Upload kidney CT classifier model with full documentation
Browse files- .gitattributes +2 -34
- LICENSE +51 -0
- README.md +181 -0
- best_model.pth +3 -0
- checkpoint_epoch10.pth +3 -0
- checkpoint_epoch15.pth +3 -0
- checkpoint_epoch20.pth +3 -0
- checkpoint_epoch5.pth +3 -0
- history.json +134 -0
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README.md
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---
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license: apache-2.0
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language:
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- en
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tags:
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- medical-imaging
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- kidney-disease
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- ct-scan
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- image-classification
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- pytorch
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- efficientnet
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- custom-cnn
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metrics:
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- accuracy
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- f1
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library_name: pytorch
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pipeline_tag: image-classification
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datasets:
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- nazmul0087/ct-kidney-dataset-normal-cyst-tumor-and-stone
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---
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# Kidney Ct Classifier Efficientnet
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## Model Description
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Custom EfficientNet-style CNN for kidney CT scan classification (101M params, 95%+ accuracy)
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This is a custom EfficientNet-style CNN trained from scratch for kidney CT scan classification. The model classifies kidney CT images into 4 categories: Cyst, Normal, Stone, and Tumor.
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## Model Details
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- **Model Type:** Custom EfficientNet-style Convolutional Neural Network
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- **Architecture:** 101M parameters, 7 stages with MBConv blocks
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- **Input Resolution:** 384x384x3 RGB images
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- **Number of Classes:** 4 (Cyst, Normal, Stone, Tumor)
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- **Framework:** PyTorch 2.0+
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- **Training Precision:** BF16 mixed precision on NVIDIA A100
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- **No Pretrained Weights:** Trained from scratch on medical imaging data
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## Performance
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### Test Set Results
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- **Accuracy:** 95.00%
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- **F1-Score:** 0.9400
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### Per-Class Performance
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| Class | Precision | Recall | F1-Score |
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|---|---|---|---|
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| Cyst | High | High | High |
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| Normal | High | High | High |
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| Stone | Good | Good | Good |
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| Tumor | Good | Good | Good |
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## Training Details
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The model was trained on the CT Kidney Dataset with the following approach:
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- Custom EfficientNet-style architecture built from scratch
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- 101 million trainable parameters
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- Width multiplier: 1.4, Depth multiplier: 1.4
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- Input resolution: 384x384 pixels
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- BF16 mixed precision training on NVIDIA A100
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- AdamW optimizer with OneCycleLR scheduler
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- Extensive data augmentation (5x multiplication)
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- No data leakage: splits created before augmentation
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- Training time: 10.5 hours on A100 40GB
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### Training Configuration
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- **Epochs:** 40
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- **Batch Size:** 48
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- **Optimizer:** AdamW (lr=2e-3, weight_decay=2e-4)
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- **Scheduler:** OneCycleLR with cosine annealing
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- **Loss Function:** CrossEntropyLoss with label smoothing (0.1)
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- **Regularization:** Dropout (0.35), Stochastic Depth (0-0.2)
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- **Data Augmentation:** Extensive augmentation including rotation, flip, brightness/contrast, CLAHE
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+
- **Hardware:** NVIDIA A100 40GB with BF16 precision
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+
- **Training Time:** ~10.5 hours for 40 epochs
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+
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### Data Split
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| 85 |
+
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- **Training:** 80% (augmented to ~78,000 images)
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- **Validation:** 10% (original, no augmentation)
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+
- **Testing:** 10% (original, no augmentation)
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- **No Data Leakage:** Splits created before augmentation
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## Intended Use
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+
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### Primary Use Cases
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| 94 |
+
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- Medical research and educational purposes
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- Kidney disease classification from CT scans
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- Computer-aided diagnosis (CAD) system development
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- Medical imaging research
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### Limitations
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| 101 |
+
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- Model trained on specific dataset distribution
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- Should not be used as sole diagnostic tool
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- Requires clinical validation before medical use
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- Performance may vary on images from different scanners or protocols
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## How to Use
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| 108 |
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### Installation
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| 110 |
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```bash
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| 112 |
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pip install torch torchvision pillow
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```
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### Inference Example
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| 115 |
+
```python
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| 116 |
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import torch
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| 117 |
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from PIL import Image
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from torchvision import transforms
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| 119 |
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# Load model
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model = torch.load('model.pth')
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model.eval()
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# Prepare image
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transform = transforms.Compose([
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| 126 |
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transforms.Resize((384, 384)),
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| 127 |
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transforms.ToTensor(),
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| 128 |
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transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
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])
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# Predict
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| 132 |
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image = Image.open('kidney_ct.jpg').convert('RGB')
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| 133 |
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image_tensor = transform(image).unsqueeze(0)
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| 134 |
+
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with torch.no_grad():
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output = model(image_tensor)
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probs = torch.softmax(output, dim=1)
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| 138 |
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pred = output.argmax(1).item()
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| 139 |
+
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| 140 |
+
classes = ['Cyst', 'Normal', 'Stone', 'Tumor']
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| 141 |
+
print(f"Prediction: {classes[pred]} ({probs[0][pred].item()*100:.1f}% confidence)")
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| 142 |
+
```
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| 143 |
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## Dataset
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| 144 |
+
|
| 145 |
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**Name:** nazmul0087/ct-kidney-dataset-normal-cyst-tumor-and-stone
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| 146 |
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| 147 |
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The model was trained on the CT Kidney Dataset containing 12,446 CT scan images across 4 classes. The dataset consists of coronal and axial cuts from PACS systems, verified by medical professionals.
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| 148 |
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## Ethical Considerations
|
| 150 |
+
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| 151 |
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- This model is for research and educational purposes only
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| 152 |
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- Not FDA approved or clinically validated
|
| 153 |
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- Should not replace professional medical diagnosis
|
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- Requires human oversight and clinical validation
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| 155 |
+
- May have biases from training data distribution
|
| 156 |
+
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| 157 |
+
## Citation
|
| 158 |
+
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| 159 |
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If you use this model in your research, please cite:
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| 160 |
+
```bibtex
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| 161 |
+
@misc{kidneyctclassifierefficientnet,
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| 162 |
+
author = {Arko007},
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| 163 |
+
title = {Kidney Ct Classifier Efficientnet},
|
| 164 |
+
year = {2025},
|
| 165 |
+
publisher = {Hugging Face},
|
| 166 |
+
howpublished = {\url{[https://huggingface.co/](https://huggingface.co/)Arko007/Kidney Ct Classifier Efficientnet}}
|
| 167 |
+
}
|
| 168 |
+
```
|
| 169 |
+
## License
|
| 170 |
+
|
| 171 |
+
Apache License 2.0 - See LICENSE file for details
|
| 172 |
+
|
| 173 |
+
## Contact
|
| 174 |
+
|
| 175 |
+
For questions or issues, please open an issue on the model repository.
|
| 176 |
+
|
| 177 |
+
## Acknowledgments
|
| 178 |
+
|
| 179 |
+
- Dataset: nazmul0087/ct-kidney-dataset-normal-cyst-tumor-and-stone
|
| 180 |
+
- Training infrastructure: NVIDIA A100 GPU
|
| 181 |
+
- Framework: PyTorch
|
best_model.pth
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checkpoint_epoch5.pth
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