MSA-Code / src /utils /misc.py
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Anonymous code release: MSA inference and evaluation
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import os
import subprocess
import math
import torch
import torch.distributed as dist
import transformers
from typing import Union, Iterable, List, Dict, Tuple, Optional
class DictWithDotAccess(dict):
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
for arg in args:
if isinstance(arg, dict):
for key, value in arg.items():
if isinstance(value, dict):
value = DictWithDotAccess(value)
self[key] = value
if kwargs:
for key, value in kwargs.items():
if isinstance(value, dict):
value = DictWithDotAccess(value)
self[key] = value
def __getattr__(self, attr):
return self.get(attr)
def is_dist_avail_and_initialized():
if not dist.is_available():
return False
if not dist.is_initialized():
return False
return True
def get_rank():
if not is_dist_avail_and_initialized():
return 0
return dist.get_rank()
def get_local_rank():
if not is_dist_avail_and_initialized():
return 0
return int(os.environ["LOCAL_RANK"])
def Print(*args):
if get_rank() == 0:
print(*args)
def get_sha():
cwd = os.path.dirname(os.path.abspath(__file__))
def _run(command):
return subprocess.check_output(command, cwd=cwd).decode("ascii").strip()
sha = "N/A"
diff = "clean"
branch = "N/A"
try:
sha = _run(["git", "rev-parse", "HEAD"])
subprocess.check_output(["git", "diff"], cwd=cwd)
diff = _run(["git", "diff-index", "HEAD"])
diff = "has uncommited changes" if diff else "clean"
branch = _run(["git", "rev-parse", "--abbrev-ref", "HEAD"])
except Exception:
pass
message = f"sha: {sha}, status: {diff}, branch: {branch}"
return message
def patch_cosine_with_warmup_schedule(minimal_lr=0.0):
def _get_cosine_schedule_with_warmup_lr_lambda(
current_step: int, *, num_warmup_steps: int, num_training_steps: int, num_cycles: float
):
if current_step < num_warmup_steps:
return float(current_step) / float(max(1, num_warmup_steps))
progress = float(current_step - num_warmup_steps) / float(max(1, num_training_steps - num_warmup_steps))
return max(minimal_lr, 0.5 * (1.0 + math.cos(math.pi * float(num_cycles) * 2.0 * progress)))
transformers.optimization._get_cosine_schedule_with_warmup_lr_lambda = _get_cosine_schedule_with_warmup_lr_lambda
# patch torch clip grad norm so that we can skip nan grad norm
from torch import Tensor, inf
from torch.utils._foreach_utils import _group_tensors_by_device_and_dtype, _has_foreach_support
_tensor_or_tensors = Union[torch.Tensor, Iterable[torch.Tensor]]
def clip_grad_norm_(
parameters: _tensor_or_tensors, max_norm: float, norm_type: float = 2.0,
error_if_nonfinite: bool = False, foreach: Optional[bool] = None) -> torch.Tensor:
r"""Clips gradient norm of an iterable of parameters.
The norm is computed over all gradients together, as if they were
concatenated into a single vector. Gradients are modified in-place.
Args:
parameters (Iterable[Tensor] or Tensor): an iterable of Tensors or a
single Tensor that will have gradients normalized
max_norm (float): max norm of the gradients
norm_type (float): type of the used p-norm. Can be ``'inf'`` for
infinity norm.
error_if_nonfinite (bool): if True, an error is thrown if the total
norm of the gradients from :attr:`parameters` is ``nan``,
``inf``, or ``-inf``. Default: False (will switch to True in the future)
foreach (bool): use the faster foreach-based implementation.
If ``None``, use the foreach implementation for CUDA and CPU native tensors and silently
fall back to the slow implementation for other device types.
Default: ``None``
Returns:
Total norm of the parameter gradients (viewed as a single vector).
"""
if isinstance(parameters, torch.Tensor):
parameters = [parameters]
grads = [p.grad for p in parameters if p.grad is not None]
max_norm = float(max_norm)
norm_type = float(norm_type)
if len(grads) == 0:
return torch.tensor(0.)
if torch.isnan(max_norm) or torch.isinf(max_norm):
for grad in grads:
grad.zero_()
print('>>>Found nan or inf max_norm, set grads to zero')
return torch.tensor(0.)
first_device = grads[0].device
grouped_grads: Dict[Tuple[torch.device, torch.dtype], List[List[Tensor]]] \
= _group_tensors_by_device_and_dtype([[g.detach() for g in grads]]) # type: ignore[assignment]
if norm_type == inf:
norms = [g.detach().abs().max().to(first_device) for g in grads]
total_norm = norms[0] if len(norms) == 1 else torch.max(torch.stack(norms))
else:
norms = []
for ((device, _), [grads]) in grouped_grads.items():
if (foreach is None or foreach) and _has_foreach_support(grads, device=device):
norms.extend(torch._foreach_norm(grads, norm_type))
elif foreach:
raise RuntimeError(f'foreach=True was passed, but can\'t use the foreach API on {device.type} tensors')
else:
norms.extend([torch.norm(g, norm_type) for g in grads])
total_norm = torch.norm(torch.stack([norm.to(first_device) for norm in norms]), norm_type)
if torch.isnan(total_norm) or torch.isinf(total_norm):
for grad in grads:
grad.zero_()
print('>>>Found nan or inf total_norm, set grads to zero')
return torch.tensor(0.)
if error_if_nonfinite and torch.logical_or(total_norm.isnan(), total_norm.isinf()):
raise RuntimeError(
f'The total norm of order {norm_type} for gradients from '
'`parameters` is non-finite, so it cannot be clipped. To disable '
'this error and scale the gradients by the non-finite norm anyway, '
'set `error_if_nonfinite=False`')
clip_coef = max_norm / (total_norm + 1e-6)
# Note: multiplying by the clamped coef is redundant when the coef is clamped to 1, but doing so
# avoids a `if clip_coef < 1:` conditional which can require a CPU <=> device synchronization
# when the gradients do not reside in CPU memory.
clip_coef_clamped = torch.clamp(clip_coef, max=1.0)
for ((device, _), [grads]) in grouped_grads.items():
if (foreach is None or foreach) and _has_foreach_support(grads, device=device):
torch._foreach_mul_(grads, clip_coef_clamped.to(device)) # type: ignore[call-overload]
elif foreach:
raise RuntimeError(f'foreach=True was passed, but can\'t use the foreach API on {device.type} tensors')
else:
clip_coef_clamped_device = clip_coef_clamped.to(device)
for g in grads:
g.detach().mul_(clip_coef_clamped_device)
return total_norm
def patch_torch_clip_grad_norm():
torch.nn.utils.clip_grad_norm_ = clip_grad_norm_