MSA-Code / src /prefill.py
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Anonymous code release: MSA inference and evaluation
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import sys
import os
from typing import List, Dict
from dataclasses import dataclass
import multiprocessing as mp
import pathlib
import torch
from transformers import AutoTokenizer, BitsAndBytesConfig
project_path = pathlib.Path(__file__).parent.parent
sys.path.append(str(project_path))
from src.utils.gpu_worker import GpuWorker
from src.utils.template import QWEN3_TEMPLATE, QWEN3_INSTRUCT_TEMPLATE
from src.utils.cache import copy_kv_cache_to_device, CustomDynamicCacheOnCPU
from src.msa.model import MSAForCausalLM
from src.utils.gpu_worker import GpuWorker
from src.utils.tools import compose_input
from src.types import Document, ProtocolConstants
@dataclass
class BlockModelInput:
doc_input_ids: torch.Tensor
doc_attention_mask: torch.Tensor
doc_ids: torch.Tensor
position_ids: torch.Tensor
num_chunks: int
chunk_sizes: List[int]
PREFILL_WORKER_READY = "PREFILL_WORKER_READY"
PREFILL_WORKER_CLOSE = "PREFILL_WORKER_CLOSE"
PREFILL_WORKER_MEMORY_DOCS = "PREFILL_WORKER_MEMORY_DOCS"
PREFILL_WORKER_NUM_CHUNKS_REPORT = "PREFILL_WORKER_NUM_CHUNKS_REPORT"
PREFILL_WORKER_META = "PREFILL_WORKER_META"
class PrefillStage1Worker(GpuWorker):
"""Memory工作进程"""
def __init__(self, gpu_id: int, model_path: str, template: dict,
pooling_kernel_size: int, envs: dict):
"""
该 worker 被MemoryWorker创建并仅执行prefill stage 1获取block 的kv cache
"""
super().__init__(gpu_id, envs)
self.model_path = model_path
self.pooling_kernel_size = pooling_kernel_size
self._load_model()
self.model_config = self.model.config
self.template_id = -2
self._prepare_template(template)
def num_model_layers(self):
return self.model_config.num_hidden_layers
def _load_model(self):
"""加载模型和tokenizer"""
# 加载tokenizer
self.tokenizer = AutoTokenizer.from_pretrained(self.model_path)
# 加载模型
self.model = MSAForCausalLM.from_pretrained(
self.model_path,
use_cache=True,
attn_implementation="flash_attention_2",
torch_dtype="bfloat16",
device_map=self.device,
)
self.model.eval()
@staticmethod
def split_docs(docs: List[Document], block_size: int):
sub_blocks = []
curr_block = []
sz = 0
for doc in docs:
chunks = doc.num_chunks
if sz + chunks > block_size and curr_block:
sub_blocks.append(curr_block)
sz = 0
curr_block = []
curr_block.append(doc)
sz += chunks
if curr_block:
sub_blocks.append(curr_block)
return sub_blocks
@staticmethod
def wait_for_ready(q: mp.Queue):
ProtocolConstants.expect(q, PREFILL_WORKER_READY)
@staticmethod
def close_worker(q: mp.Queue):
ProtocolConstants.send(q, PREFILL_WORKER_CLOSE, block=True)
@staticmethod
def send_documents(q: mp.Queue, docs):
ProtocolConstants.send(q,
PREFILL_WORKER_MEMORY_DOCS,
data=docs,
block=False)
@staticmethod
def recv_meta(q: mp.Queue):
return ProtocolConstants.expect(q, PREFILL_WORKER_META)
@staticmethod
def prefill_worker_main(gpu_id: int, request_queue: mp.Queue, response_queue: mp.Queue,
model_path: str, template: Dict,
pooling_kernel_size: int, block_size: int, envs):
# print(f"prefill worker {gpu_id} started")
worker = PrefillStage1Worker(gpu_id, model_path, template, pooling_kernel_size, envs)
# notify parent I'm ready
ProtocolConstants.send(response_queue, PREFILL_WORKER_READY, block=False)
docs: List[Document] = ProtocolConstants.expect(request_queue, PREFILL_WORKER_MEMORY_DOCS)
try:
for block in PrefillStage1Worker.split_docs(docs, block_size):
meta = worker.inference(block)
# send to master worker process and continue, DO NOT block
ProtocolConstants.send(response_queue,
PREFILL_WORKER_META,
data=meta,
block=False)
except Exception as e:
print(f"[子进程 {gpu_id}] 发生错误: {e}")
import traceback
traceback.print_exc()
# wait for exit signal
ProtocolConstants.expect(request_queue, PREFILL_WORKER_CLOSE)
print(f"prefill worker {gpu_id} ended")
def inference(self, block: List[Document]):
"""
处理memory block
Args:
memory_block: 分配给此GPU的memory block
"""
model_input = self._prepare_block_inputs(block)
kv_meta = self._inference(model_input)
kv_meta['nr_docs'] = len(block)
kv_meta['doc_ids'] = [item.doc_id for item in block]
kv_meta['nr_chunks'] = [item.num_chunks for item in block]
return kv_meta
def _prepare_template(self, template: Dict) -> Dict:
"""
重新加载单个memory block
完整复制eval_anything_v2_batch.py中reload_memory的逻辑
Args:
block: memory block数据 [(doc_id, doc_str), ...]
template: 模板字典
Returns:
KV cache元数据
"""
# 获取模板信息
self.pad_token = self.tokenizer.pad_token
self.pad_token_id = self.tokenizer.pad_token_id
self.doc_end_id = self.tokenizer("<|im_end|>", add_special_tokens=False)["input_ids"]
prompt_template = template["prompt"].replace("{prompt}", self.pad_token)
prompt_template_inputs = self.tokenizer(prompt_template, add_special_tokens=False)
self.prompt_template_input_ids = prompt_template_inputs["input_ids"]
self.prompt_template_attention_mask = prompt_template_inputs["attention_mask"]
self.pad_index = self.prompt_template_input_ids.index(self.pad_token_id)
self.template_head_input_ids = self.prompt_template_input_ids[:self.pad_index]
self.template_head_attention_mask = self.prompt_template_attention_mask[:self.pad_index]
self.template_tail_input_ids = self.prompt_template_input_ids[self.pad_index+1:]
self.template_tail_attention_mask = self.prompt_template_attention_mask[self.pad_index+1:]
def _prepare_block_inputs(self, block: List[Document]) -> Dict:
"""
重新加载单个memory block
完整复制eval_anything_v2_batch.py中reload_memory的逻辑
Args:
block: memory block数据 [(doc_id, doc_str), ...]
template: 模板字典
Returns:
KV cache元数据
"""
# 准备文档数据
# block starts with template head
doc_ids = [self.template_id] * len(self.template_head_input_ids)
doc_input_ids = [i for i in self.template_head_input_ids ]
doc_attention_mask = [i for i in self.template_head_attention_mask]
position_ids = [i for i in range(self.pad_index)]
chunk_sizes = [] # 记录每一份文档占用的 chunk 数量
for doc_idx, item in enumerate(block):
doc_id, doc, pre_calculated_num_chunk = item.doc_id, item.doc, item.num_chunks
new_doc, doc_inputs = compose_input(doc, doc_id, self.tokenizer)
# print(f"inference {doc_id+1}: {new_doc}")
# 此处必须使用 1 起始的doc_idx,因为此 id 是用于生成 pool doc ID 的
# 注意不可以使用doc_id,doc_id只能用于嵌入在语料中,使得 generate 时能生成出来,
# 而pool doc ID的作用却是用于标注产生的 kv cache chunks 和文档的对应关系
# 所以每次 stage1 的推理doc id 都是从 1 开始的
temp_doc_ids = [doc_idx+1] * len(doc_inputs["input_ids"])
temp_doc_input_ids = doc_inputs["input_ids"]
temp_doc_attention_mask = doc_inputs["attention_mask"]
length = len(temp_doc_input_ids)
temp_position_ids = [i for i in range(length)]
chunk_size = (len(temp_doc_ids) + self.pooling_kernel_size - 1) // self.pooling_kernel_size
chunk_sizes.append(chunk_size)
assert chunk_size == pre_calculated_num_chunk, f"pre calculated chunk {pre_calculated_num_chunk} got {chunk_size}, doc str {len(doc)} id len {length}/{len(temp_doc_ids)}: [{doc_id}] <{doc}>"
doc_ids.extend(temp_doc_ids)
doc_input_ids.extend(temp_doc_input_ids)
doc_attention_mask.extend(temp_doc_attention_mask)
position_ids.extend(temp_position_ids)
input_ids_tensor = torch.LongTensor([doc_input_ids])
attention_mask_tensor = torch.LongTensor([doc_attention_mask])
doc_ids_tensor = torch.LongTensor([doc_ids])
position_ids_tensor = torch.LongTensor([position_ids])
return BlockModelInput(doc_input_ids=input_ids_tensor,
doc_attention_mask=attention_mask_tensor,
doc_ids=doc_ids_tensor,
position_ids=position_ids_tensor,
num_chunks=sum(chunk_sizes),
chunk_sizes=chunk_sizes)
def _inference(self, model_input: BlockModelInput) -> Dict:
"""
重新加载单个memory block
完整复制eval_anything_v2_batch.py中reload_memory的逻辑
Args:
block: memory block数据 [(doc_id, doc_str), ...]
template: 模板字典
Returns:
KV cache元数据
"""
# 转换为tensor
input_ids_tensor = model_input.doc_input_ids.to(self.device)
attention_mask_tensor = model_input.doc_attention_mask.to(self.device)
doc_ids_tensor = model_input.doc_ids.to(self.device)
position_ids_tensor = model_input.position_ids.to(self.device)
# 创建past_key_values,这里我们会直接将 kvcache 和其他的 tensor 全部保存在 cpu 上
past_key_values = CustomDynamicCacheOnCPU()
for layer_idx in range(self.num_model_layers()):
past_key_values.record_kwargs(layer_idx, {"stage": "prefill_stage1"})
# 执行prefill
# TODO: 多 batch 会更快
with torch.no_grad():
if True:
"""我们的数据太大了,会导致model lm_head产生大量的显存堆积,所以直接用model.model避过去"""
outputs = self.model.model(
input_ids=input_ids_tensor,
attention_mask=attention_mask_tensor,
position_ids=position_ids_tensor,
past_key_values=past_key_values,
use_cache=True,
output_attentions=False,
output_hidden_states=False,
output_docs_score=False,
doc_ids=doc_ids_tensor,
)
else:
outputs = self.model(
input_ids=input_ids_tensor,
attention_mask=attention_mask_tensor,
doc_ids=doc_ids_tensor,
use_cache=True,
position_ids=position_ids_tensor,
past_key_values=past_key_values,
)
torch.cuda.empty_cache()
# 构建返回的元数据
kvcache_meta = {
"chunk_sizes": model_input.chunk_sizes,
"past_key_values": outputs.past_key_values,
}
return kvcache_meta