|
| 198 |
-
|
| 199 |
-
|
| 200 |
-
## 7. Model Summary
|
| 201 |
-
|
| 202 |
-
- Each Conv2D reduces image size only slightly (e.g., 128×128 → 126×126)
|
| 203 |
-
- Dense(1024) outputs 1024 high-level features for the final classification layer
|
| 204 |
-
- Dense(38) outputs probabilities for 38 disease classes
|
| 205 |
-
|
| 206 |
-
## 8. Model Training
|
| 207 |
-
|
| 208 |
-
- **epoch**: number of times the model will be trained, adjust till loss/accuracy becomes still
|
| 209 |
-
|
| 210 |
-
### Challenges and Fixes
|
| 211 |
-
|
| 212 |
-
#### Overshooting
|
| 213 |
-
- **Description**: Model updates weights too aggressively (due to high learning rate), missing the optimal solution.
|
| 214 |
-
- **Signs of Overshooting**: Loss/accuracy fluctuates wildly during training.
|
| 215 |
-
- **Fix**: Use a smaller learning rate (changed from default 0.001 to 0.0001).
|
| 216 |
-
|
| 217 |
-
#### Overfitting
|
| 218 |
-
- **Description**: Model memorizes specific leaf images but fails on new images.
|
| 219 |
-
- **Signs of Overfitting**: High training accuracy, low validation accuracy.
|
| 220 |
-
- **Fix**:
|
| 221 |
-
- Add Dropout after dense layers.
|
| 222 |
-
- Reduce the number of neurons (model size).
|
| 223 |
-
|
| 224 |
-
### Changes Made To The Model
|
| 225 |
-
|
| 226 |
-
- Increased dense layer neurons from 1024 to 1500
|
| 227 |
-
- Decreased learning rate size from adam default 0.001 to 0.0001
|
| 228 |
-
- Added Dropouts after conv2d layers (25%) and dense layer (40%)
|
| 229 |
-
- Added another conv2d layer with 512 filters to capture tiny disease signs (e.g., tiny lesions, texture changes)
|
| 230 |
-
- Removed padding from second conv2d layer to boost training speed
|
| 231 |
-
|
| 232 |
-
### Before Changes
|
| 233 |
-
|
| 234 |
-
- **Total params**: 10,649,414
|
| 235 |
-
- **Trainable params**: 10,649,414
|
| 236 |
-
- **Non-trainable params**: 0
|
| 237 |
-
|
| 238 |
-
### After Changes
|
| 239 |
-
|
| 240 |
-
- **Total params**: 7,842,762
|
| 241 |
-
- **Trainable params**: 7,842,762
|
| 242 |
-
- **Non-trainable params**: 0
|
| 243 |
-
|
| 244 |
-
|
| 245 |
-
### Model Testing
|
| 246 |
-
|
| 247 |
-
- Access class names of the dataset
|
| 248 |
-
- Load the validation set for testing the model, then use it to predict classes
|
| 249 |
-
- **Output**: 38 probabilities for 17572 images present in validation folder
|
| 250 |
-
- Vertically calculate the maximum probability for each image
|
| 251 |
-
- Iterate over test set
|
| 252 |
-
|
| 253 |
-
### Confusion Matrix
|
| 254 |
-
- The confusion matrix is generated to evaluate the model's performance
|
| 255 |
-
|
| 256 |
-
# CSV Data Exporter
|
| 257 |
-
- Python script to export plant disease data to a CSV file
|
| 258 |
-
- It generates `plant_disease_data.csv` with these columns:
|
| 259 |
-
- Class Name
|
| 260 |
-
- Disease
|
| 261 |
-
- Symptoms
|
| 262 |
-
- Treatment
|
| 263 |
-
|
| 264 |
-
|
| 265 |
-
# Website Using Streamlit
|
| 266 |
-
|
| 267 |
-
## Plant Disease Scanner
|
| 268 |
-
- A Streamlit app that identifies plant diseases from leaf photos using a trained TensorFlow model.
|
| 269 |
-
- Camera & Upload: Snap a photo or upload leaf images (JPG/PNG)
|
| 270 |
-
- AI Detection: Predicts diseases with confidence scores
|
| 271 |
-
- Treatment Guide: Shows symptoms and solutions for detected diseases
|
| 272 |
-
|
| 273 |
-
## Required Files
|
| 274 |
-
model.keras - Trained TensorFlow model
|
| 275 |
-
combined_disease_data.csv - Disease database Class Name, Disease, Symptoms, Treatment columns
|
| 276 |
-
|
| 277 |
-
## How It Works
|
| 278 |
-
Data Loading: Reads CSV into dictionary
|
| 279 |
-
Prediction: Resizes images to 128x128, uses model.keras to predict disease class
|
| 280 |
-
|
| 281 |
-
## Results:
|
| 282 |
-
- Disease name with confidence %
|
| 283 |
-
- Expandable treatment guide
|
| 284 |
-
|
| 285 |
-
## Error Handling
|
| 286 |
-
- Catches invalid/corrupt images
|
| 287 |
-
- Handles missing disease data gracefully
|
| 288 |
-
- Works best with clear leaf photos against neutral backgrounds.
|
|
|
|
| 1 |
+
---
|
| 2 |
+
model_name: Plant Disease Scanner
|
| 3 |
+
model_type: Image Classification
|
| 4 |
+
license: cc-by-sa-4.0
|
| 5 |
+
description: >-
|
| 6 |
+
CNN model for classifying plant diseases from leaf images, detecting 38
|
| 7 |
+
classes.
|
| 8 |
+
intended_use:
|
| 9 |
+
- Identify plant diseases
|
| 10 |
+
- Provide treatment guides
|
| 11 |
+
training_data:
|
| 12 |
+
dataset_name: Plant Village Dataset
|
| 13 |
+
dataset_link: https://www.kaggle.com/datasets/vipoooool/new-plant-diseases-dataset
|
| 14 |
+
structure:
|
| 15 |
+
- 87k RGB images of 38 types of leaves
|
| 16 |
+
- 'Train: 70,295 images (80%)'
|
| 17 |
+
- 'Valid: 17,572 images (20%)'
|
| 18 |
+
evaluation_metrics:
|
| 19 |
+
- Accuracy
|
| 20 |
+
- Confusion Matrix
|
| 21 |
+
additional_info:
|
| 22 |
+
prerequisites:
|
| 23 |
+
- Python 3.9
|
| 24 |
+
- Anaconda3
|
| 25 |
+
- NVIDIA GPU
|
| 26 |
+
- TensorFlow 2.10
|
| 27 |
+
installation: Follow instructions in the repository.
|
| 28 |
+
model_architecture: 5 x [Conv2D + MaxPooling] with Dense layers.
|
| 29 |
+
error_handling: Handles invalid images and missing data.
|
| 30 |
+
language:
|
| 31 |
+
- en
|
| 32 |
+
metrics:
|
| 33 |
+
- accuracy
|
| 34 |
+
pipeline_tag: image-classification
|
| 35 |
+
tags:
|
| 36 |
+
- plant-disease
|
| 37 |
+
- cnn
|
| 38 |
+
- image-classification
|
| 39 |
+
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|