diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000000000000000000000000000000000000..f6b1f326ca4ab7cf0c8798856f8fe0020ff82d58 --- /dev/null +++ b/.gitattributes @@ -0,0 +1,36 @@ +*.7z filter=lfs diff=lfs merge=lfs -text +*.arrow filter=lfs diff=lfs merge=lfs -text +*.bin filter=lfs diff=lfs merge=lfs -text +*.bz2 filter=lfs diff=lfs merge=lfs -text +*.ckpt filter=lfs diff=lfs merge=lfs -text +*.ftz filter=lfs diff=lfs merge=lfs -text +*.gz filter=lfs diff=lfs merge=lfs -text +*.h5 filter=lfs diff=lfs merge=lfs -text +*.joblib filter=lfs diff=lfs merge=lfs -text +*.lfs.* filter=lfs diff=lfs merge=lfs -text +*.mlmodel filter=lfs diff=lfs merge=lfs -text +*.model filter=lfs diff=lfs merge=lfs -text +*.msgpack filter=lfs diff=lfs merge=lfs -text +*.npy filter=lfs diff=lfs merge=lfs -text +*.npz filter=lfs diff=lfs merge=lfs -text +*.onnx filter=lfs diff=lfs merge=lfs -text +*.ot filter=lfs diff=lfs merge=lfs -text +*.parquet filter=lfs diff=lfs merge=lfs -text +*.pb filter=lfs diff=lfs merge=lfs -text +*.pickle filter=lfs diff=lfs merge=lfs -text +*.pkl filter=lfs diff=lfs merge=lfs -text +*.pt filter=lfs diff=lfs merge=lfs -text +*.pth filter=lfs diff=lfs merge=lfs -text +*.rar filter=lfs diff=lfs merge=lfs -text +*.safetensors filter=lfs diff=lfs merge=lfs -text +saved_model/**/* filter=lfs diff=lfs merge=lfs -text +*.tar.* filter=lfs diff=lfs merge=lfs -text +*.tar filter=lfs diff=lfs merge=lfs -text +*.tflite filter=lfs diff=lfs merge=lfs -text +*.tgz filter=lfs diff=lfs merge=lfs -text +*.wasm filter=lfs diff=lfs merge=lfs -text +*.xz filter=lfs diff=lfs merge=lfs -text +*.zip filter=lfs diff=lfs merge=lfs -text +*.zst filter=lfs diff=lfs merge=lfs -text +*tfevents* filter=lfs diff=lfs merge=lfs -text +*.png filter=lfs diff=lfs merge=lfs -text diff --git a/README.md b/README.md new file mode 100644 index 0000000000000000000000000000000000000000..7ed24f23f9947d60b75e91ecbebaa5539560271c --- /dev/null +++ b/README.md @@ -0,0 +1,155 @@ +--- +license: cc-by-nc-sa-4.0 +library_name: moozy +pipeline_tag: feature-extraction +base_model: 1aurent/vit_small_patch8_224.lunit_dino +tags: + - pathology + - computational-pathology + - digital-pathology + - foundation-model + - whole-slide-image + - vision-transformer + - self-supervised-learning + - slide-encoder + - case-encoder + - histopathology + - medical-imaging + - multiple-instance-learning + - slide-level-representation + - patient-level-representation + - multi-task-learning + - survival-analysis + - cancer + - oncology + - tissue-classification + - mutation-prediction + - TCGA + - CPTAC + - pytorch + - transformer +datasets: + - MahmoodLab/Patho-Bench +language: + - en +--- + +# MOOZY: A Patient-First Foundation Model for Computational Pathology + +

+ Project Page + arXiv + GitHub + + PyPI + License + Python 3.10+ +

+ +MOOZY is a slide and patient-level foundation model for computational pathology. The patient case, not the individual slide, is the core unit of representation. A vision-only slide encoder pretrained with masked self-distillation on 77,134 public slides is aligned with clinical semantics through multi-task supervision over 333 tasks (205 classification, 128 survival) from 56 public datasets spanning 23 anatomical sites. A case transformer explicitly models dependencies across all slides from the same patient, replacing the naive early/late fusion used by prior methods. 85.77M total parameters. Trained entirely on public data. + +![MOOZY data scale](assets/data_scale_overview.png) + +## Table of Contents + +- [Installation](#installation) +- [Usage](#usage) + - [From pre-computed H5 feature files](#from-pre-computed-h5-feature-files) + - [From raw whole-slide images](#from-raw-whole-slide-images) + - [Python API](#python-api) + - [Arguments](#arguments) + - [Output format](#output-format) +- [Architecture](#architecture) +- [Tasks](#tasks) +- [Citation](#citation) +- [License](#license) + +## Installation + +```bash +pip install moozy +``` + +The checkpoint and task definitions are downloaded automatically from this repository on first use. + +## Usage + +### From pre-computed H5 feature files + +The faster path. Pass `.h5` files containing patch features extracted with `lunit_vit_small_patch8_dino` at 224x224 patch size. Compatible with [AtlasPatch](https://github.com/AtlasAnalyticsLab/AtlasPatch) and [TRIDENT](https://github.com/mahmoodlab/TRIDENT) outputs. + +```bash +moozy encode slide_1.h5 slide_2.h5 --output case_embedding.h5 +``` + +### From raw whole-slide images + +Pass slide files directly (`.svs`, `.tiff`, `.ndpi`, `.mrxs`, etc.). MOOZY calls [AtlasPatch](https://github.com/AtlasAnalyticsLab/AtlasPatch) under the hood to segment tissue, extract patches, and compute features. Requires `atlas-patch`, `sam2`, and the OpenSlide system library (see the [AtlasPatch installation guide](https://github.com/AtlasAnalyticsLab/AtlasPatch#installation)). + +```bash +moozy encode slide_1.svs slide_2.svs --output case_embedding.h5 --target_mag 20 +``` + +### Python API + +```python +from moozy.encoding import run_encoding + +# From H5 feature files +run_encoding( + slide_paths=["slide_1.h5", "slide_2.h5"], + output_path="case_embedding.h5", +) + +# From raw slides +run_encoding( + slide_paths=["slide_1.svs", "slide_2.svs"], + output_path="case_embedding.h5", + target_mag=20, +) +``` + +### Arguments + +| Argument | Default | Description | +|----------|---------|-------------| +| `SLIDES` | (required) | One or more H5 feature files or raw slide files forming a single case. Cannot mix the two types. | +| `--output`, `-o` | (required) | Output H5 file path. | +| `--mixed_precision` | off | Enable bfloat16 mixed precision. | +| `--target_mag` | 20 | Magnification for patch extraction from raw slides. Ignored for H5. | +| `--step_size` | 224 | Stride between patch centers in pixels. Set < 224 for overlap. Ignored for H5. | +| `--mpp_csv` | - | CSV with `wsi,mpp` columns for microns-per-pixel overrides. Ignored for H5. | + +### Output format + +The output H5 file contains a `features` dataset (768-D float32 case embedding) and a `coords` dataset with slide metadata. + +## Architecture + +| Component | Architecture | Params | Output dim | +|-----------|-------------|--------|------------| +| Patch encoder | ViT-S/8 (Lunit DINO) | 21.67M | 384 | +| Slide encoder | ViT, 6 layers, 768-D, 12 heads, 2D ALiBi | 42.8M | 768 | +| Case transformer | 3 layers, 12 heads | 21.3M | 768 | + +## Tasks + +This repository includes 333 task definitions in the `tasks/` directory. Each task has a `config.yaml` (task type, organ, label mapping) and a `task.csv` (annotations and splits). The tasks cover 205 classification and 128 survival endpoints across all 32 TCGA cohorts, all 10 CPTAC cohorts, REG, BC-Therapy, BRACS, CAMELYON17, DHMC Kidney, DHMC LUAD, EBRAINS, IMP Colorectum, IMP Cervix, MBC, MUT-HET-RCC, NADT Prostate, NAT-BRCA, and PANDA. + +## Citation + +```bibtex +@misc{kotp2026moozypatientfirstfoundationmodel, + title={MOOZY: A Patient-First Foundation Model for Computational Pathology}, + author={Yousef Kotp and Vincent Quoc-Huy Trinh and Christopher Pal and Mahdi S. Hosseini}, + year={2026}, + eprint={2603.27048}, + archivePrefix={arXiv}, + primaryClass={cs.CV}, + url={https://arxiv.org/abs/2603.27048}, +} +``` + +## License + +[CC BY-NC-SA 4.0](https://creativecommons.org/licenses/by-nc-sa/4.0/). 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b/tasks/REG_dataset/bladder_invasiveness/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..14a2b20a9dd6a58f0760c022ab273f38c37cf1bd --- /dev/null +++ b/tasks/REG_dataset/bladder_invasiveness/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: bladder +sample_col: filename +label_dict: + 0: Carcinoma in situ + 1: Invasive + 2: Non-invasive papillary diff --git a/tasks/REG_dataset/bladder_invasiveness/task.csv b/tasks/REG_dataset/bladder_invasiveness/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..bc28122825cd25914b41c54dd1ee3fb4202f9f8a --- /dev/null +++ b/tasks/REG_dataset/bladder_invasiveness/task.csv @@ -0,0 +1,809 @@ +case_id,filename,label +PIT_01_09947_01,PIT_01_09947_01.tiff,1 +PIT_01_09948_01,PIT_01_09948_01.tiff,1 +PIT_01_09948_02,PIT_01_09948_02.tiff,1 +PIT_01_09950_01,PIT_01_09950_01.tiff,1 +PIT_01_09951_01,PIT_01_09951_01.tiff,1 +PIT_01_09952_01,PIT_01_09952_01.tiff,1 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micropapillary carcinoma + 6: Mucinous carcinoma + 7: Papillary neoplasm + 8: Phyllodes tumor diff --git a/tasks/REG_dataset/breast_histologic_type/task.csv b/tasks/REG_dataset/breast_histologic_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6a2db7cf02df28f9b3ff1746f95a4c7a8e124072 --- /dev/null +++ b/tasks/REG_dataset/breast_histologic_type/task.csv @@ -0,0 +1,1613 @@ +case_id,filename,label +PIT_01_00002_01,PIT_01_00002_01.tiff,3 +PIT_01_00003_01,PIT_01_00003_01.tiff,3 +PIT_01_00004_01,PIT_01_00004_01.tiff,3 +PIT_01_00006_01,PIT_01_00006_01.tiff,3 +PIT_01_00007_01,PIT_01_00007_01.tiff,3 +PIT_01_00008_01,PIT_01_00008_01.tiff,3 +PIT_01_00019_01,PIT_01_00019_01.tiff,3 +PIT_01_00020_01,PIT_01_00020_01.tiff,3 +PIT_01_00025_01,PIT_01_00025_01.tiff,3 +PIT_01_00026_01,PIT_01_00026_01.tiff,3 +PIT_01_00027_01,PIT_01_00027_01.tiff,3 +PIT_01_00028_01,PIT_01_00028_01.tiff,3 +PIT_01_00029_01,PIT_01_00029_01.tiff,3 +PIT_01_00030_01,PIT_01_00030_01.tiff,3 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b/tasks/REG_dataset/breast_mitotic_score/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..91636ef22f3f5798d7223f59b35d77f6fb5b8209 --- /dev/null +++ b/tasks/REG_dataset/breast_mitotic_score/config.yaml @@ -0,0 +1,9 @@ +task_type: classification +organ: breast +sample_col: filename +label_dict: + 0: 1 + 1: 2 + 2: 3 +metrics: +- weighted_kappa diff --git a/tasks/REG_dataset/breast_mitotic_score/task.csv b/tasks/REG_dataset/breast_mitotic_score/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..1f1c9e4dcf870e0cb2ed23fd784cec0a45628b1f --- /dev/null +++ b/tasks/REG_dataset/breast_mitotic_score/task.csv @@ -0,0 +1,916 @@ +case_id,filename,label +PIT_01_00002_01,PIT_01_00002_01.tiff,0 +PIT_01_00003_01,PIT_01_00003_01.tiff,0 +PIT_01_00004_01,PIT_01_00004_01.tiff,0 +PIT_01_00006_01,PIT_01_00006_01.tiff,0 +PIT_01_00007_01,PIT_01_00007_01.tiff,0 +PIT_01_00008_01,PIT_01_00008_01.tiff,0 +PIT_01_00019_01,PIT_01_00019_01.tiff,0 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b/tasks/REG_dataset/breast_procedure_type/config.yaml @@ -0,0 +1,8 @@ +task_type: classification +organ: breast +sample_col: filename +label_dict: + 0: Biopsy NOS + 1: Core-needle biopsy + 2: Mammotome biopsy + 3: Sono-guided core biopsy diff --git a/tasks/REG_dataset/breast_procedure_type/task.csv b/tasks/REG_dataset/breast_procedure_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d428b815699d91970283f1e84eb7fd61d68f220c --- /dev/null +++ b/tasks/REG_dataset/breast_procedure_type/task.csv @@ -0,0 +1,1919 @@ +case_id,filename,label +PIT_01_00002_01,PIT_01_00002_01.tiff,1 +PIT_01_00003_01,PIT_01_00003_01.tiff,1 +PIT_01_00004_01,PIT_01_00004_01.tiff,1 +PIT_01_00006_01,PIT_01_00006_01.tiff,3 +PIT_01_00007_01,PIT_01_00007_01.tiff,3 +PIT_01_00008_01,PIT_01_00008_01.tiff,1 +PIT_01_00019_01,PIT_01_00019_01.tiff,1 +PIT_01_00020_01,PIT_01_00020_01.tiff,1 +PIT_01_00025_01,PIT_01_00025_01.tiff,3 +PIT_01_00026_01,PIT_01_00026_01.tiff,3 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b/tasks/REG_dataset/cervix_cin_grade/config.yaml @@ -0,0 +1,9 @@ +task_type: classification +organ: cervix +sample_col: filename +label_dict: + 0: CIN 1 + 1: CIN 2 + 2: CIN 3 +metrics: +- weighted_kappa diff --git a/tasks/REG_dataset/cervix_cin_grade/task.csv b/tasks/REG_dataset/cervix_cin_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b20748d230a4d7deb170e9bcb729df1d8bc63a4d --- /dev/null +++ b/tasks/REG_dataset/cervix_cin_grade/task.csv @@ -0,0 +1,498 @@ +case_id,filename,label +PIT_01_02955_01,PIT_01_02955_01.tiff,0 +PIT_01_02957_01,PIT_01_02957_01.tiff,0 +PIT_01_02958_01,PIT_01_02958_01.tiff,0 +PIT_01_02961_01,PIT_01_02961_01.tiff,0 +PIT_01_02962_01,PIT_01_02962_01.tiff,0 +PIT_01_02963_01,PIT_01_02963_01.tiff,0 +PIT_01_02964_01,PIT_01_02964_01.tiff,0 +PIT_01_02973_01,PIT_01_02973_01.tiff,0 +PIT_01_02979_01,PIT_01_02979_01.tiff,0 +PIT_01_02983_01,PIT_01_02983_01.tiff,0 +PIT_01_02986_01,PIT_01_02986_01.tiff,0 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b/tasks/REG_dataset/cervix_invasive_vs_preinvasive/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..328572bb96d21b24465ec6ffceb0f064481ebf7c --- /dev/null +++ b/tasks/REG_dataset/cervix_invasive_vs_preinvasive/task.csv @@ -0,0 +1,581 @@ +case_id,filename,label +PIT_01_02955_01,PIT_01_02955_01.tiff,1 +PIT_01_02957_01,PIT_01_02957_01.tiff,1 +PIT_01_02958_01,PIT_01_02958_01.tiff,1 +PIT_01_02961_01,PIT_01_02961_01.tiff,1 +PIT_01_02962_01,PIT_01_02962_01.tiff,1 +PIT_01_02963_01,PIT_01_02963_01.tiff,1 +PIT_01_02964_01,PIT_01_02964_01.tiff,1 +PIT_01_02973_01,PIT_01_02973_01.tiff,1 +PIT_01_02979_01,PIT_01_02979_01.tiff,1 +PIT_01_02983_01,PIT_01_02983_01.tiff,1 +PIT_01_02986_01,PIT_01_02986_01.tiff,1 +PIT_01_02987_01,PIT_01_02987_01.tiff,1 +PIT_01_02989_01,PIT_01_02989_01.tiff,1 +PIT_01_02992_01,PIT_01_02992_01.tiff,1 +PIT_01_02995_01,PIT_01_02995_01.tiff,1 +PIT_01_02997_01,PIT_01_02997_01.tiff,1 +PIT_01_02999_01,PIT_01_02999_01.tiff,1 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a/tasks/REG_dataset/cervix_procedure_type/task.csv b/tasks/REG_dataset/cervix_procedure_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b9cbf0da369d995ff3d410517bf0e3f94af629bb --- /dev/null +++ b/tasks/REG_dataset/cervix_procedure_type/task.csv @@ -0,0 +1,616 @@ +case_id,filename,label +PIT_01_02955_01,PIT_01_02955_01.tiff,0 +PIT_01_02957_01,PIT_01_02957_01.tiff,0 +PIT_01_02958_01,PIT_01_02958_01.tiff,0 +PIT_01_02961_01,PIT_01_02961_01.tiff,0 +PIT_01_02962_01,PIT_01_02962_01.tiff,0 +PIT_01_02963_01,PIT_01_02963_01.tiff,0 +PIT_01_02964_01,PIT_01_02964_01.tiff,0 +PIT_01_02973_01,PIT_01_02973_01.tiff,1 +PIT_01_02979_01,PIT_01_02979_01.tiff,1 +PIT_01_02983_01,PIT_01_02983_01.tiff,0 +PIT_01_02986_01,PIT_01_02986_01.tiff,0 +PIT_01_02987_01,PIT_01_02987_01.tiff,0 +PIT_01_02989_01,PIT_01_02989_01.tiff,0 +PIT_01_02992_01,PIT_01_02992_01.tiff,0 +PIT_01_02995_01,PIT_01_02995_01.tiff,0 +PIT_01_02997_01,PIT_01_02997_01.tiff,0 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a/tasks/REG_dataset/cervix_sil_grade/config.yaml b/tasks/REG_dataset/cervix_sil_grade/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..a3fc6e51c1b21d1411bcb67414062d754418e53b --- /dev/null +++ b/tasks/REG_dataset/cervix_sil_grade/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: cervix +sample_col: filename +label_dict: + 0: HSIL + 1: LSIL diff --git a/tasks/REG_dataset/cervix_sil_grade/task.csv b/tasks/REG_dataset/cervix_sil_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..33e2fd6c97d1abe6b7768f6416b26c24110fbe3e --- /dev/null +++ b/tasks/REG_dataset/cervix_sil_grade/task.csv @@ -0,0 +1,498 @@ +case_id,filename,label +PIT_01_02955_01,PIT_01_02955_01.tiff,1 +PIT_01_02957_01,PIT_01_02957_01.tiff,1 +PIT_01_02958_01,PIT_01_02958_01.tiff,1 +PIT_01_02961_01,PIT_01_02961_01.tiff,1 +PIT_01_02962_01,PIT_01_02962_01.tiff,1 +PIT_01_02963_01,PIT_01_02963_01.tiff,1 +PIT_01_02964_01,PIT_01_02964_01.tiff,1 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0000000000000000000000000000000000000000..ba8e2f2f5774baebb919f15ee1abcd3bfa16455e --- /dev/null +++ b/tasks/REG_dataset/colon_histologic_type/config.yaml @@ -0,0 +1,14 @@ +task_type: classification +organ: colon +sample_col: filename +label_dict: + 0: Adenocarcinoma + 1: Chronic active colitis + 2: Chronic inflammation + 3: Hyperplastic polyp + 4: Malignant lymphoma + 5: Mucinous carcinoma + 6: Neuroendocrine tumor + 7: Sessile serrated lesion + 8: Tubular adenoma + 9: Tubulovillous adenoma diff --git a/tasks/REG_dataset/colon_histologic_type/task.csv b/tasks/REG_dataset/colon_histologic_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..cbc0cd5f20a0faaa8a571fedc670cdba6bbbc076 --- /dev/null +++ b/tasks/REG_dataset/colon_histologic_type/task.csv @@ -0,0 +1,916 @@ +case_id,filename,label +PIT_01_03737_01,PIT_01_03737_01.tiff,0 +PIT_01_03749_01,PIT_01_03749_01.tiff,0 +PIT_01_03752_01,PIT_01_03752_01.tiff,0 +PIT_01_03755_01,PIT_01_03755_01.tiff,0 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b/tasks/REG_dataset/colon_malignant_vs_benign/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..38092c2987304e1528cec87851032f5692d8d4ba --- /dev/null +++ b/tasks/REG_dataset/colon_malignant_vs_benign/task.csv @@ -0,0 +1,918 @@ +case_id,filename,label +PIT_01_03737_01,PIT_01_03737_01.tiff,1 +PIT_01_03749_01,PIT_01_03749_01.tiff,1 +PIT_01_03752_01,PIT_01_03752_01.tiff,1 +PIT_01_03755_01,PIT_01_03755_01.tiff,1 +PIT_01_03756_01,PIT_01_03756_01.tiff,1 +PIT_01_03758_01,PIT_01_03758_01.tiff,1 +PIT_01_03760_01,PIT_01_03760_01.tiff,1 +PIT_01_03762_01,PIT_01_03762_01.tiff,1 +PIT_01_03766_01,PIT_01_03766_01.tiff,1 +PIT_01_03767_01,PIT_01_03767_01.tiff,1 +PIT_01_03768_01,PIT_01_03768_01.tiff,1 +PIT_01_03771_01,PIT_01_03771_01.tiff,1 +PIT_01_03772_01,PIT_01_03772_01.tiff,1 +PIT_01_03773_01,PIT_01_03773_01.tiff,1 +PIT_01_03774_01,PIT_01_03774_01.tiff,1 +PIT_01_03776_01,PIT_01_03776_01.tiff,1 +PIT_01_03778_01,PIT_01_03778_01.tiff,1 +PIT_01_03779_01,PIT_01_03779_01.tiff,1 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a/tasks/REG_dataset/lung_histologic_type/config.yaml b/tasks/REG_dataset/lung_histologic_type/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c4e1c9382190c907f118994cfbfef4f4ab2672d1 --- /dev/null +++ b/tasks/REG_dataset/lung_histologic_type/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: lung +sample_col: filename +label_dict: + 0: Adenocarcinoma + 1: Small cell carcinoma + 2: Squamous cell carcinoma diff --git a/tasks/REG_dataset/lung_histologic_type/task.csv b/tasks/REG_dataset/lung_histologic_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..c5d8baff3185bb0311677e290260c00bb536677d --- /dev/null +++ b/tasks/REG_dataset/lung_histologic_type/task.csv @@ -0,0 +1,754 @@ +case_id,filename,label +PIT_01_04792_01,PIT_01_04792_01.tiff,0 +PIT_01_04793_01,PIT_01_04793_01.tiff,0 +PIT_01_04794_01,PIT_01_04794_01.tiff,1 +PIT_01_04796_01,PIT_01_04796_01.tiff,1 +PIT_01_04797_01,PIT_01_04797_01.tiff,1 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b/tasks/REG_dataset/lung_malignant_vs_benign/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..2d89fae23db7e11b6ddb0d3ef9909aefc96b343f --- /dev/null +++ b/tasks/REG_dataset/lung_malignant_vs_benign/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: lung +sample_col: filename +label_dict: + 0: Benign + 1: Malignant diff --git a/tasks/REG_dataset/lung_malignant_vs_benign/task.csv b/tasks/REG_dataset/lung_malignant_vs_benign/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..090da684a2818b6481b91860166b88b176611b80 --- /dev/null +++ b/tasks/REG_dataset/lung_malignant_vs_benign/task.csv @@ -0,0 +1,889 @@ +case_id,filename,label +PIT_01_04792_01,PIT_01_04792_01.tiff,1 +PIT_01_04793_01,PIT_01_04793_01.tiff,1 +PIT_01_04794_01,PIT_01_04794_01.tiff,1 +PIT_01_04796_01,PIT_01_04796_01.tiff,1 +PIT_01_04797_01,PIT_01_04797_01.tiff,1 +PIT_01_04799_01,PIT_01_04799_01.tiff,1 +PIT_01_04800_01,PIT_01_04800_01.tiff,1 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b/tasks/REG_dataset/multi_organ_procedure_classification/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..ff2f05d283ebf337ef70371ed4cec3c66aa44a79 --- /dev/null +++ b/tasks/REG_dataset/multi_organ_procedure_classification/config.yaml @@ -0,0 +1,13 @@ +task_type: classification +organ: multi +sample_col: filename +label_dict: + 0: Biopsy NOS + 1: Colonoscopic biopsy + 2: Colposcopic biopsy + 3: Core biopsy + 4: Endoscopic biopsy + 5: Mammotome biopsy + 6: Punch biopsy + 7: Sono-guided biopsy + 8: Transurethral resection diff --git a/tasks/REG_dataset/multi_organ_procedure_classification/task.csv b/tasks/REG_dataset/multi_organ_procedure_classification/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6e61d1b46564244871be59e6b4e1f148e84b8fbc --- /dev/null +++ b/tasks/REG_dataset/multi_organ_procedure_classification/task.csv @@ -0,0 +1,8490 @@ +case_id,filename,label +PIT_01_00002_01,PIT_01_00002_01.tiff,3 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diff --git a/tasks/REG_dataset/prostate_grade_group/config.yaml b/tasks/REG_dataset/prostate_grade_group/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..21c2e356bf3945085765dbec2ade5d89785b446c --- /dev/null +++ b/tasks/REG_dataset/prostate_grade_group/config.yaml @@ -0,0 +1,11 @@ +task_type: classification +organ: prostate +sample_col: filename +label_dict: + 0: '1' + 1: '2' + 2: '3' + 3: '4' + 4: '5' +metrics: +- weighted_kappa diff --git a/tasks/REG_dataset/prostate_grade_group/task.csv b/tasks/REG_dataset/prostate_grade_group/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..40c83ee6a38c6369ba78cd423df6504f46b662c3 --- /dev/null +++ b/tasks/REG_dataset/prostate_grade_group/task.csv @@ -0,0 +1,1367 @@ +case_id,filename,label +PIT_01_05664_01,PIT_01_05664_01.tiff,0 +PIT_01_05671_01,PIT_01_05671_01.tiff,1 +PIT_01_05674_01,PIT_01_05674_01.tiff,4 +PIT_01_05675_01,PIT_01_05675_01.tiff,3 +PIT_01_05678_01,PIT_01_05678_01.tiff,0 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0000000000000000000000000000000000000000..5a920be0d8b0fa587b8531605af5437767271f31 --- /dev/null +++ b/tasks/REG_dataset/prostate_secondary_gleason/config.yaml @@ -0,0 +1,9 @@ +task_type: classification +organ: prostate +sample_col: filename +label_dict: + 0: '3' + 1: '4' + 2: '5' +metrics: +- weighted_kappa diff --git a/tasks/REG_dataset/prostate_secondary_gleason/task.csv b/tasks/REG_dataset/prostate_secondary_gleason/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..2c8c12a93676d2120f03e3ebd5e063001adc2dc2 --- /dev/null +++ b/tasks/REG_dataset/prostate_secondary_gleason/task.csv @@ -0,0 +1,1364 @@ +case_id,filename,label +PIT_01_05664_01,PIT_01_05664_01.tiff,0 +PIT_01_05671_01,PIT_01_05671_01.tiff,1 +PIT_01_05674_01,PIT_01_05674_01.tiff,2 +PIT_01_05675_01,PIT_01_05675_01.tiff,1 +PIT_01_05678_01,PIT_01_05678_01.tiff,0 +PIT_01_05683_01,PIT_01_05683_01.tiff,1 +PIT_01_05685_01,PIT_01_05685_01.tiff,0 +PIT_01_05689_01,PIT_01_05689_01.tiff,1 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b/tasks/REG_dataset/stomach_adenoma_dysplasia/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: stomach +sample_col: filename +label_dict: + 0: High-grade + 1: Low-grade diff --git a/tasks/REG_dataset/stomach_adenoma_dysplasia/task.csv b/tasks/REG_dataset/stomach_adenoma_dysplasia/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..278ded562b46324e03510b3a979c19c23e9cb26a --- /dev/null +++ b/tasks/REG_dataset/stomach_adenoma_dysplasia/task.csv @@ -0,0 +1,421 @@ +case_id,filename,label +PIT_01_07650_01,PIT_01_07650_01.tiff,1 +PIT_01_07653_01,PIT_01_07653_01.tiff,1 +PIT_01_07666_01,PIT_01_07666_01.tiff,1 +PIT_01_07675_01,PIT_01_07675_01.tiff,1 +PIT_01_07679_01,PIT_01_07679_01.tiff,1 +PIT_01_07683_01,PIT_01_07683_01.tiff,1 +PIT_01_07686_01,PIT_01_07686_01.tiff,1 +PIT_01_07687_01,PIT_01_07687_01.tiff,1 +PIT_01_07691_01,PIT_01_07691_01.tiff,1 +PIT_01_07693_01,PIT_01_07693_01.tiff,1 +PIT_01_07697_01,PIT_01_07697_01.tiff,1 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0000000000000000000000000000000000000000..ca2fa1951e9866b327901a89ea5f41c1de949c0d --- /dev/null +++ b/tasks/REG_dataset/stomach_histologic_type/config.yaml @@ -0,0 +1,12 @@ +task_type: classification +organ: stomach +sample_col: filename +label_dict: + 0: Adenocarcinoma + 1: Chronic gastritis + 2: GIST + 3: MALT lymphoma + 4: Malignant lymphoma + 5: Poorly cohesive carcinoma + 6: Small cell carcinoma + 7: Tubular adenoma diff --git a/tasks/REG_dataset/stomach_histologic_type/task.csv b/tasks/REG_dataset/stomach_histologic_type/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4531a82ec43103abda5d5da1b7f08bd3f24b51a5 --- /dev/null +++ b/tasks/REG_dataset/stomach_histologic_type/task.csv @@ -0,0 +1,1454 @@ +case_id,filename,label +PIT_01_07680_01,PIT_01_07680_01.tiff,0 +PIT_01_07696_01,PIT_01_07696_01.tiff,0 +PIT_01_07729_01,PIT_01_07729_01.tiff,0 +PIT_01_07734_01,PIT_01_07734_01.tiff,0 +PIT_01_07783_01,PIT_01_07783_01.tiff,0 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b/tasks/REG_dataset/stomach_intestinal_metaplasia/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..a43122d347be71632d9b6a7b1669084205ed152e --- /dev/null +++ b/tasks/REG_dataset/stomach_intestinal_metaplasia/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: stomach +sample_col: filename +label_dict: + 0: Absent + 1: Present diff --git a/tasks/REG_dataset/stomach_intestinal_metaplasia/task.csv b/tasks/REG_dataset/stomach_intestinal_metaplasia/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..54e45e178160224aaf1f066afe01efb69efcec32 --- /dev/null +++ b/tasks/REG_dataset/stomach_intestinal_metaplasia/task.csv @@ -0,0 +1,257 @@ +case_id,filename,label +PIT_01_07646_01,PIT_01_07646_01.tiff,0 +PIT_01_07658_01,PIT_01_07658_01.tiff,0 +PIT_01_07660_01,PIT_01_07660_01.tiff,0 +PIT_01_07664_01,PIT_01_07664_01.tiff,0 +PIT_01_07669_01,PIT_01_07669_01.tiff,0 +PIT_01_07758_01,PIT_01_07758_01.tiff,0 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diff --git a/tasks/REG_dataset/stomach_malignant_vs_benign/config.yaml b/tasks/REG_dataset/stomach_malignant_vs_benign/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..b9350a787b4c69735e8793013f965060695b367b --- /dev/null +++ b/tasks/REG_dataset/stomach_malignant_vs_benign/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: stomach +sample_col: filename +label_dict: + 0: Benign + 1: Malignant + 2: Pre-malignant diff --git a/tasks/REG_dataset/stomach_malignant_vs_benign/task.csv b/tasks/REG_dataset/stomach_malignant_vs_benign/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0b2111362be287f226e3eea788b54c4c2753d2b0 --- /dev/null +++ b/tasks/REG_dataset/stomach_malignant_vs_benign/task.csv @@ -0,0 +1,1464 @@ +case_id,filename,label +PIT_01_07680_01,PIT_01_07680_01.tiff,1 +PIT_01_07696_01,PIT_01_07696_01.tiff,1 +PIT_01_07729_01,PIT_01_07729_01.tiff,1 +PIT_01_07734_01,PIT_01_07734_01.tiff,1 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22: MACR + 23: MEL + 24: MFH + 25: MFS + 26: NSGCT + 27: OAST + 28: ODG + 29: PAAD + 30: PHC + 31: PLEMESO + 32: PRAD + 33: PRCC + 34: READ + 35: SEM + 36: SKCM + 37: STAD + 38: THFO + 39: THPA + 40: THYM + 41: TSTAD + 42: UCS + 43: UEC + 44: UM + 45: USC diff --git a/tasks/TCGA/cancer_type_classification/task.csv b/tasks/TCGA/cancer_type_classification/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..3fcd66f587afd91b46001a6d3257577977648640 --- /dev/null +++ b/tasks/TCGA/cancer_type_classification/task.csv @@ -0,0 +1,11186 @@ +filename,case_id,label +TCGA-DG-A2KK-01Z-00-DX1.248D92C3-AD5B-4F3C-AE5C-6F8C70C7AE87.svs,8dbcb17d-0396-4faa-9b32-8e2566424bff,6 +TCGA-EM-A3O8-01Z-00-DX1.B164A20B-7433-420A-B947-C78CEB49B7D2.svs,97b5017c-2066-4472-ab3f-31cfe64a6762,38 +TCGA-ZB-A96B-01Z-00-DX1.1F7C775D-4468-47FB-AF46-80C5C42D8A4F.svs,5324c178-1b4b-42f8-ac9e-17c5f349a289,40 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Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_ACC/DFI/task.csv b/tasks/TCGA_ACC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..515475ff6fb7a5485293454e36092d8b1d29f51d --- /dev/null +++ b/tasks/TCGA_ACC/DFI/task.csv @@ -0,0 +1,133 @@ +case_id,filename,DFI_event,DFI_days,DFI +0b73cbba-5520-4610-b649-912d76114033,TCGA-OR-A5JP-01Z-00-DX1.15ED1958-011D-4247-91A3-99893466935D.svs,0,464.0,0 +0b73cbba-5520-4610-b649-912d76114033,TCGA-OR-A5JP-01Z-00-DX2.5BA035C7-1D67-4DF2-A932-EFBD045D2262.svs,0,464.0,0 +0acc28bc-d348-41df-8f49-bc0332eb9be4,TCGA-OR-A5JL-01Z-00-DX4.9745EBFA-6050-46F9-8683-0D480F649349.svs,0,2056.0,2 +0acc28bc-d348-41df-8f49-bc0332eb9be4,TCGA-OR-A5JL-01Z-00-DX2.2C12A8F7-C0CE-48DE-B007-9EBE72645512.svs,0,2056.0,2 +0304b12d-7640-4150-a581-2eea2b1f2ad5,TCGA-OR-A5LL-01Z-00-DX2.CABC0142-8C39-4801-8256-03129F111343.svs,1,213.0,4 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b/tasks/TCGA_ACC/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: adrenal gland +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_ACC/DSS/task.csv b/tasks/TCGA_ACC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d1e9e14251622f0126243fb914cdbc6fcfa1acc3 --- /dev/null +++ b/tasks/TCGA_ACC/DSS/task.csv @@ -0,0 +1,220 @@ +case_id,filename,DSS_event,DSS_days,DSS +0b73cbba-5520-4610-b649-912d76114033,TCGA-OR-A5JP-01Z-00-DX1.15ED1958-011D-4247-91A3-99893466935D.svs,0,464.0,0 +0b73cbba-5520-4610-b649-912d76114033,TCGA-OR-A5JP-01Z-00-DX2.5BA035C7-1D67-4DF2-A932-EFBD045D2262.svs,0,464.0,0 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b/tasks/TCGA_BLCA/MET_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..9c2aabec024f10bf9b1c58a6eacab9fc74c417e0 --- /dev/null +++ b/tasks/TCGA_BLCA/MET_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: bladder +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_BLCA/MET_mutation/task.csv b/tasks/TCGA_BLCA/MET_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ab6aaee3f131b2830815ae6cf1da7a13d1e44e91 --- /dev/null +++ b/tasks/TCGA_BLCA/MET_mutation/task.csv @@ -0,0 +1,458 @@ +case_id,filename,label +ebc094a6-cdc9-4c02-b8ec-a181b25a364d,TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs,0 +d2df20d4-6704-41e6-b33d-616225bd737c,TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs,0 +d2f329b3-5b44-414b-bccd-7b2d1345d21e,TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs,1 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0000000000000000000000000000000000000000..72ec5c2ae9e909381041bc8dc8c5bfc06442bf80 --- /dev/null +++ b/tasks/TCGA_BLCA/PFI/task.csv @@ -0,0 +1,458 @@ +case_id,filename,PFI_event,PFI_days,PFI +ebc094a6-cdc9-4c02-b8ec-a181b25a364d,TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs,1,216.0,5 +d2df20d4-6704-41e6-b33d-616225bd737c,TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs,0,333.0,1 +d2f329b3-5b44-414b-bccd-7b2d1345d21e,TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs,0,410.0,1 +cd20b968-b348-44eb-9cdb-f557af8fb468,TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs,1,324.0,5 +f3104468-bf17-434b-8a7e-bc3b253121ea,TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs,1,283.0,5 +f8780a4b-7f55-41d1-bf92-8513955d150e,TCGA-BT-A20R-01Z-00-DX1.38320FC0-F1E5-401B-9336-D77796456B30.svs,0,154.0,0 +fe33e5e0-a54d-481a-897c-e32b4708da69,TCGA-UY-A8OB-01Z-00-DX1.9DD447FB-44F0-4FFF-8293-9FF0D54A96A0.svs,0,2109.0,3 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b/tasks/TCGA_BLCA/SETD2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: bladder +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_BLCA/SETD2_mutation/task.csv b/tasks/TCGA_BLCA/SETD2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..87068694c62b7528180668c93f902131533ec635 --- /dev/null +++ b/tasks/TCGA_BLCA/SETD2_mutation/task.csv @@ -0,0 +1,458 @@ +case_id,filename,label +ebc094a6-cdc9-4c02-b8ec-a181b25a364d,TCGA-BL-A13I-01Z-00-DX2.251412B0-EECB-420A-B963-B19432DB3F29.svs,0 +d2df20d4-6704-41e6-b33d-616225bd737c,TCGA-CF-A47S-01Z-00-DX1.1397F7C0-1098-4C42-B158-28A37723F5F6.svs,0 +d2f329b3-5b44-414b-bccd-7b2d1345d21e,TCGA-MV-A51V-01Z-00-DX1.5D626704-0803-4912-96D5-FB1EEFA509FB.svs,0 +cd20b968-b348-44eb-9cdb-f557af8fb468,TCGA-GU-AATO-01Z-00-DX1.1F0F2098-E4DF-4AA3-819E-E0DE23C5A0BE.svs,0 +f3104468-bf17-434b-8a7e-bc3b253121ea,TCGA-DK-A1AF-01Z-00-DX1.E18DE029-27A6-43A6-9E9D-D0225C7D5324.svs,0 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b/tasks/TCGA_BRCA/BAP1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: breast +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_BRCA/BAP1_mutation/task.csv b/tasks/TCGA_BRCA/BAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..157d852506ac8e2e9ace56febc9536dffc95ce7b --- /dev/null +++ b/tasks/TCGA_BRCA/BAP1_mutation/task.csv @@ -0,0 +1,1134 @@ +case_id,filename,label +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX2.CF4496E0-AB52-4F3E-BDF5-C34833B91B7C.svs,0 +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs,0 +db4bc6aa-2e7d-4bcb-8519-a455f624d33b,TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.svs,0 +56203436-8634-4fd0-96b5-ba6be9d87857,TCGA-D8-A1JK-01Z-00-DX1.3190C919-A403-460D-9F6C-D2AB5FD3FD05.svs,0 +dba9beec-5e51-48c0-9229-0ee286a02a1a,TCGA-BH-A0DD-01Z-00-DX1.2242DD1F-0B7C-4B43-A7A9-8130D2BDEE78.svs,0 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b/tasks/TCGA_BRCA/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: breast +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_BRCA/DSS/task.csv b/tasks/TCGA_BRCA/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4d015c306a046c0c71a0445acfe3221922923aa8 --- /dev/null +++ b/tasks/TCGA_BRCA/DSS/task.csv @@ -0,0 +1,1114 @@ +case_id,filename,DSS_event,DSS_days,DSS +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX2.CF4496E0-AB52-4F3E-BDF5-C34833B91B7C.svs,0,4005.0,3 +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs,0,4005.0,3 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0000000000000000000000000000000000000000..b34991138086c005f3567aef52b5a5dd9817bdd1 --- /dev/null +++ b/tasks/TCGA_BRCA/ERBB2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: breast +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_BRCA/ERBB2_mutation/task.csv b/tasks/TCGA_BRCA/ERBB2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..802fdfddba4571bd0d367f64bd999ffe500edfaf --- /dev/null +++ b/tasks/TCGA_BRCA/ERBB2_mutation/task.csv @@ -0,0 +1,1134 @@ +case_id,filename,label +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX2.CF4496E0-AB52-4F3E-BDF5-C34833B91B7C.svs,0 +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs,0 +db4bc6aa-2e7d-4bcb-8519-a455f624d33b,TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.svs,0 +56203436-8634-4fd0-96b5-ba6be9d87857,TCGA-D8-A1JK-01Z-00-DX1.3190C919-A403-460D-9F6C-D2AB5FD3FD05.svs,0 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3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_BRCA/PFI/task.csv b/tasks/TCGA_BRCA/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..7aa26919eaa96d2fcb10fac1b133e85308620080 --- /dev/null +++ b/tasks/TCGA_BRCA/PFI/task.csv @@ -0,0 +1,1133 @@ +case_id,filename,PFI_event,PFI_days,PFI +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX2.CF4496E0-AB52-4F3E-BDF5-C34833B91B7C.svs,0,4005.0,3 +55262fcb-1b01-4480-b322-36570430c917,TCGA-3C-AALI-01Z-00-DX1.F6E9A5DF-D8FB-45CF-B4BD-C6B76294C291.svs,0,4005.0,3 +db4bc6aa-2e7d-4bcb-8519-a455f624d33b,TCGA-BH-A18Q-01Z-00-DX1.E89E49C7-D62A-4408-A3D9-19E79FCB249E.svs,0,1692.0,3 +56203436-8634-4fd0-96b5-ba6be9d87857,TCGA-D8-A1JK-01Z-00-DX1.3190C919-A403-460D-9F6C-D2AB5FD3FD05.svs,0,612.0,1 +dba9beec-5e51-48c0-9229-0ee286a02a1a,TCGA-BH-A0DD-01Z-00-DX1.2242DD1F-0B7C-4B43-A7A9-8130D2BDEE78.svs,0,2486.0,3 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b/tasks/TCGA_CESC/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..b1fbf05efc98b9f2b47694751989f4ce3017a4e3 --- /dev/null +++ b/tasks/TCGA_CESC/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: cervix uteri +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CESC/DFI/task.csv b/tasks/TCGA_CESC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..874e9dd6d29ce3b54af0cc0a198672c5f3e7608a --- /dev/null +++ b/tasks/TCGA_CESC/DFI/task.csv @@ -0,0 +1,175 @@ +case_id,filename,DFI_event,DFI_days,DFI +67195401-9099-4ca9-9790-f42bcb815289,TCGA-GH-A9DA-01Z-00-DX1.14102CF2-DFD2-4A7C-9394-AEE0A25DEEA9.svs,0,540.0,1 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Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CESC/DSS/task.csv b/tasks/TCGA_CESC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..8b65b147f360faed835bf7443e00762849e3d10f --- /dev/null +++ b/tasks/TCGA_CESC/DSS/task.csv @@ -0,0 +1,277 @@ +case_id,filename,DSS_event,DSS_days,DSS +67195401-9099-4ca9-9790-f42bcb815289,TCGA-GH-A9DA-01Z-00-DX1.14102CF2-DFD2-4A7C-9394-AEE0A25DEEA9.svs,0,540.0,1 +6bcf8b41-7abc-4b6f-899a-1f67b4ada765,TCGA-HM-A4S6-01Z-00-DX1.B1F46381-4FBC-46D1-A8AA-729D136AB2ED.svs,0,454.0,1 +60117b70-36c0-41bb-a9fc-85db8fa10102,TCGA-VS-A9UA-01Z-00-DX1.0D99930B-9559-4C54-AA22-29ABB0972577.svs,0,867.0,2 +57902b91-be42-441d-8807-a5ea9c21b214,TCGA-C5-A7X8-01Z-00-DX1.868FD898-B9FA-4A24-AC99-1B81D8A456B4.svs,0,83.0,0 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100644 index 0000000000000000000000000000000000000000..3557e698cb09c565ad48ee369c658dc950d7fff5 --- /dev/null +++ b/tasks/TCGA_CESC/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: cervix uteri +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CESC/OS/task.csv b/tasks/TCGA_CESC/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d8630b20fa7bbb2a924f70a50aeef2251c7dd24a --- /dev/null +++ b/tasks/TCGA_CESC/OS/task.csv @@ -0,0 +1,280 @@ +case_id,filename,OS_event,OS_days,OS +67195401-9099-4ca9-9790-f42bcb815289,TCGA-GH-A9DA-01Z-00-DX1.14102CF2-DFD2-4A7C-9394-AEE0A25DEEA9.svs,0,540.0,1 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+task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CESC/PFI/task.csv b/tasks/TCGA_CESC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..c9a09fde1d884159ff79bfea46a1ffcd5eb209dd --- /dev/null +++ b/tasks/TCGA_CESC/PFI/task.csv @@ -0,0 +1,280 @@ +case_id,filename,PFI_event,PFI_days,PFI +67195401-9099-4ca9-9790-f42bcb815289,TCGA-GH-A9DA-01Z-00-DX1.14102CF2-DFD2-4A7C-9394-AEE0A25DEEA9.svs,0,540.0,1 +6bcf8b41-7abc-4b6f-899a-1f67b4ada765,TCGA-HM-A4S6-01Z-00-DX1.B1F46381-4FBC-46D1-A8AA-729D136AB2ED.svs,0,454.0,1 +60117b70-36c0-41bb-a9fc-85db8fa10102,TCGA-VS-A9UA-01Z-00-DX1.0D99930B-9559-4C54-AA22-29ABB0972577.svs,0,867.0,2 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DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CHOL/DFI/task.csv b/tasks/TCGA_CHOL/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..bed69870d9b970421f373274e944312b313b66c1 --- /dev/null +++ b/tasks/TCGA_CHOL/DFI/task.csv @@ -0,0 +1,26 @@ +case_id,filename,DFI_event,DFI_days,DFI +3c8ca064-a4a7-416f-a069-4324d4a72038,TCGA-W5-AA2I-01Z-00-DX1.7A0ED531-4BC7-4CF8-AD01-C57D9070B2EB.svs,0,1939.0,3 +5cf3911a-f3ea-4c0e-851d-5bb57ca7190f,TCGA-ZH-A8Y8-01Z-00-DX1.174309BD-9629-4567-9646-A18CD9D54FDE.svs,0,602.0,2 +f47dbd99-920b-4b39-a1b0-6c152ad24884,TCGA-W5-AA2Q-01Z-00-DX1.6548C6C8-A24B-426B-A01C-F6E067CC8381.svs,0,50.0,0 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+sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CHOL/DSS/task.csv b/tasks/TCGA_CHOL/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..2968d30efb9a38e88a83e323768ac4bb5f3f31f6 --- /dev/null +++ b/tasks/TCGA_CHOL/DSS/task.csv @@ -0,0 +1,39 @@ +case_id,filename,DSS_event,DSS_days,DSS +1947a152-6339-4f66-b9a4-0229580f0287,TCGA-ZH-A8Y3-01Z-00-DX1.D4110867-EC54-4455-A335-3CB51AF67908.svs,1,561.0,5 +f2d42e03-ca8d-4b57-ae39-0cc8f37b1b67,TCGA-W5-AA36-01Z-00-DX1.3BA86FC3-7B7F-462B-A220-D23F295A2E95.svs,1,1402.0,7 +1d136284-bdf5-498e-9506-4893801a337c,TCGA-W5-AA2W-01Z-00-DX1.8EF8CC01-E6E2-4197-BDE7-6184D327A161.svs,1,924.0,6 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+bc15cec4-1f82-47fe-ae69-3853194fab7e,TCGA-W5-AA2H-01Z-00-DX1.55FD7D7E-F9AE-4102-A85A-9D45202DFA1C.svs,0,1077.0,2 +ccb028ae-777c-4af6-b92e-40848f1cf774,TCGA-ZD-A8I3-01Z-00-DX1.ECD6891B-38C1-4A52-97C1-ABAD5BB43D6A.svs,1,169.0,4 +dcc87c59-fd8c-4511-9983-96d5b9784cb0,TCGA-3X-AAVE-01Z-00-DX1.26FC1984-B066-4BE4-9A5A-DFEC74D4C582.svs,0,650.0,1 diff --git a/tasks/TCGA_CHOL/OS/config.yaml b/tasks/TCGA_CHOL/OS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..b397cfadd21664594066b084904fdde54d4c155a --- /dev/null +++ b/tasks/TCGA_CHOL/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: liver and intrahepatic bile ducts +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_CHOL/OS/task.csv b/tasks/TCGA_CHOL/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9c609d04e7768504fe71f6c05f5a367bd54a9ceb --- /dev/null +++ b/tasks/TCGA_CHOL/OS/task.csv @@ -0,0 +1,40 @@ +case_id,filename,OS_event,OS_days,OS +1947a152-6339-4f66-b9a4-0229580f0287,TCGA-ZH-A8Y3-01Z-00-DX1.D4110867-EC54-4455-A335-3CB51AF67908.svs,1,561.0,5 +f2d42e03-ca8d-4b57-ae39-0cc8f37b1b67,TCGA-W5-AA36-01Z-00-DX1.3BA86FC3-7B7F-462B-A220-D23F295A2E95.svs,1,1402.0,7 +1d136284-bdf5-498e-9506-4893801a337c,TCGA-W5-AA2W-01Z-00-DX1.8EF8CC01-E6E2-4197-BDE7-6184D327A161.svs,1,924.0,6 +3c8ca064-a4a7-416f-a069-4324d4a72038,TCGA-W5-AA2I-01Z-00-DX1.7A0ED531-4BC7-4CF8-AD01-C57D9070B2EB.svs,1,1939.0,7 +5cf3911a-f3ea-4c0e-851d-5bb57ca7190f,TCGA-ZH-A8Y8-01Z-00-DX1.174309BD-9629-4567-9646-A18CD9D54FDE.svs,0,602.0,1 +6e534dd3-81ac-4575-ab1e-02c21e10916d,TCGA-W5-AA2X-01Z-00-DX1.B584C604-4CB3-43E4-9845-C94B199B64B3.svs,1,271.0,4 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/dev/null +++ b/tasks/TCGA_CHOL/tumor_grade/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: liver and intrahepatic bile ducts +sample_col: case_id +label_dict: + 0: G2 + 1: G3 diff --git a/tasks/TCGA_CHOL/tumor_grade/task.csv b/tasks/TCGA_CHOL/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..aadfc225344c0c15727e3b1516346ee9a31cdc0b --- /dev/null +++ b/tasks/TCGA_CHOL/tumor_grade/task.csv @@ -0,0 +1,37 @@ +case_id,filename,label +1947a152-6339-4f66-b9a4-0229580f0287,TCGA-ZH-A8Y3-01Z-00-DX1.D4110867-EC54-4455-A335-3CB51AF67908.svs,0 +f2d42e03-ca8d-4b57-ae39-0cc8f37b1b67,TCGA-W5-AA36-01Z-00-DX1.3BA86FC3-7B7F-462B-A220-D23F295A2E95.svs,1 +1d136284-bdf5-498e-9506-4893801a337c,TCGA-W5-AA2W-01Z-00-DX1.8EF8CC01-E6E2-4197-BDE7-6184D327A161.svs,1 +3c8ca064-a4a7-416f-a069-4324d4a72038,TCGA-W5-AA2I-01Z-00-DX1.7A0ED531-4BC7-4CF8-AD01-C57D9070B2EB.svs,0 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b/tasks/TCGA_COAD/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..6d8e29d560ba1c07f4b0ab125c724b053b63bda9 --- /dev/null +++ b/tasks/TCGA_COAD/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: colon +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_COAD/DFI/task.csv b/tasks/TCGA_COAD/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..05c47ecdd688a02cb73696ac537625a017dc4e3a --- /dev/null +++ b/tasks/TCGA_COAD/DFI/task.csv @@ -0,0 +1,192 @@ +case_id,filename,DFI_event,DFI_days,DFI +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0,945.0,2 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+task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_COAD/DSS/task.csv b/tasks/TCGA_COAD/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9a31662dbb74fbc874298101f8aed279baff6244 --- /dev/null +++ b/tasks/TCGA_COAD/DSS/task.csv @@ -0,0 +1,443 @@ +case_id,filename,DSS_event,DSS_days,DSS +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0,945.0,2 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0,1035.0,2 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,1,61.0,4 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0000000000000000000000000000000000000000..0ea519a0977c5b78525ba06ca1cf1c0a1c2bbc56 --- /dev/null +++ b/tasks/TCGA_COAD/FBXW7_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_COAD/FBXW7_mutation/task.csv b/tasks/TCGA_COAD/FBXW7_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..02b3831d024220080478969e4315026476c82985 --- /dev/null +++ b/tasks/TCGA_COAD/FBXW7_mutation/task.csv @@ -0,0 +1,460 @@ +case_id,filename,label +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,0 +2c9996bb-af6e-4424-881a-e81b9c9aeb78,TCGA-AA-3688-01Z-00-DX1.642ce194-6dc0-4a96-aa79-674f48966df3.svs,0 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b/tasks/TCGA_COAD/IDH2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..678b4e4d77a62c3048ddbca874102003597b177b --- /dev/null +++ b/tasks/TCGA_COAD/IDH2_mutation/task.csv @@ -0,0 +1,460 @@ +case_id,filename,label +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,0 +2c9996bb-af6e-4424-881a-e81b9c9aeb78,TCGA-AA-3688-01Z-00-DX1.642ce194-6dc0-4a96-aa79-674f48966df3.svs,0 +14c13b05-abfe-472e-83a9-b28f60e58ad8,TCGA-G4-6310-01Z-00-DX1.b88472d4-3adc-4e4d-b0f2-0dc195a3d7df.svs,0 +93690a96-421c-4c59-85ba-fa6dd538c721,TCGA-G4-6588-01Z-00-DX1.0747172e-f630-4b7c-9341-55078585ae00.svs,0 +5e7074a6-5011-4dc5-950c-41365dbc6d09,TCGA-AD-6964-01Z-00-DX1.83AF88B9-C59B-48C6-A739-85ACB8F8ECA9.svs,0 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b/tasks/TCGA_COAD/MET_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..0ea519a0977c5b78525ba06ca1cf1c0a1c2bbc56 --- /dev/null +++ b/tasks/TCGA_COAD/MET_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_COAD/MET_mutation/task.csv b/tasks/TCGA_COAD/MET_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9623300f1f6fe3f80da5db8c83589b1431f0084c --- /dev/null +++ b/tasks/TCGA_COAD/MET_mutation/task.csv @@ -0,0 +1,460 @@ +case_id,filename,label +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,0 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+label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_COAD/OS/task.csv b/tasks/TCGA_COAD/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..77fd1887f368117d3b5ed0ac63a139c6fd0e7b98 --- /dev/null +++ b/tasks/TCGA_COAD/OS/task.csv @@ -0,0 +1,458 @@ +case_id,filename,OS_event,OS_days,OS +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0,945.0,2 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0,1035.0,2 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,1,61.0,4 +2c9996bb-af6e-4424-881a-e81b9c9aeb78,TCGA-AA-3688-01Z-00-DX1.642ce194-6dc0-4a96-aa79-674f48966df3.svs,0,578.0,1 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+ 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_COAD/PFI/task.csv b/tasks/TCGA_COAD/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6bb62cd774c53decf1656ad7d93e58515591a573 --- /dev/null +++ b/tasks/TCGA_COAD/PFI/task.csv @@ -0,0 +1,458 @@ +case_id,filename,PFI_event,PFI_days,PFI +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0,945.0,2 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0,1035.0,3 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,1,61.0,4 +2c9996bb-af6e-4424-881a-e81b9c9aeb78,TCGA-AA-3688-01Z-00-DX1.642ce194-6dc0-4a96-aa79-674f48966df3.svs,0,578.0,1 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a/tasks/TCGA_COAD/PIK3CA_mutation/task.csv b/tasks/TCGA_COAD/PIK3CA_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..7dbcca214dadbe82aac6dc7fefd7cc4908f85e32 --- /dev/null +++ b/tasks/TCGA_COAD/PIK3CA_mutation/task.csv @@ -0,0 +1,460 @@ +case_id,filename,label +ac6a3df9-41b1-4e5a-a15e-f44481384c23,TCGA-AA-3860-01Z-00-DX1.a63df9ca-6141-4bdc-8545-719fd9ae0aa5.svs,0 +401a37f3-6630-4400-a811-a262351e37de,TCGA-AA-3531-01Z-00-DX1.19cdaa4b-5a53-4198-90da-5800827d90bf.svs,0 +c1e141af-bdd1-4176-8c0e-cf1ab0c1d9d3,TCGA-AA-3952-01Z-00-DX1.6a51a689-74cb-4204-9f7a-f5e3fc55fb2d.svs,0 +2c9996bb-af6e-4424-881a-e81b9c9aeb78,TCGA-AA-3688-01Z-00-DX1.642ce194-6dc0-4a96-aa79-674f48966df3.svs,0 +14c13b05-abfe-472e-83a9-b28f60e58ad8,TCGA-G4-6310-01Z-00-DX1.b88472d4-3adc-4e4d-b0f2-0dc195a3d7df.svs,0 +93690a96-421c-4c59-85ba-fa6dd538c721,TCGA-G4-6588-01Z-00-DX1.0747172e-f630-4b7c-9341-55078585ae00.svs,0 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a/tasks/TCGA_COAD/primary_diagnosis/config.yaml b/tasks/TCGA_COAD/primary_diagnosis/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..4842d5faccaafbfac48f23467cc982aadc9f6334 --- /dev/null +++ b/tasks/TCGA_COAD/primary_diagnosis/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colorectal +sample_col: filename +label_dict: + 0: "Adenocarcinoma, NOS" + 1: "Mucinous adenocarcinoma" diff --git a/tasks/TCGA_COAD/primary_diagnosis/task.csv b/tasks/TCGA_COAD/primary_diagnosis/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a992cc6ca5968b81394f6676cf2b896ae6f62695 --- /dev/null +++ b/tasks/TCGA_COAD/primary_diagnosis/task.csv @@ -0,0 +1,438 @@ +case_id,filename,label +01240896-3f3f-4bf9-9799-55c87bfacf36,TCGA-F4-6854-01Z-00-DX1.a4d18769-1632-41e4-b49d-4a88d36e21ab.svs,0 +01ad5016-f691-4bca-82a0-910429d8d25b,TCGA-AA-3561-01Z-00-DX1.1b5a2925-53f9-470f-a62c-cc2e5d5abb58.svs,0 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+fdffda5f-72b2-4153-b7f1-d7043b7ca898,TCGA-AA-3818-01Z-00-DX1.80d3eeeb-9a4d-4211-90e8-605a4b809a63.svs,0 +ff1407c6-9174-4bae-a19b-d34ca71b898c,TCGA-A6-2680-01Z-00-DX1.7b77c0fb-f51d-4d16-ae77-f7615b1d0b87.svs,0 +ffa7e03a-4a3c-41f0-937a-4fb862fd2194,TCGA-DM-A28G-01Z-00-DX1.5e8602bd-31e1-4813-8214-cd56280defe5.svs,0 diff --git a/tasks/TCGA_DLBC/DFI/config.yaml b/tasks/TCGA_DLBC/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..bc16866d66efdfb64871b36cb1364ca54974f86d --- /dev/null +++ b/tasks/TCGA_DLBC/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: lymph node +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_DLBC/DFI/task.csv b/tasks/TCGA_DLBC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..85e0976f8ee3c046557dd9f3333c1684ee8d3fb2 --- /dev/null +++ b/tasks/TCGA_DLBC/DFI/task.csv @@ -0,0 +1,28 @@ +case_id,filename,DFI_event,DFI_days,DFI +1f971af1-6772-4fe6-8d35-bbe527a037fe,TCGA-FF-8041-01Z-00-DX1.b9ba3fca-9adc-43d2-8439-7231a5be67a9.svs,0,1081.0,2 +45b0cf9f-a879-417f-8f39-7770552252c0,TCGA-GS-A9TQ-01Z-00-DX1.AC86A0E2-8FBA-4A3D-A1C8-BB403D9C93E8.svs,0,982.0,2 +29aff186-c321-4ff9-b81b-105e27e620ff,TCGA-GS-A9TW-01Z-00-DX1.D38BD003-8DF1-4740-B83D-3426B00EF686.svs,0,1617.0,2 +69f23725-adca-48ac-9b33-80a7aae24cfe,TCGA-FA-A6HO-01Z-00-DX1.9E6256E7-5C4A-4D57-9810-8F52D3826BC7.svs,1,739.0,5 +c8cde9ea-89e9-4ee8-8a46-417a48f6d3ab,TCGA-FF-8061-01Z-00-DX1.c48e8418-275d-403d-b645-71eac3fb5c2d.svs,0,832.0,1 +67325322-483f-443f-9ffa-2a20d108a2fb,TCGA-FF-8046-01Z-00-DX1.074ee1a6-9809-450d-bf4e-42230ce9ef70.svs,0,751.0,1 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Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_DLBC/DSS/task.csv b/tasks/TCGA_DLBC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..1030f9f015b9618f8e54f3d2f967667de9ccd3bc --- /dev/null +++ b/tasks/TCGA_DLBC/DSS/task.csv @@ -0,0 +1,45 @@ +case_id,filename,DSS_event,DSS_days,DSS +1f971af1-6772-4fe6-8d35-bbe527a037fe,TCGA-FF-8041-01Z-00-DX1.b9ba3fca-9adc-43d2-8439-7231a5be67a9.svs,0,1081.0,2 +45b0cf9f-a879-417f-8f39-7770552252c0,TCGA-GS-A9TQ-01Z-00-DX1.AC86A0E2-8FBA-4A3D-A1C8-BB403D9C93E8.svs,0,982.0,2 +29aff186-c321-4ff9-b81b-105e27e620ff,TCGA-GS-A9TW-01Z-00-DX1.D38BD003-8DF1-4740-B83D-3426B00EF686.svs,0,1617.0,3 +5eff68ff-f6c3-40c9-9fc8-00e684a7b712,TCGA-GR-A4D9-01Z-00-DX1.443D848D-2F3A-461D-8990-2C823D783B0A.svs,0,1739.0,3 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100644 index 0000000000000000000000000000000000000000..7f5c608cc6323beefa3435c0af488f1cb5e17d4f --- /dev/null +++ b/tasks/TCGA_DLBC/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: lymph node +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_DLBC/OS/task.csv b/tasks/TCGA_DLBC/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..255eb381cd50b4b4b2443356f958f2aa2490d29c --- /dev/null +++ b/tasks/TCGA_DLBC/OS/task.csv @@ -0,0 +1,45 @@ +case_id,filename,OS_event,OS_days,OS +1f971af1-6772-4fe6-8d35-bbe527a037fe,TCGA-FF-8041-01Z-00-DX1.b9ba3fca-9adc-43d2-8439-7231a5be67a9.svs,0,1081.0,2 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+fdecb74f-ac4e-46b1-b23a-5f7fde96ef9f,TCGA-GS-A9U3-01Z-00-DX1.2A338F39-0486-45EF-B829-19360F2E2FC9.svs,0,3394.0,3 +6a21c948-cd85-4150-8c01-83017d7dc1ed,TCGA-G8-6324-01Z-00-DX1.30727896-3e02-44c8-a7b2-745f70c441ed.svs,1,1252.0,6 +b56bdbdb-43af-4a03-a072-54dd22d7550c,TCGA-FA-A86F-01Z-00-DX1.EE36DC3F-7539-41E8-ADF6-6BA0FB0F47C4.svs,0,553.0,0 diff --git a/tasks/TCGA_DLBC/PFI/config.yaml b/tasks/TCGA_DLBC/PFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..8a12c55c9310deb9bdd32a21d6666825e80488a6 --- /dev/null +++ b/tasks/TCGA_DLBC/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: lymph node +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_DLBC/PFI/task.csv b/tasks/TCGA_DLBC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a9766713c11cbfa956b88e24de00139d72bd6106 --- /dev/null +++ b/tasks/TCGA_DLBC/PFI/task.csv @@ -0,0 +1,45 @@ +case_id,filename,PFI_event,PFI_days,PFI +1f971af1-6772-4fe6-8d35-bbe527a037fe,TCGA-FF-8041-01Z-00-DX1.b9ba3fca-9adc-43d2-8439-7231a5be67a9.svs,0,1081.0,2 +45b0cf9f-a879-417f-8f39-7770552252c0,TCGA-GS-A9TQ-01Z-00-DX1.AC86A0E2-8FBA-4A3D-A1C8-BB403D9C93E8.svs,0,982.0,2 +29aff186-c321-4ff9-b81b-105e27e620ff,TCGA-GS-A9TW-01Z-00-DX1.D38BD003-8DF1-4740-B83D-3426B00EF686.svs,0,1617.0,3 +5eff68ff-f6c3-40c9-9fc8-00e684a7b712,TCGA-GR-A4D9-01Z-00-DX1.443D848D-2F3A-461D-8990-2C823D783B0A.svs,1,1218.0,6 +69f23725-adca-48ac-9b33-80a7aae24cfe,TCGA-FA-A6HO-01Z-00-DX1.9E6256E7-5C4A-4D57-9810-8F52D3826BC7.svs,1,739.0,5 +c8cde9ea-89e9-4ee8-8a46-417a48f6d3ab,TCGA-FF-8061-01Z-00-DX1.c48e8418-275d-403d-b645-71eac3fb5c2d.svs,0,832.0,1 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+task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_ESCA/DFI/task.csv b/tasks/TCGA_ESCA/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d2d57b0c9dbdae912974852e3bbd94bccefe553d --- /dev/null +++ b/tasks/TCGA_ESCA/DFI/task.csv @@ -0,0 +1,85 @@ +case_id,filename,DFI_event,DFI_days,DFI +3f7b600b-282e-4f35-9fd8-567b3fca8273,TCGA-IG-A4QT-01Z-00-DX1.0D12438B-B44B-434B-AFA0-9C22F8DB1EE9.svs,0,283.0,1 +8d3ccaf0-872a-4ee3-b4b7-847180fec3ab,TCGA-XP-A8T8-01Z-00-DX1.90E0B853-A751-4D13-B1D0-676754177C28.svs,0,437.0,2 +7a32847f-69bb-4592-8feb-cfd5d355ada9,TCGA-LN-A7HY-01Z-00-DX1.AEEADA09-F984-4A4D-93BD-B5FA02E3E743.svs,1,88.0,4 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Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_ESCA/OS/task.csv b/tasks/TCGA_ESCA/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..3ad1aaf6474a9104e349f27b9664fca7de242da8 --- /dev/null +++ b/tasks/TCGA_ESCA/OS/task.csv @@ -0,0 +1,159 @@ +case_id,filename,OS_event,OS_days,OS +3f7b600b-282e-4f35-9fd8-567b3fca8273,TCGA-IG-A4QT-01Z-00-DX1.0D12438B-B44B-434B-AFA0-9C22F8DB1EE9.svs,1,283.0,5 +6584fa8f-b4f4-4844-a71e-3bfb731ad445,TCGA-2H-A9GM-01Z-00-DX1.DC69739A-98B1-4ACA-94A4-A1B683124D1D.svs,1,424.0,6 +8d3ccaf0-872a-4ee3-b4b7-847180fec3ab,TCGA-XP-A8T8-01Z-00-DX1.90E0B853-A751-4D13-B1D0-676754177C28.svs,0,437.0,2 +7a32847f-69bb-4592-8feb-cfd5d355ada9,TCGA-LN-A7HY-01Z-00-DX1.AEEADA09-F984-4A4D-93BD-B5FA02E3E743.svs,0,366.0,1 +9559f579-5d9a-4c96-9836-8a039d394795,TCGA-L5-A4OT-01Z-00-DX1.23F2765D-7674-49EB-A932-5D63A0A2E551.svs,1,149.0,4 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classification +organ: esophagus +sample_col: filename +label_dict: + 0: "Squamous cell carcinoma, NOS" + 1: "Adenocarcinoma, NOS" diff --git a/tasks/TCGA_ESCA/primary_diagnosis/task.csv b/tasks/TCGA_ESCA/primary_diagnosis/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ccb9ba4a677a267526590116dfa10789a31b12ee --- /dev/null +++ b/tasks/TCGA_ESCA/primary_diagnosis/task.csv @@ -0,0 +1,148 @@ +case_id,filename,label +02d98b0a-8360-49b9-bbd6-b70c79cbd32d,TCGA-VR-AA4D-01Z-00-DX1.1267B1EC-1EBB-46AE-9AA3-9162F5559862.svs,1 +0396743b-98a6-4ad5-aa13-1b9b23e5b9f9,TCGA-JY-A6FD-01Z-00-DX1.9AD5430C-5B26-44F0-82FB-005436F5ABE6.svs,0 +0500f1a6-a528-43f3-b035-12d3b7c99c0f,TCGA-2H-A9GF-01Z-00-DX1.FA1016AF-3FE3-45DC-A77B-F1ACC2B33B2A.svs,1 +06ca7fc4-4ae0-47d5-9e83-f92ba42a957b,TCGA-L5-A43H-01Z-00-DX1.05652837-4FDF-4A30-80FF-C942FB9C62D9.svs,0 +078dc5f1-d2dc-4408-b785-27703c7813f1,TCGA-2H-A9GN-01Z-00-DX1.2373BEFC-931F-460D-8F6C-49C424600930.svs,1 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@@ -0,0 +1,7 @@ +task_type: classification +organ: esophagus +sample_col: case_id +label_dict: + 0: G1 + 1: G2 + 2: G3 diff --git a/tasks/TCGA_ESCA/tumor_grade/task.csv b/tasks/TCGA_ESCA/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..70ce590f95500cb45a17d1637aafc2df30583f95 --- /dev/null +++ b/tasks/TCGA_ESCA/tumor_grade/task.csv @@ -0,0 +1,141 @@ +case_id,filename,label +3f7b600b-282e-4f35-9fd8-567b3fca8273,TCGA-IG-A4QT-01Z-00-DX1.0D12438B-B44B-434B-AFA0-9C22F8DB1EE9.svs,1 +6584fa8f-b4f4-4844-a71e-3bfb731ad445,TCGA-2H-A9GM-01Z-00-DX1.DC69739A-98B1-4ACA-94A4-A1B683124D1D.svs,1 +8d3ccaf0-872a-4ee3-b4b7-847180fec3ab,TCGA-XP-A8T8-01Z-00-DX1.90E0B853-A751-4D13-B1D0-676754177C28.svs,0 +7a32847f-69bb-4592-8feb-cfd5d355ada9,TCGA-LN-A7HY-01Z-00-DX1.AEEADA09-F984-4A4D-93BD-B5FA02E3E743.svs,1 +b05aefc4-2d61-44b6-9451-e660d10d8a79,TCGA-LN-A49X-01Z-00-DX1.16959B16-CA82-4D8A-BD15-E87FC0095F86.svs,1 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b/tasks/TCGA_GBM/DSS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..eda88c0e9f553f2730a7f996c762c5a8c69b563e --- /dev/null +++ b/tasks/TCGA_GBM/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: brain +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_GBM/DSS/task.csv b/tasks/TCGA_GBM/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4aa407bc4eedd35b4388f13a469cc069417073e8 --- /dev/null +++ b/tasks/TCGA_GBM/DSS/task.csv @@ -0,0 +1,791 @@ +case_id,filename,DSS_event,DSS_days,DSS +3ed101b5-0007-4957-a25d-4cf43bde08b6,TCGA-06-6390-01Z-00-DX1.b5ab515a-7b50-4e73-a999-f581232b005a.svs,1,164.0,4 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0000000000000000000000000000000000000000..3a5e17d30444e91c115b54fc079d53ff0776065c --- /dev/null +++ b/tasks/TCGA_GBM/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: brain +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_GBM/OS/task.csv b/tasks/TCGA_GBM/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..8cf6841099fedfa79a46977b1c4fb37cdd861618 --- /dev/null +++ b/tasks/TCGA_GBM/OS/task.csv @@ -0,0 +1,861 @@ +case_id,filename,OS_event,OS_days,OS +3ed101b5-0007-4957-a25d-4cf43bde08b6,TCGA-06-6390-01Z-00-DX1.b5ab515a-7b50-4e73-a999-f581232b005a.svs,1,164.0,4 +3f960d3b-a58c-43d0-a8a4-f3555b399c9d,TCGA-06-5411-01Z-00-DX1.08bf7f79-7346-4b1b-b8a7-e24abf11e848.svs,1,254.0,5 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0000000000000000000000000000000000000000..e8191c855e67e0271a4cfd9dbf5b414ba4f48b3a --- /dev/null +++ b/tasks/TCGA_GBM/PFI/task.csv @@ -0,0 +1,861 @@ +case_id,filename,PFI_event,PFI_days,PFI +3ed101b5-0007-4957-a25d-4cf43bde08b6,TCGA-06-6390-01Z-00-DX1.b5ab515a-7b50-4e73-a999-f581232b005a.svs,1,164.0,5 +3f960d3b-a58c-43d0-a8a4-f3555b399c9d,TCGA-06-5411-01Z-00-DX1.08bf7f79-7346-4b1b-b8a7-e24abf11e848.svs,1,214.0,6 +407849a8-8447-4ede-a9d1-c1dfb535222e,TCGA-12-3648-01Z-00-DX2.81CB183D-4474-488B-8964-927C4A656C42.svs,1,86.0,4 +407849a8-8447-4ede-a9d1-c1dfb535222e,TCGA-12-3648-01Z-00-DX3.9172F115-4C1C-44CD-813F-492A9C08E88E.svs,1,86.0,4 +407849a8-8447-4ede-a9d1-c1dfb535222e,TCGA-12-3648-01Z-00-DX1.BB8213F9-1553-45D3-9F5C-DE8519B0F0CD.svs,1,86.0,4 +32afdc6c-e899-4795-9e90-c9a192bbc4c1,TCGA-06-0877-01Z-00-DX1.b936af27-4f87-44ba-8bb7-8f3f5b994961.svs,0,204.0,2 +32afdc6c-e899-4795-9e90-c9a192bbc4c1,TCGA-06-0877-01Z-00-DX2.b5af1c90-e841-49a9-906e-73fd6cba57be.svs,0,204.0,2 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a/tasks/TCGA_HNSC/CDKN2A_mutation/task.csv b/tasks/TCGA_HNSC/CDKN2A_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b0a8fc9655b96ae2b8f70158b27eeb295ccff243 --- /dev/null +++ b/tasks/TCGA_HNSC/CDKN2A_mutation/task.csv @@ -0,0 +1,473 @@ +case_id,filename,label +134223bd-5c03-4854-a034-ebd2c527833e,TCGA-CQ-A4C7-01Z-00-DX1.491FFBCB-ABD0-4D58-8CE7-A9E141A46DE5.svs,0 +4bfbce2b-9d0b-4e8a-950f-fd8e0ba3e05a,TCGA-BA-4077-01Z-00-DX1.547A89DF-9628-4594-BEB7-20EA7C5B5A5E.svs,0 +d8a6383e-3320-4d2c-9017-31e8e1e8f120,TCGA-IQ-7631-01Z-00-DX1.037140e2-1a55-48f3-92d1-ab3dda9b2a7b.svs,0 +8a3fdb52-63ef-48d7-95ff-167829825eb9,TCGA-DQ-7588-01Z-00-DX1.1D1253F5-7C5A-46B4-B796-7DE7ED828080.svs,0 +a4cb2c52-15e2-45c8-aff9-23339217d167,TCGA-CV-7437-01Z-00-DX1.3A0E4FC8-40D0-4D4A-9FAE-1B6BC9F00620.svs,0 +4648225e-5b68-488a-969a-e8d812190c6f,TCGA-DQ-7589-01Z-00-DX1.B0BF631F-6757-4ED6-A95F-E520BA6AFF98.svs,0 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+task_type: survival +organ: lip +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_HNSC/DFI/task.csv b/tasks/TCGA_HNSC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..e749aac86fe3400a89d6dd01881bc3807ffd5a8b --- /dev/null +++ b/tasks/TCGA_HNSC/DFI/task.csv @@ -0,0 +1,118 @@ +case_id,filename,DFI_event,DFI_days,DFI +134223bd-5c03-4854-a034-ebd2c527833e,TCGA-CQ-A4C7-01Z-00-DX1.491FFBCB-ABD0-4D58-8CE7-A9E141A46DE5.svs,1,207.0,4 +d8a6383e-3320-4d2c-9017-31e8e1e8f120,TCGA-IQ-7631-01Z-00-DX1.037140e2-1a55-48f3-92d1-ab3dda9b2a7b.svs,0,1172.0,2 +8ebe8c25-5ef9-42d4-9414-8313227b673f,TCGA-CQ-7068-01Z-00-DX1.4a9d6c19-4f72-4d00-97fa-70f72cd4ec0f.svs,0,1309.0,3 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100644 index 0000000000000000000000000000000000000000..0df4a128c9ad2e2f6756072651e165b0bf507021 --- /dev/null +++ b/tasks/TCGA_HNSC/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: lip +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_HNSC/PFI/task.csv b/tasks/TCGA_HNSC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ed7d7244868f1523c3c59fb945e35ccdc04627b1 --- /dev/null +++ b/tasks/TCGA_HNSC/PFI/task.csv @@ -0,0 +1,472 @@ +case_id,filename,PFI_event,PFI_days,PFI +134223bd-5c03-4854-a034-ebd2c527833e,TCGA-CQ-A4C7-01Z-00-DX1.491FFBCB-ABD0-4D58-8CE7-A9E141A46DE5.svs,1,207.0,4 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+organ: lip +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_HNSC/TP53_mutation/task.csv b/tasks/TCGA_HNSC/TP53_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6d7258e16fe8c3509e3559baa9cf8899d22cb659 --- /dev/null +++ b/tasks/TCGA_HNSC/TP53_mutation/task.csv @@ -0,0 +1,473 @@ +case_id,filename,label +134223bd-5c03-4854-a034-ebd2c527833e,TCGA-CQ-A4C7-01Z-00-DX1.491FFBCB-ABD0-4D58-8CE7-A9E141A46DE5.svs,1 +4bfbce2b-9d0b-4e8a-950f-fd8e0ba3e05a,TCGA-BA-4077-01Z-00-DX1.547A89DF-9628-4594-BEB7-20EA7C5B5A5E.svs,0 +d8a6383e-3320-4d2c-9017-31e8e1e8f120,TCGA-IQ-7631-01Z-00-DX1.037140e2-1a55-48f3-92d1-ab3dda9b2a7b.svs,0 +8a3fdb52-63ef-48d7-95ff-167829825eb9,TCGA-DQ-7588-01Z-00-DX1.1D1253F5-7C5A-46B4-B796-7DE7ED828080.svs,1 +a4cb2c52-15e2-45c8-aff9-23339217d167,TCGA-CV-7437-01Z-00-DX1.3A0E4FC8-40D0-4D4A-9FAE-1B6BC9F00620.svs,1 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0000000000000000000000000000000000000000..31a53563fbf0aba57ad6dee1064f5af4c5149c44 --- /dev/null +++ b/tasks/TCGA_HNSC/tumor_grade/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: lip +sample_col: case_id +label_dict: + 0: G1 + 1: G2 + 2: G3 diff --git a/tasks/TCGA_HNSC/tumor_grade/task.csv b/tasks/TCGA_HNSC/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9a7890e18510fab5b6e4ae9202e8abc8342d063e --- /dev/null +++ b/tasks/TCGA_HNSC/tumor_grade/task.csv @@ -0,0 +1,449 @@ +case_id,filename,label +134223bd-5c03-4854-a034-ebd2c527833e,TCGA-CQ-A4C7-01Z-00-DX1.491FFBCB-ABD0-4D58-8CE7-A9E141A46DE5.svs,2 +4bfbce2b-9d0b-4e8a-950f-fd8e0ba3e05a,TCGA-BA-4077-01Z-00-DX1.547A89DF-9628-4594-BEB7-20EA7C5B5A5E.svs,1 +d8a6383e-3320-4d2c-9017-31e8e1e8f120,TCGA-IQ-7631-01Z-00-DX1.037140e2-1a55-48f3-92d1-ab3dda9b2a7b.svs,0 +8a3fdb52-63ef-48d7-95ff-167829825eb9,TCGA-DQ-7588-01Z-00-DX1.1D1253F5-7C5A-46B4-B796-7DE7ED828080.svs,2 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100644 index 0000000000000000000000000000000000000000..137577821342e5c41db2d044cd8e95086ba35498 --- /dev/null +++ b/tasks/TCGA_KICH/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: kidney +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KICH/OS/task.csv b/tasks/TCGA_KICH/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6c3a2d74cfc6075f68e27bb85f4fb8814f4d8a27 --- /dev/null +++ b/tasks/TCGA_KICH/OS/task.csv @@ -0,0 +1,121 @@ +case_id,filename,OS_event,OS_days,OS +ec082842-b5e2-4673-b1d5-68ff36d3522b,TCGA-KM-A7QB-01Z-00-DX1.CC441A0F-8A5C-4406-8A8D-86CB62E7B114.svs,0,1094.0,1 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+++ b/tasks/TCGA_KICH/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: kidney +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KICH/PFI/task.csv b/tasks/TCGA_KICH/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..5f74070c0866959596ae98acf8a65d11ae9d464e --- /dev/null +++ b/tasks/TCGA_KICH/PFI/task.csv @@ -0,0 +1,121 @@ +case_id,filename,PFI_event,PFI_days,PFI +ec082842-b5e2-4673-b1d5-68ff36d3522b,TCGA-KM-A7QB-01Z-00-DX1.CC441A0F-8A5C-4406-8A8D-86CB62E7B114.svs,0,1094.0,1 +33ee63ed-6ff7-4145-bcb9-391b1d8867db,TCGA-UW-A72O-01Z-00-DX1.755C4693-A9CE-48E7-A76B-DAECEE850D35.svs,0,633.0,0 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+organ: kidney +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_KIRC/BAP1_mutation/task.csv b/tasks/TCGA_KIRC/BAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..08158a5e502d134ca108d7f0375a296e8db52082 --- /dev/null +++ b/tasks/TCGA_KIRC/BAP1_mutation/task.csv @@ -0,0 +1,520 @@ +case_id,filename,label +503a9c0b-64b8-41b9-a44f-9cbff9cefbad,TCGA-AK-3430-01Z-00-DX1.71713A92-C495-414B-B3FD-1CF5D0D9F105.svs,0 +4467ae73-499a-4af0-8431-e059d6ed21a5,TCGA-CJ-6027-01Z-00-DX1.ADA07C08-C97A-4F41-9467-8F4F49F96EDA.svs,0 +fcecafa8-8b8b-4ae6-81bc-73acf05b211a,TCGA-CZ-4856-01Z-00-DX1.866ea89f-a487-4380-af9b-bec919edeefb.svs,0 +6ab00314-5228-43ba-9880-9d5177b64c61,TCGA-CJ-6030-01Z-00-DX1.A762AB76-62E5-4680-9912-8B6D7FC48FF9.svs,0 +4cfe4f31-f62c-423a-8b9f-17f455b15313,TCGA-BP-4760-01Z-00-DX1.0a49c368-739d-42f8-a1cc-5a35ee70a810.svs,0 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+task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KIRC/DSS/task.csv b/tasks/TCGA_KIRC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9a6ba31fc809de4656530404a9489e5dd131653c --- /dev/null +++ b/tasks/TCGA_KIRC/DSS/task.csv @@ -0,0 +1,511 @@ +case_id,filename,DSS_event,DSS_days,DSS +4467ae73-499a-4af0-8431-e059d6ed21a5,TCGA-CJ-6027-01Z-00-DX1.ADA07C08-C97A-4F41-9467-8F4F49F96EDA.svs,0,3615.0,3 +fcecafa8-8b8b-4ae6-81bc-73acf05b211a,TCGA-CZ-4856-01Z-00-DX1.866ea89f-a487-4380-af9b-bec919edeefb.svs,0,18.0,0 +6ab00314-5228-43ba-9880-9d5177b64c61,TCGA-CJ-6030-01Z-00-DX1.A762AB76-62E5-4680-9912-8B6D7FC48FF9.svs,0,2299.0,3 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4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KIRC/PFI/task.csv b/tasks/TCGA_KIRC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..cd9e95e5ce5c11d03e69cbf45469b6e34d0c8f05 --- /dev/null +++ b/tasks/TCGA_KIRC/PFI/task.csv @@ -0,0 +1,518 @@ +case_id,filename,PFI_event,PFI_days,PFI +503a9c0b-64b8-41b9-a44f-9cbff9cefbad,TCGA-AK-3430-01Z-00-DX1.71713A92-C495-414B-B3FD-1CF5D0D9F105.svs,0,480.0,1 +4467ae73-499a-4af0-8431-e059d6ed21a5,TCGA-CJ-6027-01Z-00-DX1.ADA07C08-C97A-4F41-9467-8F4F49F96EDA.svs,0,3615.0,3 +fcecafa8-8b8b-4ae6-81bc-73acf05b211a,TCGA-CZ-4856-01Z-00-DX1.866ea89f-a487-4380-af9b-bec919edeefb.svs,0,18.0,0 +6ab00314-5228-43ba-9880-9d5177b64c61,TCGA-CJ-6030-01Z-00-DX1.A762AB76-62E5-4680-9912-8B6D7FC48FF9.svs,0,2299.0,3 +4cfe4f31-f62c-423a-8b9f-17f455b15313,TCGA-BP-4760-01Z-00-DX1.0a49c368-739d-42f8-a1cc-5a35ee70a810.svs,1,1457.0,6 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b/tasks/TCGA_KIRC/SETD2_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..62b72ef7e3159f6e30e0d8841a7e8cf76c1b72a8 --- /dev/null +++ b/tasks/TCGA_KIRC/SETD2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: kidney +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_KIRC/SETD2_mutation/task.csv b/tasks/TCGA_KIRC/SETD2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ce6bdad17c4720c1d935784d184cd9a729a5b019 --- /dev/null +++ b/tasks/TCGA_KIRC/SETD2_mutation/task.csv @@ -0,0 +1,520 @@ +case_id,filename,label +503a9c0b-64b8-41b9-a44f-9cbff9cefbad,TCGA-AK-3430-01Z-00-DX1.71713A92-C495-414B-B3FD-1CF5D0D9F105.svs,0 +4467ae73-499a-4af0-8431-e059d6ed21a5,TCGA-CJ-6027-01Z-00-DX1.ADA07C08-C97A-4F41-9467-8F4F49F96EDA.svs,0 +fcecafa8-8b8b-4ae6-81bc-73acf05b211a,TCGA-CZ-4856-01Z-00-DX1.866ea89f-a487-4380-af9b-bec919edeefb.svs,0 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G2 + 2: G3 + 3: G4 diff --git a/tasks/TCGA_KIRC/tumor_grade/task.csv b/tasks/TCGA_KIRC/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..11429d24502f74daf43a40f1523924a9d6cbd33a --- /dev/null +++ b/tasks/TCGA_KIRC/tumor_grade/task.csv @@ -0,0 +1,511 @@ +case_id,filename,label +503a9c0b-64b8-41b9-a44f-9cbff9cefbad,TCGA-AK-3430-01Z-00-DX1.71713A92-C495-414B-B3FD-1CF5D0D9F105.svs,2 +4467ae73-499a-4af0-8431-e059d6ed21a5,TCGA-CJ-6027-01Z-00-DX1.ADA07C08-C97A-4F41-9467-8F4F49F96EDA.svs,3 +fcecafa8-8b8b-4ae6-81bc-73acf05b211a,TCGA-CZ-4856-01Z-00-DX1.866ea89f-a487-4380-af9b-bec919edeefb.svs,1 +6ab00314-5228-43ba-9880-9d5177b64c61,TCGA-CJ-6030-01Z-00-DX1.A762AB76-62E5-4680-9912-8B6D7FC48FF9.svs,2 +4cfe4f31-f62c-423a-8b9f-17f455b15313,TCGA-BP-4760-01Z-00-DX1.0a49c368-739d-42f8-a1cc-5a35ee70a810.svs,1 +db058eb4-9c5e-4226-92d1-de24aea83630,TCGA-B0-5693-01Z-00-DX1.357ab4bd-c410-4843-96a2-8b6c5b56d9d6.svs,1 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b/tasks/TCGA_KIRP/BAP1_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..62b72ef7e3159f6e30e0d8841a7e8cf76c1b72a8 --- /dev/null +++ b/tasks/TCGA_KIRP/BAP1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: kidney +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_KIRP/BAP1_mutation/task.csv b/tasks/TCGA_KIRP/BAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..67c455230277991d5a450d069894100445f8f340 --- /dev/null +++ b/tasks/TCGA_KIRP/BAP1_mutation/task.csv @@ -0,0 +1,300 @@ +case_id,filename,label +b06cdf61-61c9-4035-a55d-1ef21dc21069,TCGA-AL-A5DJ-01Z-00-DX1.AF15A60D-67BF-47AB-8AE3-CCBE6DDAF86D.svs,0 +8fc6b46b-1c60-40b1-8924-0c2c9307c6e0,TCGA-G7-6793-01Z-00-DX1.d5180ed3-4fbe-4254-9d5b-530aac5f3bca.svs,0 +04ca8ab0-c10c-4300-8244-108ebc304410,TCGA-Y8-A8S1-01Z-00-DX1.070EF07D-6A9B-4E32-9851-3B08A628D879.svs,0 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0000000000000000000000000000000000000000..e33fe986305bf8567e79c55872637d32f33208e6 --- /dev/null +++ b/tasks/TCGA_KIRP/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: kidney +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KIRP/DFI/task.csv b/tasks/TCGA_KIRP/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..dbacbddfbd8cc9c9b469da94338d879fe644d18d --- /dev/null +++ b/tasks/TCGA_KIRP/DFI/task.csv @@ -0,0 +1,199 @@ +case_id,filename,DFI_event,DFI_days,DFI +04ca8ab0-c10c-4300-8244-108ebc304410,TCGA-Y8-A8S1-01Z-00-DX1.070EF07D-6A9B-4E32-9851-3B08A628D879.svs,0,404.0,0 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+ 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_KIRP/DSS/task.csv b/tasks/TCGA_KIRP/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b97b37f8d7f073bfa4fa2a7bbbe00a263ed7f8f3 --- /dev/null +++ b/tasks/TCGA_KIRP/DSS/task.csv @@ -0,0 +1,295 @@ +case_id,filename,DSS_event,DSS_days,DSS +b06cdf61-61c9-4035-a55d-1ef21dc21069,TCGA-AL-A5DJ-01Z-00-DX1.AF15A60D-67BF-47AB-8AE3-CCBE6DDAF86D.svs,1,1498.0,7 +8fc6b46b-1c60-40b1-8924-0c2c9307c6e0,TCGA-G7-6793-01Z-00-DX1.d5180ed3-4fbe-4254-9d5b-530aac5f3bca.svs,1,336.0,4 +04ca8ab0-c10c-4300-8244-108ebc304410,TCGA-Y8-A8S1-01Z-00-DX1.070EF07D-6A9B-4E32-9851-3B08A628D879.svs,0,404.0,1 +beac52b4-ab6b-4f20-aeff-8c15990aa710,TCGA-B9-7268-01Z-00-DX1.6F3C101D-49F1-43B4-AFEB-C5F55054E27D.svs,0,671.0,1 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b/tasks/TCGA_KIRP/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..15971b43f70a8c1d191931e31d126868bd39beac --- /dev/null +++ b/tasks/TCGA_KIRP/PFI/task.csv @@ -0,0 +1,298 @@ +case_id,filename,PFI_event,PFI_days,PFI +b06cdf61-61c9-4035-a55d-1ef21dc21069,TCGA-AL-A5DJ-01Z-00-DX1.AF15A60D-67BF-47AB-8AE3-CCBE6DDAF86D.svs,1,1498.0,7 +8fc6b46b-1c60-40b1-8924-0c2c9307c6e0,TCGA-G7-6793-01Z-00-DX1.d5180ed3-4fbe-4254-9d5b-530aac5f3bca.svs,1,336.0,4 +04ca8ab0-c10c-4300-8244-108ebc304410,TCGA-Y8-A8S1-01Z-00-DX1.070EF07D-6A9B-4E32-9851-3B08A628D879.svs,0,404.0,1 +beac52b4-ab6b-4f20-aeff-8c15990aa710,TCGA-B9-7268-01Z-00-DX1.6F3C101D-49F1-43B4-AFEB-C5F55054E27D.svs,0,671.0,1 +d66c9261-6c0c-44b0-92fa-a43757f34cb2,TCGA-2Z-A9J7-01Z-00-DX1.9DB458BA-8AB0-4ECF-A3F9-5851A7A59759.svs,1,96.0,4 +d48bec14-6466-4924-a9e1-a37e31fcf83c,TCGA-P4-A5E7-01Z-00-DX1.4957D156-3E76-44C7-ADBC-3F02933D9F51.svs,0,2649.0,3 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+task_type: survival +organ: brain +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LGG/DFI/task.csv b/tasks/TCGA_LGG/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6088b072ab495540561d5d9f6eca9f1921a43ff1 --- /dev/null +++ b/tasks/TCGA_LGG/DFI/task.csv @@ -0,0 +1,270 @@ +case_id,filename,DFI_event,DFI_days,DFI +d05079f2-9883-46e6-ad06-9e561f08d819,TCGA-DB-5277-01Z-00-DX1.635F8997-B57B-402D-8889-BE84CA858B16.svs,1,1156.0,7 +da13446a-c4dc-4d02-80c8-410273925ac4,TCGA-FG-A6IZ-01Z-00-DX1.4E27D4BA-5E6C-4E51-97F4-5EE6148A4F29.svs,0,457.0,1 +dbfaccb0-e8c0-48e8-9aef-570267574822,TCGA-HT-7473-01Z-00-DX8.436FDFB3-6908-48E1-A373-8C50314E09E5.svs,0,503.0,1 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b/tasks/TCGA_LGG/IDH2_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..20df423f4e8b432db4444c1c20bf10f30fd0ba72 --- /dev/null +++ b/tasks/TCGA_LGG/IDH2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: brain +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LGG/IDH2_mutation/task.csv b/tasks/TCGA_LGG/IDH2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..f56e6f638a953a60b2f47f693c88c2f8e9406552 --- /dev/null +++ b/tasks/TCGA_LGG/IDH2_mutation/task.csv @@ -0,0 +1,845 @@ +case_id,filename,label +d05079f2-9883-46e6-ad06-9e561f08d819,TCGA-DB-5277-01Z-00-DX1.635F8997-B57B-402D-8889-BE84CA858B16.svs,0 +da13446a-c4dc-4d02-80c8-410273925ac4,TCGA-FG-A6IZ-01Z-00-DX1.4E27D4BA-5E6C-4E51-97F4-5EE6148A4F29.svs,0 +d3d8987d-0a54-45f8-b9c9-17ec89fa864e,TCGA-DU-A7TB-01Z-00-DX1.D81A49F7-D5B5-42AC-BB15-24A8DBF3E2F3.svs,0 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0000000000000000000000000000000000000000..3a5e17d30444e91c115b54fc079d53ff0776065c --- /dev/null +++ b/tasks/TCGA_LGG/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: brain +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LGG/OS/task.csv b/tasks/TCGA_LGG/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..14cc6fae269ee903bff069c2f58a0245849b6f80 --- /dev/null +++ b/tasks/TCGA_LGG/OS/task.csv @@ -0,0 +1,843 @@ +case_id,filename,OS_event,OS_days,OS +d05079f2-9883-46e6-ad06-9e561f08d819,TCGA-DB-5277-01Z-00-DX1.635F8997-B57B-402D-8889-BE84CA858B16.svs,1,1547.0,7 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-0,0 +1,6 @@ +task_type: classification +organ: brain +sample_col: case_id +label_dict: + 0: G2 + 1: G3 diff --git a/tasks/TCGA_LGG/tumor_grade/task.csv b/tasks/TCGA_LGG/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4baa38279cc2ac53cec67b6e4e1999e6b34bbabc --- /dev/null +++ b/tasks/TCGA_LGG/tumor_grade/task.csv @@ -0,0 +1,843 @@ +case_id,filename,label +d05079f2-9883-46e6-ad06-9e561f08d819,TCGA-DB-5277-01Z-00-DX1.635F8997-B57B-402D-8889-BE84CA858B16.svs,1 +da13446a-c4dc-4d02-80c8-410273925ac4,TCGA-FG-A6IZ-01Z-00-DX1.4E27D4BA-5E6C-4E51-97F4-5EE6148A4F29.svs,0 +d3d8987d-0a54-45f8-b9c9-17ec89fa864e,TCGA-DU-A7TB-01Z-00-DX1.D81A49F7-D5B5-42AC-BB15-24A8DBF3E2F3.svs,0 +d43581a5-3d49-4263-862b-ca99d15ec03d,TCGA-HT-A616-01Z-00-DX1.5B0373D5-0979-4C1B-B9CA-08DFDCC9057B.svs,0 +dbfaccb0-e8c0-48e8-9aef-570267574822,TCGA-HT-7473-01Z-00-DX8.436FDFB3-6908-48E1-A373-8C50314E09E5.svs,0 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b/tasks/TCGA_LIHC/BAP1_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..323deab18d407177882f8ff12e6e069e1bf539e3 --- /dev/null +++ b/tasks/TCGA_LIHC/BAP1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: liver and intrahepatic bile ducts +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LIHC/BAP1_mutation/task.csv b/tasks/TCGA_LIHC/BAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..c2da4030c8870a4434a0c52ad32635a4a42dfd86 --- /dev/null +++ b/tasks/TCGA_LIHC/BAP1_mutation/task.csv @@ -0,0 +1,380 @@ +case_id,filename,label +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,0 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,0 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,0 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b/tasks/TCGA_LIHC/CTNNB1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: liver and intrahepatic bile ducts +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LIHC/CTNNB1_mutation/task.csv b/tasks/TCGA_LIHC/CTNNB1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6796c61bb83bf5b39a650847010b774b415e9df9 --- /dev/null +++ b/tasks/TCGA_LIHC/CTNNB1_mutation/task.csv @@ -0,0 +1,380 @@ +case_id,filename,label +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,0 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,0 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,0 +17833039-0d7e-47f0-90e6-8cabae94c124,TCGA-FV-A3R2-01Z-00-DX1.B9E286ED-B4A3-44E7-B11F-F2B763083FBC.svs,0 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DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LIHC/DFI/task.csv b/tasks/TCGA_LIHC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..90fbfe5d8f01a4fda87581e7dc1b7e3d0d18c8ca --- /dev/null +++ b/tasks/TCGA_LIHC/DFI/task.csv @@ -0,0 +1,327 @@ +case_id,filename,DFI_event,DFI_days,DFI +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,0,588.0,2 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,0,698.0,2 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,0,315.0,1 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a/tasks/TCGA_LIHC/OS/task.csv b/tasks/TCGA_LIHC/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a1c024a803ea09fcdd973e7901c14c12bc388272 --- /dev/null +++ b/tasks/TCGA_LIHC/OS/task.csv @@ -0,0 +1,379 @@ +case_id,filename,OS_event,OS_days,OS +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,0,588.0,1 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,0,698.0,2 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,1,315.0,4 +17833039-0d7e-47f0-90e6-8cabae94c124,TCGA-FV-A3R2-01Z-00-DX1.B9E286ED-B4A3-44E7-B11F-F2B763083FBC.svs,1,194.0,4 +3a2d7482-c246-411e-841f-71d96e353328,TCGA-G3-A3CH-01Z-00-DX1.EA1C12F1-0A52-418D-845E-C99E57D21260.svs,0,780.0,2 +3e1920b3-3bd4-4506-a0cf-567257154bcf,TCGA-2Y-A9GW-01Z-00-DX1.71805205-933D-4D72-A4A2-586DC5490D76.svs,1,1271.0,7 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Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LIHC/PFI/task.csv b/tasks/TCGA_LIHC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6d1332c190c0aac78f7455866ec1115997180989 --- /dev/null +++ b/tasks/TCGA_LIHC/PFI/task.csv @@ -0,0 +1,379 @@ +case_id,filename,PFI_event,PFI_days,PFI +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,0,588.0,2 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,0,698.0,2 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,1,260.0,5 +17833039-0d7e-47f0-90e6-8cabae94c124,TCGA-FV-A3R2-01Z-00-DX1.B9E286ED-B4A3-44E7-B11F-F2B763083FBC.svs,0,194.0,1 +3a2d7482-c246-411e-841f-71d96e353328,TCGA-G3-A3CH-01Z-00-DX1.EA1C12F1-0A52-418D-845E-C99E57D21260.svs,1,116.0,4 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a/tasks/TCGA_LIHC/tumor_grade/task.csv b/tasks/TCGA_LIHC/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a92484c1c99379b300876b164b5bae22787d2bdf --- /dev/null +++ b/tasks/TCGA_LIHC/tumor_grade/task.csv @@ -0,0 +1,375 @@ +case_id,filename,label +26d93d77-ab66-45aa-a162-98d091221afb,TCGA-RC-A7SB-01Z-00-DX1.2F9AD3F0-68C1-443F-9E4C-47DB92302543.svs,1 +22dd3876-1f2c-4ddd-8fae-f5fb820993ba,TCGA-MI-A75G-01Z-00-DX1.DD5C8CC3-D7CF-4DB6-B222-86609387D44C.svs,1 +2c53d48d-e3bc-49f3-bbe0-2eee24252b4c,TCGA-CC-A3MB-01Z-00-DX1.5EF235F5-A3B1-4DBB-9D6E-03A9F7CB203F.svs,0 +3a2d7482-c246-411e-841f-71d96e353328,TCGA-G3-A3CH-01Z-00-DX1.EA1C12F1-0A52-418D-845E-C99E57D21260.svs,1 +3e1920b3-3bd4-4506-a0cf-567257154bcf,TCGA-2Y-A9GW-01Z-00-DX1.71805205-933D-4D72-A4A2-586DC5490D76.svs,1 +4244912d-8527-410c-a084-a56c55eb1f82,TCGA-ZP-A9D4-01Z-00-DX1.306ADF14-E71A-4E44-BF28-F7733A1937EC.svs,0 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0000000000000000000000000000000000000000..3311c2c15e79b2d937f06fe5ca3bbac77351e447 --- /dev/null +++ b/tasks/TCGA_LUAD/ALK_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: bronchus and lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LUAD/ALK_mutation/task.csv b/tasks/TCGA_LUAD/ALK_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..878caec199b582b99952cfb2be05352d5603e43b --- /dev/null +++ b/tasks/TCGA_LUAD/ALK_mutation/task.csv @@ -0,0 +1,542 @@ +case_id,filename,label +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0 +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,0 +a7911bdc-13f1-434a-bfa3-f8ba55d15846,TCGA-55-7574-01Z-00-DX1.09639e6a-d85f-4d84-abbc-0f5a6d679683.svs,0 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+label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LUAD/CDKN2A_mutation/task.csv b/tasks/TCGA_LUAD/CDKN2A_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0a02f0420cf1881a9fd055fd6551fac42ca59fa9 --- /dev/null +++ b/tasks/TCGA_LUAD/CDKN2A_mutation/task.csv @@ -0,0 +1,542 @@ +case_id,filename,label +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0 +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,0 +a7911bdc-13f1-434a-bfa3-f8ba55d15846,TCGA-55-7574-01Z-00-DX1.09639e6a-d85f-4d84-abbc-0f5a6d679683.svs,0 +a815619f-dbba-469f-a1f7-dfbd51cd86c5,TCGA-L9-A50W-01Z-00-DX1.21FAAB58-58EF-4A6A-8F0A-16D9AB9B1056.svs,0 +a816e355-be6f-4d16-b051-b6d86ed8cded,TCGA-86-8278-01Z-00-DX1.6500afef-f0f0-4e7c-a6c0-60da81993641.svs,0 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Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUAD/DFI/task.csv b/tasks/TCGA_LUAD/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..aadd5123eeb8c27eb497f44af33d3dde036d8eea --- /dev/null +++ b/tasks/TCGA_LUAD/DFI/task.csv @@ -0,0 +1,303 @@ +case_id,filename,DFI_event,DFI_days,DFI +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0,664.0,2 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,0,866.0,2 +a7911bdc-13f1-434a-bfa3-f8ba55d15846,TCGA-55-7574-01Z-00-DX1.09639e6a-d85f-4d84-abbc-0f5a6d679683.svs,1,478.0,5 +a815619f-dbba-469f-a1f7-dfbd51cd86c5,TCGA-L9-A50W-01Z-00-DX1.21FAAB58-58EF-4A6A-8F0A-16D9AB9B1056.svs,1,389.0,4 +a816e355-be6f-4d16-b051-b6d86ed8cded,TCGA-86-8278-01Z-00-DX1.6500afef-f0f0-4e7c-a6c0-60da81993641.svs,1,29.0,4 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b/tasks/TCGA_LUAD/EGFR_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..3311c2c15e79b2d937f06fe5ca3bbac77351e447 --- /dev/null +++ b/tasks/TCGA_LUAD/EGFR_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: bronchus and lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LUAD/EGFR_mutation/task.csv b/tasks/TCGA_LUAD/EGFR_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..daa5ab053fb94b2cb8d99d63818092ed6f88f92b --- /dev/null +++ b/tasks/TCGA_LUAD/EGFR_mutation/task.csv @@ -0,0 +1,542 @@ +case_id,filename,label +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0 +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,0 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b/tasks/TCGA_LUAD/KRAS_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: bronchus and lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LUAD/KRAS_mutation/task.csv b/tasks/TCGA_LUAD/KRAS_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..81df957618d4c8b21ee2a70bad1f1afd930ac29a --- /dev/null +++ b/tasks/TCGA_LUAD/KRAS_mutation/task.csv @@ -0,0 +1,542 @@ +case_id,filename,label +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0 +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,1 +a7911bdc-13f1-434a-bfa3-f8ba55d15846,TCGA-55-7574-01Z-00-DX1.09639e6a-d85f-4d84-abbc-0f5a6d679683.svs,0 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OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUAD/OS/task.csv b/tasks/TCGA_LUAD/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a8beb7c6cf7b367884d59bab237c457c2688ad40 --- /dev/null +++ b/tasks/TCGA_LUAD/OS/task.csv @@ -0,0 +1,533 @@ +case_id,filename,OS_event,OS_days,OS +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0,408.0,0 +a5f2576a-d628-47de-a5df-76a4f3105dcc,TCGA-L9-A743-01Z-00-DX1.27ED2955-E8B5-4A3C-ADAA-82568ECCFB83.svs,0,664.0,1 +a65700c2-e58c-4fd4-aeb1-5686b8f4d212,TCGA-64-5815-01Z-00-DX1.1E3600B5-7E83-47BE-AC70-E0C2D623740B.svs,0,866.0,2 +a7911bdc-13f1-434a-bfa3-f8ba55d15846,TCGA-55-7574-01Z-00-DX1.09639e6a-d85f-4d84-abbc-0f5a6d679683.svs,1,995.0,6 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100644 index 0000000000000000000000000000000000000000..a926799b751368c3961465651ce64d6dec7b22e3 --- /dev/null +++ b/tasks/TCGA_LUAD/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: bronchus and lung +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUAD/PFI/task.csv b/tasks/TCGA_LUAD/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9cbf76a2fae65c0f4a02d1b904e3586822b9247d --- /dev/null +++ b/tasks/TCGA_LUAD/PFI/task.csv @@ -0,0 +1,533 @@ +case_id,filename,PFI_event,PFI_days,PFI +a5bd7d50-9c14-49e6-89cf-6bf440c42309,TCGA-69-7979-01Z-00-DX1.c9bc265d-4889-4333-9852-b8b535887f1e.svs,0,408.0,1 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+task_type: survival +organ: bronchus and lung +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUSC/DFI/task.csv b/tasks/TCGA_LUSC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..663ef17206f892c3a37cd0900700b491aa3bff55 --- /dev/null +++ b/tasks/TCGA_LUSC/DFI/task.csv @@ -0,0 +1,322 @@ +case_id,filename,DFI_event,DFI_days,DFI +96e31ca7-b917-4d04-804f-489243f6ee2b,TCGA-77-8156-01Z-00-DX1.9ed8c07d-61f3-4f6b-9c8b-312917c64e04.svs,0,1106.0,2 +9a13a742-ff9a-4432-a7ce-7fcbb753be01,TCGA-85-7698-01Z-00-DX1.bc8a89a7-356e-4913-9632-627774730f48.svs,1,650.0,5 +9d841e6a-b292-45be-8a7a-50d54606592b,TCGA-21-5786-01Z-00-DX1.928370C0-0BD4-43D6-94EB-FE7CB172265E.svs,1,817.0,6 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case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUSC/DSS/task.csv b/tasks/TCGA_LUSC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..712e7d813496bb5fb2d0e9804348f2712b40723d --- /dev/null +++ b/tasks/TCGA_LUSC/DSS/task.csv @@ -0,0 +1,447 @@ +case_id,filename,DSS_event,DSS_days,DSS +9665b02f-970d-41fc-a07c-f01c8e3fe5a8,TCGA-68-7757-01Z-00-DX1.4eece254-a119-436a-af3c-fad8e8b7f74b.svs,0,211.0,0 +96e31ca7-b917-4d04-804f-489243f6ee2b,TCGA-77-8156-01Z-00-DX1.9ed8c07d-61f3-4f6b-9c8b-312917c64e04.svs,0,1106.0,2 +9a13a742-ff9a-4432-a7ce-7fcbb753be01,TCGA-85-7698-01Z-00-DX1.bc8a89a7-356e-4913-9632-627774730f48.svs,0,952.0,2 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b/tasks/TCGA_LUSC/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0ec298ccca1f272cf4c8f4fe86bc666bad3d61a3 --- /dev/null +++ b/tasks/TCGA_LUSC/OS/task.csv @@ -0,0 +1,507 @@ +case_id,filename,OS_event,OS_days,OS +9665b02f-970d-41fc-a07c-f01c8e3fe5a8,TCGA-68-7757-01Z-00-DX1.4eece254-a119-436a-af3c-fad8e8b7f74b.svs,0,211.0,0 +96e31ca7-b917-4d04-804f-489243f6ee2b,TCGA-77-8156-01Z-00-DX1.9ed8c07d-61f3-4f6b-9c8b-312917c64e04.svs,0,1106.0,2 +9a13a742-ff9a-4432-a7ce-7fcbb753be01,TCGA-85-7698-01Z-00-DX1.bc8a89a7-356e-4913-9632-627774730f48.svs,0,952.0,2 +9d841e6a-b292-45be-8a7a-50d54606592b,TCGA-21-5786-01Z-00-DX1.928370C0-0BD4-43D6-94EB-FE7CB172265E.svs,0,1032.0,2 +9eb34055-0e33-4b3a-827b-d7108b5b0629,TCGA-43-7656-01Z-00-DX1.6076ce10-fcb2-4f29-b3f3-c3f5649dc469.svs,0,596.0,1 +8bb3ed57-6e48-4c90-bcf2-baf9a843398f,TCGA-56-7730-01Z-00-DX1.6f127663-c517-4b5d-99a6-a3cd314304b1.svs,1,198.0,4 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6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_LUSC/PFI/task.csv b/tasks/TCGA_LUSC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4dbf9fb7c84f53be9d0febc3e3695bb54bdf309a --- /dev/null +++ b/tasks/TCGA_LUSC/PFI/task.csv @@ -0,0 +1,508 @@ +case_id,filename,PFI_event,PFI_days,PFI +9665b02f-970d-41fc-a07c-f01c8e3fe5a8,TCGA-68-7757-01Z-00-DX1.4eece254-a119-436a-af3c-fad8e8b7f74b.svs,0,211.0,0 +96e31ca7-b917-4d04-804f-489243f6ee2b,TCGA-77-8156-01Z-00-DX1.9ed8c07d-61f3-4f6b-9c8b-312917c64e04.svs,0,1106.0,2 +9a13a742-ff9a-4432-a7ce-7fcbb753be01,TCGA-85-7698-01Z-00-DX1.bc8a89a7-356e-4913-9632-627774730f48.svs,1,650.0,6 +9d841e6a-b292-45be-8a7a-50d54606592b,TCGA-21-5786-01Z-00-DX1.928370C0-0BD4-43D6-94EB-FE7CB172265E.svs,1,817.0,6 +9eb34055-0e33-4b3a-827b-d7108b5b0629,TCGA-43-7656-01Z-00-DX1.6076ce10-fcb2-4f29-b3f3-c3f5649dc469.svs,0,596.0,2 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bronchus and lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_LUSC/RB1_mutation/task.csv b/tasks/TCGA_LUSC/RB1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..df7b5b4b903d3d0456ee70ab2f398cb225b7a4d5 --- /dev/null +++ b/tasks/TCGA_LUSC/RB1_mutation/task.csv @@ -0,0 +1,513 @@ +case_id,filename,label +9665b02f-970d-41fc-a07c-f01c8e3fe5a8,TCGA-68-7757-01Z-00-DX1.4eece254-a119-436a-af3c-fad8e8b7f74b.svs,0 +96e31ca7-b917-4d04-804f-489243f6ee2b,TCGA-77-8156-01Z-00-DX1.9ed8c07d-61f3-4f6b-9c8b-312917c64e04.svs,0 +9a13a742-ff9a-4432-a7ce-7fcbb753be01,TCGA-85-7698-01Z-00-DX1.bc8a89a7-356e-4913-9632-627774730f48.svs,0 +9d841e6a-b292-45be-8a7a-50d54606592b,TCGA-21-5786-01Z-00-DX1.928370C0-0BD4-43D6-94EB-FE7CB172265E.svs,0 +9eb34055-0e33-4b3a-827b-d7108b5b0629,TCGA-43-7656-01Z-00-DX1.6076ce10-fcb2-4f29-b3f3-c3f5649dc469.svs,0 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+time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_MESO/DSS/task.csv b/tasks/TCGA_MESO/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4c78a843d2e7bdc4eee9d5f19d1d87fb48dded2a --- /dev/null +++ b/tasks/TCGA_MESO/DSS/task.csv @@ -0,0 +1,71 @@ +case_id,filename,DSS_event,DSS_days,DSS +1c848577-c3a4-4830-abfa-549992172396,TCGA-3H-AB3S-01Z-00-DX3.BC2DBEEA-1C7C-41AD-97D4-92FBF0483200.svs,1,385.0,5 +1c848577-c3a4-4830-abfa-549992172396,TCGA-3H-AB3S-01Z-00-DX2.943D90C4-82AC-4ECE-982A-E4DFF72B03BB.svs,1,385.0,5 +0c7b4b9c-d497-41fc-a2b9-014bb5e07985,TCGA-SC-AA5Z-01Z-00-DX1.78B57359-29FE-418E-B5AB-750CF6687579.svs,0,664.0,2 +2d2d8421-18a7-4822-ba37-69fbf48da225,TCGA-SC-A6LN-01Z-00-DX1.379BF588-5A65-4BF8-84CF-5136085D8A47.svs,0,414.0,1 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b/tasks/TCGA_MESO/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: bronchus and lung +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_MESO/PFI/task.csv b/tasks/TCGA_MESO/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..cb9776a65f8f82393d03e9debbc1a0e5e5474247 --- /dev/null +++ b/tasks/TCGA_MESO/PFI/task.csv @@ -0,0 +1,86 @@ +case_id,filename,PFI_event,PFI_days,PFI +1c848577-c3a4-4830-abfa-549992172396,TCGA-3H-AB3S-01Z-00-DX3.BC2DBEEA-1C7C-41AD-97D4-92FBF0483200.svs,1,186.0,5 +1c848577-c3a4-4830-abfa-549992172396,TCGA-3H-AB3S-01Z-00-DX2.943D90C4-82AC-4ECE-982A-E4DFF72B03BB.svs,1,186.0,5 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+3d8b4046-822a-4a00-b79e-393bd3f5f5b5,TCGA-3U-A98H-01Z-00-DX1.CE8066E4-A543-445D-84D9-819C8C0922CB.svs,1,798.0,7 +7a92421e-4860-41c7-afd2-fa715357f023,TCGA-TS-A8AS-01Z-00-DX1.4278D910-79C3-44AB-A2A0-5B7CE54D64CB.svs,0,795.0,3 +d3a6accc-5c45-4e70-baf5-2188af53e0db,TCGA-MQ-A6BQ-01Z-00-DX1.72BF21E4-17D6-436B-AAD9-7960342894F4.svs,0,2359.0,3 diff --git a/tasks/TCGA_OV/DFI/config.yaml b/tasks/TCGA_OV/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..0138eef4f7b4176d0e2ba872a78da91f38c4cc06 --- /dev/null +++ b/tasks/TCGA_OV/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: retroperitoneum and peritoneum +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_OV/DFI/task.csv b/tasks/TCGA_OV/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..49a05adeff6e39658c50bb7e691b7da4145bd296 --- /dev/null +++ b/tasks/TCGA_OV/DFI/task.csv @@ -0,0 +1,41 @@ +case_id,filename,DFI_event,DFI_days,DFI +fdf83fdf-dfbb-4306-9a1b-b4487d18b402,TCGA-23-1120-01Z-00-DX1.59367B12-17F1-41AA-A6FB-8D940365176A.svs,0,130.0,0 +ef57bc45-858f-4d4e-8407-b7eadfa43be5,TCGA-23-2077-01Z-00-DX1.9EB664FA-CC13-4A49-89BA-8A4573CE48F1.svs,1,1232.0,7 +9e18238f-ae85-4b75-ae87-d92da9731a40,TCGA-23-1023-01Z-00-DX1.0C96E118-A4D9-4A9A-B95E-C0AA114D2483.svs,1,490.0,5 +eef62876-7d17-496a-8971-2c7008d77014,TCGA-42-2587-01Z-00-DX1.7a887a16-a8bc-403b-ab71-a8b43e5613fc.svs,0,722.0,2 +9bdbaccf-b43b-4ec3-8b9b-dff65215eb00,TCGA-25-1878-01Z-00-DX1.618F8128-41C4-411B-9B26-B490E066B30D.svs,1,971.0,7 +7ebc776e-bde1-4563-adb1-8bd441872733,TCGA-59-A5PD-01Z-00-DX1.0A4D38A2-7B15-4550-B00C-4276485A9613.svs,1,145.0,4 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+260723bf-9620-450d-bf31-f3a45543f9db,TCGA-OY-A56P-01Z-00-DX1.59CA76B0-5613-48CB-ACE7-6F808B8A9423.svs,1,794.0,6 +0750ebcc-348a-4ea9-9dd2-6274d5e6eeaa,TCGA-42-2591-01Z-00-DX1.ea85e14f-5f0a-4ed0-9afe-025bb95fca40.svs,0,1240.0,3 diff --git a/tasks/TCGA_OV/DSS/config.yaml b/tasks/TCGA_OV/DSS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..2765a01356962dbd5a58d197bb29e391404840b6 --- /dev/null +++ b/tasks/TCGA_OV/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: retroperitoneum and peritoneum +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_OV/DSS/task.csv b/tasks/TCGA_OV/DSS/task.csv new file mode 100644 index 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case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_OV/OS/task.csv b/tasks/TCGA_OV/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6e87b0471b0f85b4c2e46dc8bed267c245ff97af --- /dev/null +++ b/tasks/TCGA_OV/OS/task.csv @@ -0,0 +1,107 @@ +case_id,filename,OS_event,OS_days,OS +fdd4adb8-9295-480a-9352-305b5eb51187,TCGA-25-2408-01Z-00-DX1.760F6B8D-A61E-4C87-B90D-82E1AF56C204.svs,1,943.0,6 +fdf83fdf-dfbb-4306-9a1b-b4487d18b402,TCGA-23-1120-01Z-00-DX1.59367B12-17F1-41AA-A6FB-8D940365176A.svs,0,130.0,0 +ef57bc45-858f-4d4e-8407-b7eadfa43be5,TCGA-23-2077-01Z-00-DX1.9EB664FA-CC13-4A49-89BA-8A4573CE48F1.svs,0,3525.0,3 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b/tasks/TCGA_OV/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: retroperitoneum and peritoneum +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_OV/PFI/task.csv b/tasks/TCGA_OV/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0cd67340d3a4bbf1947bf08748a6b60278fefc7d --- /dev/null +++ b/tasks/TCGA_OV/PFI/task.csv @@ -0,0 +1,107 @@ +case_id,filename,PFI_event,PFI_days,PFI +fdd4adb8-9295-480a-9352-305b5eb51187,TCGA-25-2408-01Z-00-DX1.760F6B8D-A61E-4C87-B90D-82E1AF56C204.svs,1,334.0,5 +fdf83fdf-dfbb-4306-9a1b-b4487d18b402,TCGA-23-1120-01Z-00-DX1.59367B12-17F1-41AA-A6FB-8D940365176A.svs,0,130.0,0 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b/tasks/TCGA_PAAD/CDKN2A_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..cb4110a8871aac1ac5dce05a1b64c8f88c833fc0 --- /dev/null +++ b/tasks/TCGA_PAAD/CDKN2A_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: pancreas +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_PAAD/CDKN2A_mutation/task.csv b/tasks/TCGA_PAAD/CDKN2A_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..de332c6425cc4bfe4b55da027d3479e50fe44e47 --- /dev/null +++ b/tasks/TCGA_PAAD/CDKN2A_mutation/task.csv @@ -0,0 +1,210 @@ +case_id,filename,label +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,0 +e4babd46-005a-4af3-8041-131648d9c2c6,TCGA-F2-7276-01Z-00-DX1.A2BB6B97-402F-4452-BFCF-0388B01EFBE5.svs,0 +459028fd-0cd8-4e6d-a668-71fd60bd0a37,TCGA-HZ-8637-01Z-00-DX1.5943021F-C94B-4CED-B45F-7A288F7188E0.svs,0 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0000000000000000000000000000000000000000..18c2c092c5977a6f08f1b3e82b5ebe97236c8ff3 --- /dev/null +++ b/tasks/TCGA_PAAD/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: pancreas +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PAAD/DFI/task.csv b/tasks/TCGA_PAAD/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..34e2b9b7a00a34ed70ca41e30c8ed9928c084c8d --- /dev/null +++ b/tasks/TCGA_PAAD/DFI/task.csv @@ -0,0 +1,73 @@ +case_id,filename,DFI_event,DFI_days,DFI +459028fd-0cd8-4e6d-a668-71fd60bd0a37,TCGA-HZ-8637-01Z-00-DX1.5943021F-C94B-4CED-B45F-7A288F7188E0.svs,0,517.0,2 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b/tasks/TCGA_PAAD/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: pancreas +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PAAD/DSS/task.csv b/tasks/TCGA_PAAD/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..894b1271a47c290771e3e8185d1722d04dd13b5f --- /dev/null +++ b/tasks/TCGA_PAAD/DSS/task.csv @@ -0,0 +1,203 @@ +case_id,filename,DSS_event,DSS_days,DSS +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,0,476.0,2 +e4babd46-005a-4af3-8041-131648d9c2c6,TCGA-F2-7276-01Z-00-DX1.A2BB6B97-402F-4452-BFCF-0388B01EFBE5.svs,1,216.0,4 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100644 index 0000000000000000000000000000000000000000..87477464465c4a30e57e5598097193fcb2aa3503 --- /dev/null +++ b/tasks/TCGA_PAAD/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: pancreas +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PAAD/OS/task.csv b/tasks/TCGA_PAAD/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..f8af848c2097310cb04f1d6385deb5b1bba92066 --- /dev/null +++ b/tasks/TCGA_PAAD/OS/task.csv @@ -0,0 +1,210 @@ +case_id,filename,OS_event,OS_days,OS +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,1,476.0,6 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100644 index 0000000000000000000000000000000000000000..610b0fa7fe6d2a424d4c68ae635f7dcffaebbbdb --- /dev/null +++ b/tasks/TCGA_PAAD/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: pancreas +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PAAD/PFI/task.csv b/tasks/TCGA_PAAD/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6e198dc4bb8e91fbb4874a1753f5cd0c04eb0e17 --- /dev/null +++ b/tasks/TCGA_PAAD/PFI/task.csv @@ -0,0 +1,210 @@ +case_id,filename,PFI_event,PFI_days,PFI +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,1,476.0,6 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b/tasks/TCGA_PAAD/SMAD4_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..cb4110a8871aac1ac5dce05a1b64c8f88c833fc0 --- /dev/null +++ b/tasks/TCGA_PAAD/SMAD4_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: pancreas +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_PAAD/SMAD4_mutation/task.csv b/tasks/TCGA_PAAD/SMAD4_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..beec771619b7b84f108e220e4f4d72aa579d8378 --- /dev/null +++ b/tasks/TCGA_PAAD/SMAD4_mutation/task.csv @@ -0,0 +1,210 @@ +case_id,filename,label +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,0 +e4babd46-005a-4af3-8041-131648d9c2c6,TCGA-F2-7276-01Z-00-DX1.A2BB6B97-402F-4452-BFCF-0388B01EFBE5.svs,0 +459028fd-0cd8-4e6d-a668-71fd60bd0a37,TCGA-HZ-8637-01Z-00-DX1.5943021F-C94B-4CED-B45F-7A288F7188E0.svs,0 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0000000000000000000000000000000000000000..5c7ffc7c981f583b4774d14cc9113efd0c8738ba --- /dev/null +++ b/tasks/TCGA_PAAD/tumor_grade/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: pancreas +sample_col: case_id +label_dict: + 0: G1 + 1: G2 + 2: G3 diff --git a/tasks/TCGA_PAAD/tumor_grade/task.csv b/tasks/TCGA_PAAD/tumor_grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..63a8b6631d727bf87aec9ca5338066bb618b3f3b --- /dev/null +++ b/tasks/TCGA_PAAD/tumor_grade/task.csv @@ -0,0 +1,205 @@ +case_id,filename,label +65e5bf5f-f22a-4ec2-8839-aeda37212b98,TCGA-IB-7654-01Z-00-DX1.B74FEDC0-BC74-40B8-B5E6-710188367783.svs,1 +e4babd46-005a-4af3-8041-131648d9c2c6,TCGA-F2-7276-01Z-00-DX1.A2BB6B97-402F-4452-BFCF-0388B01EFBE5.svs,0 +459028fd-0cd8-4e6d-a668-71fd60bd0a37,TCGA-HZ-8637-01Z-00-DX1.5943021F-C94B-4CED-B45F-7A288F7188E0.svs,2 +1fe937f7-b4e5-4cf6-be9b-215a012533c6,TCGA-HZ-7920-01Z-00-DX1.1f7198f7-048d-4552-af8e-99dd76b8ba7b.svs,1 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0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PCPG/OS/task.csv b/tasks/TCGA_PCPG/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..e3bcf68c822ea63e9c54b1f58f6d526a3fb7bc16 --- /dev/null +++ b/tasks/TCGA_PCPG/OS/task.csv @@ -0,0 +1,197 @@ +case_id,filename,OS_event,OS_days,OS +13b41b15-a785-4ab7-b864-ffff6d35dd45,TCGA-QR-A70H-01Z-00-DX1.EA414541-2494-450F-8550-2F43525C79A6.svs,0,816.0,2 +14576f4d-deea-4111-9047-513bbc69a802,TCGA-S7-A7WR-01Z-00-DX2.4E15EF72-105A-43FE-ABE0-08861A44DBC0.svs,0,1238.0,2 +1a1cf490-8bd4-4a99-bf3a-34f06435de86,TCGA-RM-A68W-01Z-00-DX1.4E62E4F4-415C-46EB-A6C8-45BA14E82708.svs,0,28.0,0 +1a2e36dd-3e3b-493c-a075-4ca3acfe2207,TCGA-P8-A5KD-01Z-00-DX1.FEB22367-BF64-4E55-A826-1116AC183DBD.svs,0,123.0,0 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100644 index 0000000000000000000000000000000000000000..1c69c9c12381184f6099de9619a2a4c4ad13a06b --- /dev/null +++ b/tasks/TCGA_PCPG/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: adrenal gland +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PCPG/PFI/task.csv b/tasks/TCGA_PCPG/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..dd214143a6dc0d48ba53cbcd195fbbb4bb9485df --- /dev/null +++ b/tasks/TCGA_PCPG/PFI/task.csv @@ -0,0 +1,197 @@ +case_id,filename,PFI_event,PFI_days,PFI +13b41b15-a785-4ab7-b864-ffff6d35dd45,TCGA-QR-A70H-01Z-00-DX1.EA414541-2494-450F-8550-2F43525C79A6.svs,0,816.0,2 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b/tasks/TCGA_PRAD/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..fa6d3f225a9edaaabff7ef933c040c5e6e9d61d2 --- /dev/null +++ b/tasks/TCGA_PRAD/DFI/task.csv @@ -0,0 +1,304 @@ +case_id,filename,DFI_event,DFI_days,DFI +b8fbfe87-e92c-4d54-a620-17b2dcde6d53,TCGA-G9-6498-01Z-00-DX1.B89E5C96-DEB5-4ABE-9378-99E5869899A7.svs,1,1342.0,6 +f3ec5bf3-97ae-4033-91a6-084a1aa152a4,TCGA-YL-A8SJ-01Z-00-DX3.C3493DD6-8AB2-42D2-A9A3-A155324D2735.svs,1,752.0,5 +f98366df-9616-41c0-a6b8-ec92dca7177a,TCGA-EJ-7797-01Z-00-DX1.589f2810-06b5-4e81-bb8a-da61b9381704.svs,0,983.0,2 +bf428d43-2da6-43fc-bd62-7cbff84e95ec,TCGA-XJ-A83G-01Z-00-DX1.2E6C26F6-4E7E-4CBE-A1E4-C33AA4F25390.svs,0,1461.0,2 +fd50ff41-ec9d-4db1-a673-36ba0ca1eac8,TCGA-HC-7080-01Z-00-DX1.c979be6a-e7c9-4840-8555-6f34499dd2bf.svs,0,1106.0,2 +fca0331b-8096-40e8-b292-d438370c37c9,TCGA-M7-A725-01Z-00-DX1.39C22396-977C-466A-A79B-5B0C26362141.svs,0,573.0,0 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b/tasks/TCGA_PRAD/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: prostate gland +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PRAD/OS/task.csv b/tasks/TCGA_PRAD/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..122b2f22e1948f0a56e1f6f32adea57b1c4f4cfe --- /dev/null +++ b/tasks/TCGA_PRAD/OS/task.csv @@ -0,0 +1,450 @@ +case_id,filename,OS_event,OS_days,OS +b8fbfe87-e92c-4d54-a620-17b2dcde6d53,TCGA-G9-6498-01Z-00-DX1.B89E5C96-DEB5-4ABE-9378-99E5869899A7.svs,0,1952.0,3 +f8b98552-ae2a-4609-9929-7864485b3c51,TCGA-M7-A724-01Z-00-DX1.9A09FA7A-21B8-4F04-BA5D-CA6D81334B0C.svs,0,889.0,1 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b/tasks/TCGA_PRAD/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: prostate gland +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_PRAD/PFI/task.csv b/tasks/TCGA_PRAD/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..2682ec4e525505922051fde2d34294dfb7b63128 --- /dev/null +++ b/tasks/TCGA_PRAD/PFI/task.csv @@ -0,0 +1,450 @@ +case_id,filename,PFI_event,PFI_days,PFI +b8fbfe87-e92c-4d54-a620-17b2dcde6d53,TCGA-G9-6498-01Z-00-DX1.B89E5C96-DEB5-4ABE-9378-99E5869899A7.svs,1,1342.0,6 +f8b98552-ae2a-4609-9929-7864485b3c51,TCGA-M7-A724-01Z-00-DX1.9A09FA7A-21B8-4F04-BA5D-CA6D81334B0C.svs,0,889.0,1 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--- /dev/null +++ b/tasks/TCGA_READ/APC_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_READ/APC_mutation/task.csv b/tasks/TCGA_READ/APC_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..3f6082364fe13b6e897527a12efaef5115d796ee --- /dev/null +++ b/tasks/TCGA_READ/APC_mutation/task.csv @@ -0,0 +1,167 @@ +case_id,filename,label +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0 +d461e83a-7f09-4e4c-ac49-f05766a6051a,TCGA-AG-3891-01Z-00-DX1.82E8836A-91E7-48CA-A7C1-501A00F20298.svs,1 +2faf928d-453a-4d07-b058-b5d4e1d13845,TCGA-AF-2693-01Z-00-DX1.620a9998-65df-4024-b719-f2384b4e7d36.svs,1 +ec2abe34-6566-4c2f-8d06-ade2e858b301,TCGA-AG-3906-01Z-00-DX1.c45a55f5-8fba-41c2-8bda-8fdc702d13dc.svs,1 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b/tasks/TCGA_READ/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..6d8e29d560ba1c07f4b0ab125c724b053b63bda9 --- /dev/null +++ b/tasks/TCGA_READ/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: colon +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_READ/DFI/task.csv b/tasks/TCGA_READ/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..f8e7092311d95bd2fc40ff55701fa00039897bd6 --- /dev/null +++ b/tasks/TCGA_READ/DFI/task.csv @@ -0,0 +1,50 @@ +case_id,filename,DFI_event,DFI_days,DFI +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0,424.0,0 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mode 100644 index 0000000000000000000000000000000000000000..06c9bd5a9c33cad36690b8e15a5198a57e334ecf --- /dev/null +++ b/tasks/TCGA_READ/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: colon +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_READ/DSS/task.csv b/tasks/TCGA_READ/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..33f4c36b653ffaeba6ccd00561648fb09fe8ad4a --- /dev/null +++ b/tasks/TCGA_READ/DSS/task.csv @@ -0,0 +1,161 @@ +case_id,filename,DSS_event,DSS_days,DSS +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0,424.0,1 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b/tasks/TCGA_READ/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: colon +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_READ/OS/task.csv b/tasks/TCGA_READ/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..dff90ad92978ddf53cf8165e2c858d6e2464b276 --- /dev/null +++ b/tasks/TCGA_READ/OS/task.csv @@ -0,0 +1,166 @@ +case_id,filename,OS_event,OS_days,OS +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0,424.0,1 +d461e83a-7f09-4e4c-ac49-f05766a6051a,TCGA-AG-3891-01Z-00-DX1.82E8836A-91E7-48CA-A7C1-501A00F20298.svs,0,548.0,1 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b/tasks/TCGA_READ/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..63783fd814cdac8d527ca571290a0556eede8cb7 --- /dev/null +++ b/tasks/TCGA_READ/PFI/task.csv @@ -0,0 +1,166 @@ +case_id,filename,PFI_event,PFI_days,PFI +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0,424.0,1 +d461e83a-7f09-4e4c-ac49-f05766a6051a,TCGA-AG-3891-01Z-00-DX1.82E8836A-91E7-48CA-A7C1-501A00F20298.svs,0,548.0,1 +2faf928d-453a-4d07-b058-b5d4e1d13845,TCGA-AF-2693-01Z-00-DX1.620a9998-65df-4024-b719-f2384b4e7d36.svs,0,1155.0,3 +ec2abe34-6566-4c2f-8d06-ade2e858b301,TCGA-AG-3906-01Z-00-DX1.c45a55f5-8fba-41c2-8bda-8fdc702d13dc.svs,0,608.0,2 +c69dec57-7a84-481b-bcfe-61a771d0a9d1,TCGA-AG-3602-01Z-00-DX1.23198764-e085-441b-98e4-87fbe1c346f9.svs,0,0.0,0 +e2d395f8-bf13-4fe4-8031-683b0eedd875,TCGA-AG-3890-01Z-00-DX1.662d0fee-4d6e-43c9-b7f4-767e36b22ae6.svs,0,518.0,1 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0000000000000000000000000000000000000000..0ea519a0977c5b78525ba06ca1cf1c0a1c2bbc56 --- /dev/null +++ b/tasks/TCGA_READ/SMAD4_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_READ/SMAD4_mutation/task.csv b/tasks/TCGA_READ/SMAD4_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..3c8f674627c282da7e2c1740a6fe855e75974daa --- /dev/null +++ b/tasks/TCGA_READ/SMAD4_mutation/task.csv @@ -0,0 +1,167 @@ +case_id,filename,label +fb632146-92c7-40d9-acc3-6dc4a2d499be,TCGA-AG-3611-01Z-00-DX1.c22e8af9-4211-46b4-b2aa-40b414025ae1.svs,0 +d461e83a-7f09-4e4c-ac49-f05766a6051a,TCGA-AG-3891-01Z-00-DX1.82E8836A-91E7-48CA-A7C1-501A00F20298.svs,0 +2faf928d-453a-4d07-b058-b5d4e1d13845,TCGA-AF-2693-01Z-00-DX1.620a9998-65df-4024-b719-f2384b4e7d36.svs,0 +ec2abe34-6566-4c2f-8d06-ade2e858b301,TCGA-AG-3906-01Z-00-DX1.c45a55f5-8fba-41c2-8bda-8fdc702d13dc.svs,0 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b/tasks/TCGA_SARC/DFI/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..b511c34c5d9e25bc89c6c6bc2e1dd190ceebb9bc --- /dev/null +++ b/tasks/TCGA_SARC/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: soft tissue +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_SARC/DFI/task.csv b/tasks/TCGA_SARC/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0d56f2597f9e45455694f45d949655ff5901ca96 --- /dev/null +++ b/tasks/TCGA_SARC/DFI/task.csv @@ -0,0 +1,359 @@ +case_id,filename,DFI_event,DFI_days,DFI +d0d989cb-a50f-4ed9-8478-ae300ebc0970,TCGA-DX-AB32-01Z-00-DX5.F7AE0C03-F18A-4A5C-90D8-4AB15C308A7C.svs,0,3102.0,3 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Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_SARC/DSS/task.csv b/tasks/TCGA_SARC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..db14bf59e64d7fe4cfb9aab394b0b25ec81fad9f --- /dev/null +++ b/tasks/TCGA_SARC/DSS/task.csv @@ -0,0 +1,592 @@ +case_id,filename,DSS_event,DSS_days,DSS +d0d989cb-a50f-4ed9-8478-ae300ebc0970,TCGA-DX-AB32-01Z-00-DX5.F7AE0C03-F18A-4A5C-90D8-4AB15C308A7C.svs,0,3102.0,3 +89ea0e21-c5af-42b4-9f64-5ba4874ab76e,TCGA-DX-A7EF-01Z-00-DX4.E0D64BF7-BF6F-47FA-9D84-F499C589DAA9.svs,1,648.0,5 +d0d989cb-a50f-4ed9-8478-ae300ebc0970,TCGA-DX-AB32-01Z-00-DX1.AF98D141-D9B7-4BD3-A169-B4371D0F989D.svs,0,3102.0,3 +f39cf57e-e8e6-428b-b1ce-3ecc52eecf92,TCGA-3R-A8YX-01Z-00-DX1.C340AFDA-E53B-4EA5-BA65-2F2F6AAA3B21.svs,1,17.0,4 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diff --git a/tasks/TCGA_SARC/primary_diagnosis/task.csv b/tasks/TCGA_SARC/primary_diagnosis/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b72b5062804613949953cb26135afb98bca593df --- /dev/null +++ b/tasks/TCGA_SARC/primary_diagnosis/task.csv @@ -0,0 +1,133 @@ +case_id,filename,label +0020317d-d10e-4e75-8fa6-7c1bdcdee471,TCGA-HS-A5NA-01Z-00-DX1.AF7E1292-ED65-400D-9F6E-B4369B044A6B.svs,0 +0494a8ea-ecf3-4f3e-8b3c-26a9254b6755,TCGA-QQ-A5VC-01Z-00-DX1.39ADCB1D-40E0-4E56-864C-D8F9E5C0753D.svs,0 +059f7eb8-6e42-4f57-8248-ff82896aab54,TCGA-DX-A3UE-01Z-00-DX1.67050794-4EF2-4810-A01F-6A5C1CDB92BB.svs,0 +05d4099f-521a-4df6-abac-f86f84b3af7f,TCGA-WP-A9GB-01Z-00-DX1.CA4DE1BB-69C4-49F6-8ED8-3BB3030DDC1B.svs,0 +0da5ee6c-d012-4a57-9992-9d74937aaa5f,TCGA-IW-A3M4-01Z-00-DX1.03BE04CC-552B-40E8-85DF-BB7F578FFAB9.svs,0 +0f94362d-368f-4570-b8c1-70fc4b1f5e35,TCGA-QQ-A5VB-01Z-00-DX1.58E41898-B3C3-49BD-84D0-5585565ED12A.svs,0 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b/tasks/TCGA_SKCM/ALK_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c639685fc2938133254ce7327ef5daa6e25eeb2d --- /dev/null +++ b/tasks/TCGA_SKCM/ALK_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: skin +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_SKCM/ALK_mutation/task.csv b/tasks/TCGA_SKCM/ALK_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ced3deecc943d1cabd5aecaa6966bf093f28e750 --- /dev/null +++ b/tasks/TCGA_SKCM/ALK_mutation/task.csv @@ -0,0 +1,476 @@ +case_id,filename,label +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,0 +b93f703e-be51-4469-aaac-2d4a87a37639,TCGA-ER-A3ES-01Z-00-DX1.591E818F-FF61-438F-8E41-8F928DA92011.svs,0 +6c353b35-4f6d-4a36-bc8b-8a21dd0beecb,TCGA-ER-A2NH-01Z-00-DX1.8E2DEC74-D875-4420-B572-A462F1016CAB.svs,0 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b/tasks/TCGA_SKCM/BRAF_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c639685fc2938133254ce7327ef5daa6e25eeb2d --- /dev/null +++ b/tasks/TCGA_SKCM/BRAF_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: skin +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_SKCM/BRAF_mutation/task.csv b/tasks/TCGA_SKCM/BRAF_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..292cb06c9ecb8ac3920576c8a15f6098045dc145 --- /dev/null +++ b/tasks/TCGA_SKCM/BRAF_mutation/task.csv @@ -0,0 +1,476 @@ +case_id,filename,label +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,0 +b93f703e-be51-4469-aaac-2d4a87a37639,TCGA-ER-A3ES-01Z-00-DX1.591E818F-FF61-438F-8E41-8F928DA92011.svs,0 +6c353b35-4f6d-4a36-bc8b-8a21dd0beecb,TCGA-ER-A2NH-01Z-00-DX1.8E2DEC74-D875-4420-B572-A462F1016CAB.svs,0 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b/tasks/TCGA_SKCM/DSS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..e245f102cca9e15bdd08e5fb1ff4ccd29e7bd457 --- /dev/null +++ b/tasks/TCGA_SKCM/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: skin +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_SKCM/DSS/task.csv b/tasks/TCGA_SKCM/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..addffd5fc3d9f4e4782388bd1b16e87e951675e1 --- /dev/null +++ b/tasks/TCGA_SKCM/DSS/task.csv @@ -0,0 +1,454 @@ +case_id,filename,DSS_event,DSS_days,DSS +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,1,1429.0,6 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b/tasks/TCGA_SKCM/ERBB2_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c639685fc2938133254ce7327ef5daa6e25eeb2d --- /dev/null +++ b/tasks/TCGA_SKCM/ERBB2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: skin +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_SKCM/ERBB2_mutation/task.csv b/tasks/TCGA_SKCM/ERBB2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..322c75ef3243bd6d24781d31f46cc23698814627 --- /dev/null +++ b/tasks/TCGA_SKCM/ERBB2_mutation/task.csv @@ -0,0 +1,476 @@ +case_id,filename,label +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,0 +b93f703e-be51-4469-aaac-2d4a87a37639,TCGA-ER-A3ES-01Z-00-DX1.591E818F-FF61-438F-8E41-8F928DA92011.svs,0 +6c353b35-4f6d-4a36-bc8b-8a21dd0beecb,TCGA-ER-A2NH-01Z-00-DX1.8E2DEC74-D875-4420-B572-A462F1016CAB.svs,0 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b/tasks/TCGA_SKCM/MET_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..c639685fc2938133254ce7327ef5daa6e25eeb2d --- /dev/null +++ b/tasks/TCGA_SKCM/MET_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: skin +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_SKCM/MET_mutation/task.csv b/tasks/TCGA_SKCM/MET_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..907e556d8949b67978da439c0da08aec0203fd9e --- /dev/null +++ b/tasks/TCGA_SKCM/MET_mutation/task.csv @@ -0,0 +1,476 @@ +case_id,filename,label +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,0 +b93f703e-be51-4469-aaac-2d4a87a37639,TCGA-ER-A3ES-01Z-00-DX1.591E818F-FF61-438F-8E41-8F928DA92011.svs,0 +6c353b35-4f6d-4a36-bc8b-8a21dd0beecb,TCGA-ER-A2NH-01Z-00-DX1.8E2DEC74-D875-4420-B572-A462F1016CAB.svs,0 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b/tasks/TCGA_SKCM/OS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..482b18450edbccb74b9af80dfc673f294edad37b --- /dev/null +++ b/tasks/TCGA_SKCM/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: skin +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_SKCM/OS/task.csv b/tasks/TCGA_SKCM/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a29fa4b4efbee77bc7119895cd357cfe47145085 --- /dev/null +++ b/tasks/TCGA_SKCM/OS/task.csv @@ -0,0 +1,460 @@ +case_id,filename,OS_event,OS_days,OS +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,1,1429.0,6 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+task_type: survival +organ: skin +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_SKCM/PFI/task.csv b/tasks/TCGA_SKCM/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..52ba947fd5dfcf9b7c1c726575f9e830f2f7c923 --- /dev/null +++ b/tasks/TCGA_SKCM/PFI/task.csv @@ -0,0 +1,461 @@ +case_id,filename,PFI_event,PFI_days,PFI +e35be832-6972-4677-b985-02e90d51141a,TCGA-ER-A3EV-01Z-00-DX1.295FE0BC-4BCC-4950-A671-01A49FE10185.svs,1,728.0,6 +b93f703e-be51-4469-aaac-2d4a87a37639,TCGA-ER-A3ES-01Z-00-DX1.591E818F-FF61-438F-8E41-8F928DA92011.svs,1,7514.0,7 +6c353b35-4f6d-4a36-bc8b-8a21dd0beecb,TCGA-ER-A2NH-01Z-00-DX1.8E2DEC74-D875-4420-B572-A462F1016CAB.svs,0,1264.0,2 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+ 0: wildtype + 1: mutant diff --git a/tasks/TCGA_STAD/ARID1A_mutation/task.csv b/tasks/TCGA_STAD/ARID1A_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..05f7e49ce0873d063be3d5e84446358c4f8bddce --- /dev/null +++ b/tasks/TCGA_STAD/ARID1A_mutation/task.csv @@ -0,0 +1,443 @@ +case_id,filename,label +0246823f-99f4-4a46-b2b1-27f81179584c,TCGA-CG-4438-01Z-00-DX1.3691c587-cadf-4523-a332-5a18f52c94b0.svs,0 +02661985-d13f-4007-9a42-5e08d1a6ca10,TCGA-VQ-A8PB-01Z-00-DX1.FAB74FD6-C7AB-422F-ACA9-2DB0ACEC23E5.svs,1 +08c73b36-ede5-4136-b73b-0e964d432f89,TCGA-BR-7851-01Z-00-DX1.1f3a3b7d-0c1e-42af-9d5b-2a90b759eca9.svs,1 +028632ed-d75a-49bb-b579-41962ba502fe,TCGA-CD-A4MG-01Z-00-DX1.CFC4618E-DFE9-4AAA-AD42-E1CC97374020.svs,1 +131fb0f0-e0af-431c-8462-f1925a5f4c72,TCGA-HU-8610-01Z-00-DX1.4F873939-3950-4201-B5DE-20A04A6C9F0D.svs,0 +1e1cdf72-820f-48a4-8fb6-89575d07cde9,TCGA-D7-8570-01Z-00-DX2.7447681C-7F88-43F4-BA7E-655DDA02ACDE.svs,0 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Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_STAD/PFI/task.csv b/tasks/TCGA_STAD/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d244e3c2773270b7694fa6cc07c461229e7b99b8 --- /dev/null +++ b/tasks/TCGA_STAD/PFI/task.csv @@ -0,0 +1,439 @@ +case_id,filename,PFI_event,PFI_days,PFI +0246823f-99f4-4a46-b2b1-27f81179584c,TCGA-CG-4438-01Z-00-DX1.3691c587-cadf-4523-a332-5a18f52c94b0.svs,0,1645.0,3 +02661985-d13f-4007-9a42-5e08d1a6ca10,TCGA-VQ-A8PB-01Z-00-DX1.FAB74FD6-C7AB-422F-ACA9-2DB0ACEC23E5.svs,0,1043.0,3 +028632ed-d75a-49bb-b579-41962ba502fe,TCGA-CD-A4MG-01Z-00-DX1.CFC4618E-DFE9-4AAA-AD42-E1CC97374020.svs,1,74.0,4 +131fb0f0-e0af-431c-8462-f1925a5f4c72,TCGA-HU-8610-01Z-00-DX1.4F873939-3950-4201-B5DE-20A04A6C9F0D.svs,0,23.0,0 +1e1cdf72-820f-48a4-8fb6-89575d07cde9,TCGA-D7-8570-01Z-00-DX2.7447681C-7F88-43F4-BA7E-655DDA02ACDE.svs,0,752.0,3 +1b641270-18f8-4257-821b-d26179e08e28,TCGA-BR-7196-01Z-00-DX1.651ae8f6-2d2e-4520-9419-29b957e85d03.svs,1,348.0,5 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b/tasks/TCGA_STAD/PIK3CA_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..5c02ad024be7a22cd31d1c1d7016407403de08ed --- /dev/null +++ b/tasks/TCGA_STAD/PIK3CA_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: stomach +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_STAD/PIK3CA_mutation/task.csv b/tasks/TCGA_STAD/PIK3CA_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a31ac11b047e43111f6e28fe1a2c72d5b649acc5 --- /dev/null +++ b/tasks/TCGA_STAD/PIK3CA_mutation/task.csv @@ -0,0 +1,443 @@ +case_id,filename,label +0246823f-99f4-4a46-b2b1-27f81179584c,TCGA-CG-4438-01Z-00-DX1.3691c587-cadf-4523-a332-5a18f52c94b0.svs,0 +02661985-d13f-4007-9a42-5e08d1a6ca10,TCGA-VQ-A8PB-01Z-00-DX1.FAB74FD6-C7AB-422F-ACA9-2DB0ACEC23E5.svs,1 +08c73b36-ede5-4136-b73b-0e964d432f89,TCGA-BR-7851-01Z-00-DX1.1f3a3b7d-0c1e-42af-9d5b-2a90b759eca9.svs,1 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b/tasks/TCGA_STAD/SETD2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: stomach +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_STAD/SETD2_mutation/task.csv b/tasks/TCGA_STAD/SETD2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..44af2bc5948bf1a20f12bda8a556ffe38b8e9bfd --- /dev/null +++ b/tasks/TCGA_STAD/SETD2_mutation/task.csv @@ -0,0 +1,443 @@ +case_id,filename,label +0246823f-99f4-4a46-b2b1-27f81179584c,TCGA-CG-4438-01Z-00-DX1.3691c587-cadf-4523-a332-5a18f52c94b0.svs,0 +02661985-d13f-4007-9a42-5e08d1a6ca10,TCGA-VQ-A8PB-01Z-00-DX1.FAB74FD6-C7AB-422F-ACA9-2DB0ACEC23E5.svs,0 +08c73b36-ede5-4136-b73b-0e964d432f89,TCGA-BR-7851-01Z-00-DX1.1f3a3b7d-0c1e-42af-9d5b-2a90b759eca9.svs,0 +028632ed-d75a-49bb-b579-41962ba502fe,TCGA-CD-A4MG-01Z-00-DX1.CFC4618E-DFE9-4AAA-AD42-E1CC97374020.svs,0 +131fb0f0-e0af-431c-8462-f1925a5f4c72,TCGA-HU-8610-01Z-00-DX1.4F873939-3950-4201-B5DE-20A04A6C9F0D.svs,0 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b/tasks/TCGA_STAD/SMAD4_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..38efa468d4e8a34395411883b3d73166b307b377 --- /dev/null +++ b/tasks/TCGA_STAD/SMAD4_mutation/task.csv @@ -0,0 +1,443 @@ +case_id,filename,label +0246823f-99f4-4a46-b2b1-27f81179584c,TCGA-CG-4438-01Z-00-DX1.3691c587-cadf-4523-a332-5a18f52c94b0.svs,0 +02661985-d13f-4007-9a42-5e08d1a6ca10,TCGA-VQ-A8PB-01Z-00-DX1.FAB74FD6-C7AB-422F-ACA9-2DB0ACEC23E5.svs,0 +08c73b36-ede5-4136-b73b-0e964d432f89,TCGA-BR-7851-01Z-00-DX1.1f3a3b7d-0c1e-42af-9d5b-2a90b759eca9.svs,0 +028632ed-d75a-49bb-b579-41962ba502fe,TCGA-CD-A4MG-01Z-00-DX1.CFC4618E-DFE9-4AAA-AD42-E1CC97374020.svs,0 +131fb0f0-e0af-431c-8462-f1925a5f4c72,TCGA-HU-8610-01Z-00-DX1.4F873939-3950-4201-B5DE-20A04A6C9F0D.svs,0 +1e1cdf72-820f-48a4-8fb6-89575d07cde9,TCGA-D7-8570-01Z-00-DX2.7447681C-7F88-43F4-BA7E-655DDA02ACDE.svs,0 +1b641270-18f8-4257-821b-d26179e08e28,TCGA-BR-7196-01Z-00-DX1.651ae8f6-2d2e-4520-9419-29b957e85d03.svs,0 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0000000000000000000000000000000000000000..51e5ad822acf305219d2e60ffbfe5222380a38d4 --- /dev/null +++ b/tasks/TCGA_TGCT/DFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: testis +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_TGCT/DFI/task.csv b/tasks/TCGA_TGCT/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..55aaf4b924a49228960f6f0d9e8f2caeed488325 --- /dev/null +++ b/tasks/TCGA_TGCT/DFI/task.csv @@ -0,0 +1,170 @@ +case_id,filename,DFI_event,DFI_days,DFI +6a7dce9c-1c9d-41a2-a5ca-0a7d36e91fd7,TCGA-2G-AAGA-01Z-00-DX1.2A0E0FD5-2562-4FBC-B330-F816D2746167.svs,0,2439.0,3 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100644 index 0000000000000000000000000000000000000000..9dae90df584d63705a45069df15edd6d2022d1b3 --- /dev/null +++ b/tasks/TCGA_TGCT/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: testis +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_TGCT/DSS/task.csv b/tasks/TCGA_TGCT/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..feba4b1c06b8b6d296308079349895b163b97ffb --- /dev/null +++ b/tasks/TCGA_TGCT/DSS/task.csv @@ -0,0 +1,212 @@ +case_id,filename,DSS_event,DSS_days,DSS +0cf24a4b-66af-454b-9e74-715cff8b73d4,TCGA-2G-AAGZ-01Z-00-DX2.5F5867F0-1BE3-49DF-98BE-8C5A06C86B9B.svs,0,5233.0,3 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classification +organ: testis +sample_col: filename +label_dict: + 0: "Seminoma, NOS" + 1: "Mixed germ cell tumor" + 2: "Embryonal carcinoma, NOS" diff --git a/tasks/TCGA_TGCT/primary_diagnosis/task.csv b/tasks/TCGA_TGCT/primary_diagnosis/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..cd300e0ee26b920117ad2f01bad679249acc8597 --- /dev/null +++ b/tasks/TCGA_TGCT/primary_diagnosis/task.csv @@ -0,0 +1,171 @@ +case_id,filename,label +02461e5d-eee8-4222-8b6d-bf141aad9440,TCGA-XY-A8S3-01Z-00-DX1.701269A0-F733-4EA1-8FA5-6D22306DCF4A.svs,2 +0297898d-6f57-4b22-8319-55231d4d7588,TCGA-2G-AAHH-01Z-00-DX1.E1452962-6214-4361-87F4-4B2782708655.svs,0 +03e0012f-734d-475d-986a-4483b0bf35a2,TCGA-2G-AAHV-01Z-00-DX1.2AF4D02A-51B8-48F0-87CE-92E9E8CF851C.svs,0 +0556e2d9-4c92-4293-ad66-2d7d24d5d213,TCGA-2X-A9D5-01Z-00-DX1.EC73B0EA-E673-4EE7-82CF-52B957FE96C3.svs,0 +05d2ee50-84c6-4194-97bb-a9693f6e5d6b,TCGA-2G-AAI5-01Z-00-DX1.C06FF9CC-B532-478C-BE7E-013BC419C4EA.svs,0 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DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_THCA/DFI/task.csv b/tasks/TCGA_THCA/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..132ce33dcc008e94bc86ef938d5593bcfdbe0348 --- /dev/null +++ b/tasks/TCGA_THCA/DFI/task.csv @@ -0,0 +1,364 @@ +case_id,filename,DFI_event,DFI_days,DFI +e8f56d0f-eee4-4def-a43a-dec91f4382a1,TCGA-EM-A3AQ-01Z-00-DX1.3B5348E7-FD6B-49A9-B211-E3934E0BDC92.svs,0,904.0,1 +fd3315da-c870-4ad0-9d2a-50b1647d3e46,TCGA-J8-A4HW-01Z-00-DX1.51EEBB5E-DD1E-4071-9885-C100581AD924.svs,0,79.0,0 +35277c30-010c-4d3f-9dfe-754bf72799d7,TCGA-DJ-A3V4-01Z-00-DX1.08D7B056-4A9A-4E1F-8D1E-AB7F42AAC779.svs,0,1294.0,2 +097b9cf1-ec0c-487c-9ade-2bdab12eb4ca,TCGA-ET-A25R-01Z-00-DX1.1D13E4C2-31FB-4A97-B99C-42A857522301.svs,0,1930.0,3 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b/tasks/TCGA_THCA/DSS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: thyroid gland +sample_col: case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_THCA/DSS/task.csv b/tasks/TCGA_THCA/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0daad2194957f8f02840724d9c2637d3cb55ee4c --- /dev/null +++ b/tasks/TCGA_THCA/DSS/task.csv @@ -0,0 +1,514 @@ +case_id,filename,DSS_event,DSS_days,DSS +e8f56d0f-eee4-4def-a43a-dec91f4382a1,TCGA-EM-A3AQ-01Z-00-DX1.3B5348E7-FD6B-49A9-B211-E3934E0BDC92.svs,0,904.0,1 +fd3315da-c870-4ad0-9d2a-50b1647d3e46,TCGA-J8-A4HW-01Z-00-DX1.51EEBB5E-DD1E-4071-9885-C100581AD924.svs,0,79.0,0 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b/tasks/TCGA_THCA/OS/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: thyroid gland +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_THCA/OS/task.csv b/tasks/TCGA_THCA/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..796291cf9e26acf1d3784149c142337fd675193f --- /dev/null +++ b/tasks/TCGA_THCA/OS/task.csv @@ -0,0 +1,520 @@ +case_id,filename,OS_event,OS_days,OS +e8f56d0f-eee4-4def-a43a-dec91f4382a1,TCGA-EM-A3AQ-01Z-00-DX1.3B5348E7-FD6B-49A9-B211-E3934E0BDC92.svs,0,904.0,1 +fd3315da-c870-4ad0-9d2a-50b1647d3e46,TCGA-J8-A4HW-01Z-00-DX1.51EEBB5E-DD1E-4071-9885-C100581AD924.svs,0,79.0,0 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2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_THCA/PFI/task.csv b/tasks/TCGA_THCA/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b2f260ae76ca3fa2de5c5a1501e173244694c253 --- /dev/null +++ b/tasks/TCGA_THCA/PFI/task.csv @@ -0,0 +1,520 @@ +case_id,filename,PFI_event,PFI_days,PFI +e8f56d0f-eee4-4def-a43a-dec91f4382a1,TCGA-EM-A3AQ-01Z-00-DX1.3B5348E7-FD6B-49A9-B211-E3934E0BDC92.svs,0,904.0,2 +fd3315da-c870-4ad0-9d2a-50b1647d3e46,TCGA-J8-A4HW-01Z-00-DX1.51EEBB5E-DD1E-4071-9885-C100581AD924.svs,0,79.0,0 +d4c68c1c-a3f3-4e0c-b555-d457378a1d24,TCGA-BJ-A291-01Z-00-DX1.28774C19-DBFD-4D55-8E49-989F00FB51E1.svs,0,696.0,1 +35277c30-010c-4d3f-9dfe-754bf72799d7,TCGA-DJ-A3V4-01Z-00-DX1.08D7B056-4A9A-4E1F-8D1E-AB7F42AAC779.svs,0,1294.0,2 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+task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_THYM/OS/task.csv b/tasks/TCGA_THYM/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..81e670431658ba029c781eb30f261172f8bb631d --- /dev/null +++ b/tasks/TCGA_THYM/OS/task.csv @@ -0,0 +1,181 @@ +case_id,filename,OS_event,OS_days,OS +acaaed1a-2667-4c56-919b-daf5574371bb,TCGA-3G-AB0T-01Z-00-DX4.111A192D-7DCF-4DF8-B611-3CC6A9845A43.svs,1,2488.0,7 +3eab80e6-21bc-45dd-a7b5-411a5dad4e9a,TCGA-ZB-A96M-01Z-00-DX1.47216E10-3C34-43CE-A4F3-9C90943766A5.svs,0,14.0,0 +440421ad-5f1f-4345-86a2-fc25cb7cd453,TCGA-3S-A8YW-01Z-00-DX1.D7B6B428-6D4C-43F0-B5AD-2DF2256BE115.svs,0,643.0,0 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new file mode 100644 index 0000000000000000000000000000000000000000..5abe3a43113a4a391fb8878f0ecc225adf640e8c --- /dev/null +++ b/tasks/TCGA_THYM/primary_diagnosis/task.csv @@ -0,0 +1,53 @@ +case_id,filename,label +0050d8be-1db6-4c17-8bef-3ae2eaaa63ce,TCGA-4V-A9QX-01Z-00-DX1.1DC8BA85-F5AB-4A98-A4DE-B6B918C8A27C.svs,0 +09f8acfc-4d80-4005-9f40-7485309997f5,TCGA-XU-AAY1-01Z-00-DX1.77CEAE4B-CB74-48B5-8EAA-042DBF982598.svs,0 +0be4fa90-0122-4b26-b35f-7b1a4a16e63b,TCGA-4V-A9QM-01Z-00-DX1.7507E474-6ED9-4745-B9F3-43DACE270E9E.svs,0 +15a2baae-d15e-4349-9358-74356a2d2ad0,TCGA-X7-A8DE-01Z-00-DX1.088D1AFE-74F8-4251-A037-43AB99A358D3.svs,1 +173b805f-3088-43f6-a159-95fff3581fd5,TCGA-ZB-A96F-01Z-00-DX1.78553E9D-BA82-49A3-9F78-C105276F7C45.svs,0 +23cc4cd3-87dc-4342-9072-be3695e393fa,TCGA-X7-A8M4-01Z-00-DX1.585F6B69-B1E3-4F96-8D4A-5FEC4E4EF465.svs,1 +2fdb7682-1dce-40bf-8180-d3a5a084ecb1,TCGA-XM-AAZ3-01Z-00-DX1.3D14D30E-54BD-4579-8E86-A5D480EE68EC.svs,0 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b/tasks/TCGA_UCEC/ALK_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/ALK_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/ALK_mutation/task.csv b/tasks/TCGA_UCEC/ALK_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..022c3f6ffeef816b9bd240ce5cbfb9a26834f21a --- /dev/null +++ b/tasks/TCGA_UCEC/ALK_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 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b/tasks/TCGA_UCEC/APC_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..1c79747d4f25ca3f284499d8db1f8868e140ed68 --- /dev/null +++ b/tasks/TCGA_UCEC/APC_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0 +19511f9e-7b0e-4a06-998d-c1837d37c6ec,TCGA-B5-A121-01Z-00-DX1.EA4B5585-0DD5-4F4A-876E-67031376C9FC.svs,0 +0f064588-2d7e-439a-90a6-dfa17bb8af15,TCGA-AP-A1DR-01Z-00-DX1.59D56F74-930F-4B0D-91D4-B3C0B4A92073.svs,1 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b/tasks/TCGA_UCEC/ATRX_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/ATRX_mutation/task.csv b/tasks/TCGA_UCEC/ATRX_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b7d7129deb6a496616abd5c434d8677b03b4aa99 --- /dev/null +++ b/tasks/TCGA_UCEC/ATRX_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0 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0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/BRAF_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/BRAF_mutation/task.csv b/tasks/TCGA_UCEC/BRAF_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..8133ae515019122aebf9eb1ec40c67ac35a52551 --- /dev/null +++ b/tasks/TCGA_UCEC/BRAF_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 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case_id +task_col: DSS +event_col: DSS_event +time_col: DSS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_UCEC/DSS/task.csv b/tasks/TCGA_UCEC/DSS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ceb414ccbd6d3263ec39f81b830cf5ce47276e6b --- /dev/null +++ b/tasks/TCGA_UCEC/DSS/task.csv @@ -0,0 +1,566 @@ +case_id,filename,DSS_event,DSS_days,DSS +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0,1114.0,2 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0,1953.0,3 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1,421.0,4 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0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/ERBB2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/ERBB2_mutation/task.csv b/tasks/TCGA_UCEC/ERBB2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b27012d3f3242e54fcf302dc7c625eee10e1192a --- /dev/null +++ b/tasks/TCGA_UCEC/ERBB2_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,0 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 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b/tasks/TCGA_UCEC/KRAS_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/KRAS_mutation/task.csv b/tasks/TCGA_UCEC/KRAS_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..5d108e9d28e21c553781a49a33488d69a99fad2b --- /dev/null +++ b/tasks/TCGA_UCEC/KRAS_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,1 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,0 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,1 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0 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0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/NF1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/NF1_mutation/task.csv b/tasks/TCGA_UCEC/NF1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..2e63e1730afcaecab174392cb3431a5f6ce92313 --- /dev/null +++ b/tasks/TCGA_UCEC/NF1_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,1 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Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_UCEC/OS/task.csv b/tasks/TCGA_UCEC/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..7833e7c34e9dd089da8a9e490f0797a4c1607bf7 --- /dev/null +++ b/tasks/TCGA_UCEC/OS/task.csv @@ -0,0 +1,566 @@ +case_id,filename,OS_event,OS_days,OS +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0,1114.0,2 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0,1953.0,3 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1,421.0,4 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0,593.0,1 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0,1721.0,3 +19511f9e-7b0e-4a06-998d-c1837d37c6ec,TCGA-B5-A121-01Z-00-DX1.EA4B5585-0DD5-4F4A-876E-67031376C9FC.svs,0,504.0,0 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0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/PBRM1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/PBRM1_mutation/task.csv b/tasks/TCGA_UCEC/PBRM1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..8f580e0edb56ff647e5a32107ccce2858106d98b --- /dev/null +++ b/tasks/TCGA_UCEC/PBRM1_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,1 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 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4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_UCEC/PFI/task.csv b/tasks/TCGA_UCEC/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..65b5d17b8e5671dd5c8c53b2fd0ddac12b48d26b --- /dev/null +++ b/tasks/TCGA_UCEC/PFI/task.csv @@ -0,0 +1,566 @@ +case_id,filename,PFI_event,PFI_days,PFI +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0,1114.0,2 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0,1953.0,3 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1,280.0,4 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0,593.0,1 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0,1721.0,3 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b/tasks/TCGA_UCEC/PIK3CA_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/PIK3CA_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/PIK3CA_mutation/task.csv b/tasks/TCGA_UCEC/PIK3CA_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..ed1123a5cdf959e92363f91546d2010386b7a3b5 --- /dev/null +++ b/tasks/TCGA_UCEC/PIK3CA_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,1 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,1 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 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b/tasks/TCGA_UCEC/PTEN_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..bf3d941fce8c41a5def83252a463d16f9418972c --- /dev/null +++ b/tasks/TCGA_UCEC/PTEN_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,1 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,1 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,1 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,1 +19511f9e-7b0e-4a06-998d-c1837d37c6ec,TCGA-B5-A121-01Z-00-DX1.EA4B5585-0DD5-4F4A-876E-67031376C9FC.svs,0 +0f064588-2d7e-439a-90a6-dfa17bb8af15,TCGA-AP-A1DR-01Z-00-DX1.59D56F74-930F-4B0D-91D4-B3C0B4A92073.svs,1 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b/tasks/TCGA_UCEC/SETD2_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/SETD2_mutation/task.csv b/tasks/TCGA_UCEC/SETD2_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4eb8f36e1e6aefe4d035ac63c268956b3ed34b18 --- /dev/null +++ b/tasks/TCGA_UCEC/SETD2_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 +f47df5f9-7c60-4b1a-b574-7036245af341,TCGA-BG-A0W2-01Z-00-DX1.C1261900-5105-4278-8522-00CD8927AE15.svs,0 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0000000000000000000000000000000000000000..6f6b27145e5c01f882d59b3e67ea265fce918776 --- /dev/null +++ b/tasks/TCGA_UCEC/TERT_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus, nos +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/TCGA_UCEC/TERT_mutation/task.csv b/tasks/TCGA_UCEC/TERT_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..7a5e1973963c674ef299ecb4e8ddbaca87568976 --- /dev/null +++ b/tasks/TCGA_UCEC/TERT_mutation/task.csv @@ -0,0 +1,567 @@ +case_id,filename,label +e46b6434-ee88-4630-9fc3-441afc431745,TCGA-DI-A1BY-01Z-00-DX1.0ED757BE-AE66-442C-B3A1-5428C050D044.svs,0 +5cba9441-6812-49c0-a0f6-7928ed4e5b81,TCGA-B5-A0K6-01Z-00-DX1.6034D569-E7E4-432A-A5B0-AD365EFB7F29.svs,0 +dcfbe781-a92a-45b5-b80a-e3bb3bdc0d9a,TCGA-FI-A2D5-01Z-00-DX1.CEF7F185-1E5B-4A40-B462-E39B702ED765.svs,1 +f5bd3902-ff7f-4233-8f74-beef3676af9a,TCGA-B5-A11W-01Z-00-DX1.C5466A91-D7A6-4797-B6D1-C4FD8FABDCA6.svs,0 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+task_type: survival +organ: uterus, nos +sample_col: case_id +task_col: DFI +event_col: DFI_event +time_col: DFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_UCS/DFI/task.csv b/tasks/TCGA_UCS/DFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..5f6fec1bebb41ffaae3f17ecad65e4f4ef53c815 --- /dev/null +++ b/tasks/TCGA_UCS/DFI/task.csv @@ -0,0 +1,45 @@ +case_id,filename,DFI_event,DFI_days,DFI +4a31c620-5c6e-44ae-b7f0-0553c4b7eb33,TCGA-NA-A4QW-01Z-00-DX1.37801BA0-624E-47FB-99ED-219D4F22E36C.svs,0,2457.0,3 +4daeefc3-0e2e-4537-8e13-af9717b3ce29,TCGA-N5-A4RS-01Z-00-DX1.0BE07A3E-C1FB-417C-ADEB-C7CF9DED65CD.svs,1,427.0,4 +75a43851-8fa0-4259-b843-88dc6fbce270,TCGA-N6-A4V9-01Z-00-DX1.5E294AB9-44B9-4207-B8D5-41D8C5BF3326.svs,0,979.0,2 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b/tasks/TCGA_UCS/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b6763071218c057ae22fe9a0b979b5ab7922a9fe --- /dev/null +++ b/tasks/TCGA_UCS/PFI/task.csv @@ -0,0 +1,92 @@ +case_id,filename,PFI_event,PFI_days,PFI +605e9e51-270c-48fb-b198-46b5512b29da,TCGA-ND-A4W6-01Z-00-DX2.6C2B0FF1-4DC6-425C-844F-6BDD4C658451.svs,1,317.0,5 +2aa77a19-efde-478a-a113-c0af75708b31,TCGA-N5-A4RA-01Z-00-DX1.663D082C-3844-468F-9D5D-260F7655D0B6.svs,0,1591.0,3 +4a31c620-5c6e-44ae-b7f0-0553c4b7eb33,TCGA-NA-A4QW-01Z-00-DX1.37801BA0-624E-47FB-99ED-219D4F22E36C.svs,0,2457.0,3 +33ad8d6e-10f4-4965-9721-1a9984f9e87d,TCGA-N8-A56S-01Z-00-DX1.BC1241E1-777A-4FFC-A09D-E8F0E066BCFD.svs,1,199.0,5 +4daeefc3-0e2e-4537-8e13-af9717b3ce29,TCGA-N5-A4RS-01Z-00-DX1.0BE07A3E-C1FB-417C-ADEB-C7CF9DED65CD.svs,1,427.0,6 +75a43851-8fa0-4259-b843-88dc6fbce270,TCGA-N6-A4V9-01Z-00-DX1.5E294AB9-44B9-4207-B8D5-41D8C5BF3326.svs,0,979.0,3 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a/tasks/TCGA_UVM/BAP1_mutation/task.csv b/tasks/TCGA_UVM/BAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..28d8c659275e6ae8b8698c1eb96042e1f44d32a1 --- /dev/null +++ b/tasks/TCGA_UVM/BAP1_mutation/task.csv @@ -0,0 +1,81 @@ +case_id,filename,label +df291bbf-fc62-4c40-9582-289ac78225fd,TCGA-YZ-A983-01Z-00-DX1.63D28F02-8496-467E-9A00-A16431335342.svs,0 +56ed4ea2-18ce-48d4-bf72-9ffabe576ca9,TCGA-WC-A881-01Z-00-DX1.E3827A53-8E60-4018-AA54-37A8596C7040.svs,0 +9e35ef82-55b0-460b-8ab9-8cd708efa3b1,TCGA-VD-AA8T-01Z-00-DX1.AC226DDF-7ED7-4BC1-B1BE-C697AE3C2F21.svs,1 +22e7816d-4be9-4f84-b487-baa6ca35452d,TCGA-VD-A8KI-01Z-00-DX1.E82FC46C-138C-4115-B81C-6A991FB753A2.svs,0 +411ddf79-fe92-44ad-8d10-eeb703f11be7,TCGA-V4-A9F2-01Z-00-DX1.59FA5015-785F-4715-9CA6-C2C7C1299CC6.svs,0 +014d4b17-d683-438b-9287-33fcec82bf5a,TCGA-VD-A8KO-01Z-00-DX1.E35420FA-00A5-4954-8DE2-861359A01667.svs,0 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--- /dev/null +++ b/tasks/TCGA_UVM/DSS/task.csv @@ -0,0 +1,81 @@ +case_id,filename,DSS_event,DSS_days,DSS +df291bbf-fc62-4c40-9582-289ac78225fd,TCGA-YZ-A983-01Z-00-DX1.63D28F02-8496-467E-9A00-A16431335342.svs,0,798.0,2 +56ed4ea2-18ce-48d4-bf72-9ffabe576ca9,TCGA-WC-A881-01Z-00-DX1.E3827A53-8E60-4018-AA54-37A8596C7040.svs,0,1065.0,2 +9e35ef82-55b0-460b-8ab9-8cd708efa3b1,TCGA-VD-AA8T-01Z-00-DX1.AC226DDF-7ED7-4BC1-B1BE-C697AE3C2F21.svs,0,49.0,0 +22e7816d-4be9-4f84-b487-baa6ca35452d,TCGA-VD-A8KI-01Z-00-DX1.E82FC46C-138C-4115-B81C-6A991FB753A2.svs,1,1113.0,6 +411ddf79-fe92-44ad-8d10-eeb703f11be7,TCGA-V4-A9F2-01Z-00-DX1.59FA5015-785F-4715-9CA6-C2C7C1299CC6.svs,0,734.0,1 +014d4b17-d683-438b-9287-33fcec82bf5a,TCGA-VD-A8KO-01Z-00-DX1.E35420FA-00A5-4954-8DE2-861359A01667.svs,0,795.0,2 +60d7b6cf-d605-4837-9061-612f6bbb7393,TCGA-WC-A87W-01Z-00-DX1.F1119669-4C30-4FAE-8BF2-432E8037268B.svs,0,1703.0,3 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index 0000000000000000000000000000000000000000..3affa8d996762b5f5025839b8bfbb6db174573ba --- /dev/null +++ b/tasks/TCGA_UVM/PFI/config.yaml @@ -0,0 +1,17 @@ +task_type: survival +organ: eye and adnexa +sample_col: case_id +task_col: PFI +event_col: PFI_event +time_col: PFI_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 +metrics: +- cindex diff --git a/tasks/TCGA_UVM/PFI/task.csv b/tasks/TCGA_UVM/PFI/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..1883292481cbabf019f4bd03ffcff491262ac4d4 --- /dev/null +++ b/tasks/TCGA_UVM/PFI/task.csv @@ -0,0 +1,80 @@ +case_id,filename,PFI_event,PFI_days,PFI +df291bbf-fc62-4c40-9582-289ac78225fd,TCGA-YZ-A983-01Z-00-DX1.63D28F02-8496-467E-9A00-A16431335342.svs,0,798.0,2 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+sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/bc_therapy/er_status/task.csv b/tasks/bc_therapy/er_status/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..c01ab33eb4a1659c00c25dc3287229bdf41fa1a6 --- /dev/null +++ b/tasks/bc_therapy/er_status/task.csv @@ -0,0 +1,167 @@ +case_id,filename,label +T159,634925.svs,1 +T051,473348.svs,1 +T124,634858.svs,1 +T072,473370.svs,1 +T133,634875.svs,1 +T095,631901.svs,0 +T062,473358.svs,1 +T026,471098.svs,1 +T041,473338.svs,1 +T064,473360.svs,1 +T040,473337.svs,0 +T033,473330.svs,0 +T075,473373.svs,1 +T122,634854.svs,1 +T139,634888.svs,1 +T044,473341.svs,1 +T150,634905.svs,0 +T104,631917.svs,0 +T169,636837.svs,1 +T083,631614.svs,1 +T039,473336.svs,1 +T045,473342.svs,1 +T071,473369.svs,0 +T012,470661.svs,1 +T077,473375.svs,1 +T114,634840.svs,0 +T149,634904.svs,1 +T035,473332.svs,0 +T067,473363.svs,1 +T020,471107.svs,1 +T110,632343.svs,1 +T087,631617.svs,1 +T042,473339.svs,0 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b/tasks/camelyon17/breast_cancer_metastases/config.yaml @@ -0,0 +1,8 @@ +task_type: classification +organ: breast +sample_col: filename +label_dict: + 0: negative + 1: itc + 2: micro + 3: macro diff --git a/tasks/camelyon17/breast_cancer_metastases/task.csv b/tasks/camelyon17/breast_cancer_metastases/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6976b66896c85c601d4892bdd6a8a536404af9d0 --- /dev/null +++ b/tasks/camelyon17/breast_cancer_metastases/task.csv @@ -0,0 +1,500 @@ +filename,label +patient_066_node_0.tif,0 +patient_015_node_0.tif,0 +patient_096_node_0.tif,3 +patient_078_node_2.tif,0 +patient_070_node_0.tif,0 +patient_003_node_0.tif,0 +patient_088_node_2.tif,0 +patient_080_node_0.tif,1 +patient_042_node_2.tif,0 +patient_031_node_2.tif,0 +patient_039_node_0.tif,3 +patient_054_node_2.tif,0 +patient_027_node_2.tif,2 +patient_067_node_3.tif,1 +patient_014_node_3.tif,1 +patient_097_node_3.tif,3 +patient_071_node_3.tif,0 +patient_079_node_1.tif,0 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+patient_064_node_2.tif,0 +patient_094_node_2.tif,3 +patient_017_node_2.tif,3 +patient_056_node_0.tif,0 +patient_025_node_0.tif,0 +patient_048_node_2.tif,0 +patient_040_node_0.tif,0 +patient_033_node_0.tif,0 +patient_073_node_1.tif,3 +patient_041_node_4.tif,0 +patient_032_node_4.tif,0 +patient_083_node_1.tif,0 +patient_008_node_3.tif,0 +patient_000_node_1.tif,0 +patient_065_node_1.tif,0 +patient_057_node_4.tif,0 +patient_095_node_1.tif,0 +patient_024_node_4.tif,1 +patient_016_node_1.tif,1 +patient_057_node_3.tif,0 +patient_024_node_3.tif,0 +patient_041_node_3.tif,0 +patient_049_node_1.tif,2 +patient_032_node_3.tif,0 +patient_008_node_4.tif,0 diff --git a/tasks/cptac_all/organ/config.yaml b/tasks/cptac_all/organ/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..207f70e41de355b81ad348ae1c4b7bec333b45e6 --- /dev/null +++ b/tasks/cptac_all/organ/config.yaml @@ -0,0 +1,14 @@ +task_type: classification +organ: all +sample_col: filename +label_dict: + 0: Breast cancer (BRCA) + 1: Clear cell renal cell carcinoma (CCRCC) + 2: Colon adenocarcinoma (COAD) + 3: Glioblastoma (GBM) + 4: Head and neck squamous cell carcinoma (HNSC) + 5: Lung squamous cell carcinoma (LSCC) + 6: Lung adenocarcinoma (LUAD) + 7: Pancreatic ductal adenocarcinoma (PDA) + 8: Ovarian cancer (OV) + 9: Uterine corpus endometrial carcinoma (UCEC) diff --git a/tasks/cptac_all/organ/task.csv b/tasks/cptac_all/organ/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..319837eaa627bd0fd0af5c0c65effeb751d9b57a --- /dev/null +++ b/tasks/cptac_all/organ/task.csv @@ -0,0 +1,2155 @@ +case_id,filename,label +01BR030,01BR030-1f5a9aad-61a1-4a64-a9b0-38cd2b.svs,0 +01BR043,01BR043-c4015b28-269b-4dc4-8b2e-1b83f7.svs,0 +01CO008,01CO008-9452572f-e3ec-4063-a82e-43ac90.svs,2 +01CO022,01CO022-7a0266b4-b07c-41dc-8ddd-350e1b.svs,2 +1,01OV002-467256db-a312-4346-9ac0-e49e44.svs,8 +4,01OV007-9b90eb78-2f50-4aeb-b010-d642f9.svs,8 +10,01OV010-f81cfaa7-2edd-4dd1-8219-0453c9.svs,8 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0000000000000000000000000000000000000000..62b72ef7e3159f6e30e0d8841a7e8cf76c1b72a8 --- /dev/null +++ b/tasks/cptac_ccrcc/PBRM1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: kidney +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/cptac_ccrcc/PBRM1_mutation/task.csv b/tasks/cptac_ccrcc/PBRM1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a34ba913f684407d6d8ad7cd9f0cf9e026552a78 --- /dev/null +++ b/tasks/cptac_ccrcc/PBRM1_mutation/task.csv @@ -0,0 +1,246 @@ +case_id,filename,label +C3L-01557,C3L-01557-21.svs,1 +C3N-01261,C3N-01261-21.svs,1 +C3N-01261,C3N-01261-22.svs,1 +C3N-01261,C3N-01261-23.svs,1 +C3N-00314,C3N-00314-21.svs,1 +C3N-00314,C3N-00314-22.svs,1 +C3N-00314,C3N-00314-23.svs,1 +C3N-00314,C3N-00314-24.svs,1 +C3L-00088,C3L-00088-21.svs,0 +C3L-00088,C3L-00088-22.svs,0 +C3L-00812,C3L-00812-21.svs,1 +C3N-00154,C3N-00154-24.svs,1 +C3N-00154,C3N-00154-21.svs,1 +C3N-00154,C3N-00154-22.svs,1 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a/tasks/cptac_ccrcc/VHL_mutation/config.yaml b/tasks/cptac_ccrcc/VHL_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..99c1f3c048e5a85a7903765c7adcb920a784f11b --- /dev/null +++ b/tasks/cptac_ccrcc/VHL_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: kidney +sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/cptac_ccrcc/VHL_mutation/task.csv b/tasks/cptac_ccrcc/VHL_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..d20c9d696020b8324642457815cefef0b348fa32 --- /dev/null +++ b/tasks/cptac_ccrcc/VHL_mutation/task.csv @@ -0,0 +1,246 @@ +case_id,filename,label +C3N-00646,C3N-00646-21.svs,0 +C3N-00646,C3N-00646-22.svs,0 +C3N-00646,C3N-00646-23.svs,0 +C3N-00646,C3N-00646-24.svs,0 +C3N-00573,C3N-00573-21.svs,1 +C3N-00573,C3N-00573-22.svs,1 +C3N-00573,C3N-00573-23.svs,1 +C3N-00573,C3N-00573-24.svs,1 +C3L-00011,C3L-00011-21.svs,1 +C3N-00246,C3N-00246-21.svs,1 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0000000000000000000000000000000000000000..892f6f8cb58aaeed7b9778b0a57afc95aa68f18e --- /dev/null +++ b/tasks/cptac_coad/Immune_class/task.csv @@ -0,0 +1,99 @@ +case_id,filename,label +11CO031,11CO031-c6ae57a7-65a0-438e-bae2-97b1c8.svs,2 +05CO039,05CO039-c952715e-35ca-4e18-ad6f-dd4e39.svs,0 +11CO043,11CO043-591fb460-703a-437d-8d9a-ff2a35.svs,0 +11CO070,11CO070-c8694e31-2c8f-4eb6-a7ef-a137d9.svs,2 +11CO021,11CO021-cf795cd2-317b-4897-a35e-390001.svs,1 +09CO011,09CO011-1425a1a1-c835-47a2-a9b9-4db5d0.svs,0 +05CO015,05CO015-0aef1fe8-ca61-4113-81d0-d82ee7.svs,2 +05CO015,05CO015-416bb805-e4cd-4ca6-8fdd-1eec2d.svs,2 +11CO030,11CO030-4cdeecb5-19fb-493c-91f5-eb0efc.svs,1 +11CO077,11CO077-5557e478-3e6f-475b-8acc-1b4159.svs,1 +16CO011,16CO011-7782134d-02db-44ee-adfa-fc1372.svs,2 +09CO006,09CO006-c2c53076-b5db-4b7d-983c-a35740.svs,1 +11CO047,11CO047-3ca0ab23-70ae-4083-bd7d-9f71d8.svs,0 +11CO057,11CO057-e515eb5c-8005-416a-9b42-59de9d.svs,0 +09CO014,09CO014-1ea1d7ee-e382-4a68-8e7c-74e833.svs,2 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a/tasks/cptac_coad/KRAS_mutation/task.csv b/tasks/cptac_coad/KRAS_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..f4742742e11f1d22c01274275bf3be0574d4dc3f --- /dev/null +++ b/tasks/cptac_coad/KRAS_mutation/task.csv @@ -0,0 +1,99 @@ +case_id,filename,label +20CO001,20CO001-d8345fa1-f692-4025-bc82-bfaec6.svs,1 +05CO053,05CO053-66b829db-1cdd-460d-b2f3-0e9ca9.svs,1 +09CO014,09CO014-1ea1d7ee-e382-4a68-8e7c-74e833.svs,1 +05CO026,05CO026-b2615b47-5ac2-4775-9205-50990d.svs,1 +16CO011,16CO011-7782134d-02db-44ee-adfa-fc1372.svs,1 +05CO032,05CO032-695b0b00-a86b-43c0-a6c8-50a840.svs,0 +11CO007,11CO007-799893aa-d523-4a08-9ea7-611cca.svs,0 +09CO005,09CO005-ec9afcc4-ccf7-4226-b0e8-d6897d.svs,1 +11CO061,11CO061-8c73f3a5-fea8-4942-90c0-966f66.svs,0 +16CO003,16CO003-47b9deba-dea0-4e0c-8b0a-4864c3.svs,0 +01CO015,01CO015-b873f54a-5a86-4dca-90f9-715820.svs,0 +11CO077,11CO077-5557e478-3e6f-475b-8acc-1b4159.svs,0 +09CO018,09CO018-743c74e4-cd76-4f38-8cb4-3c9107.svs,0 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b/tasks/cptac_coad/PIK3CA_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/cptac_coad/PIK3CA_mutation/task.csv b/tasks/cptac_coad/PIK3CA_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..054912e3c050e85249ed5e4c5de214f7cb9306c5 --- /dev/null +++ b/tasks/cptac_coad/PIK3CA_mutation/task.csv @@ -0,0 +1,99 @@ +case_id,filename,label +16CO011,16CO011-7782134d-02db-44ee-adfa-fc1372.svs,0 +06CO001,06CO001-87408d9e-4029-4e8f-b14c-8efc04.svs,0 +09CO013,09CO013-dffcac99-9eac-4717-aeb6-f4a2e7.svs,0 +05CO035,05CO035-1312a0e0-5025-433e-9670-0595bb.svs,0 +05CO028,05CO028-e0068ac5-f557-443a-bd4b-bdfcef.svs,1 +11CO037,11CO037-1563ef63-d2e6-406f-adc1-255949.svs,0 +21CO006,21CO006-5f823547-ee16-45b7-a6a0-ef25d6.svs,0 +22CO006,22CO006-4d86cf19-8d5b-46b5-ab4c-ace0b2.svs,0 +05CO050,05CO050-17cd2121-d347-431c-9cc7-fbab14.svs,1 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b/tasks/cptac_coad/SETD1B_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..dce798c4d087109fe52f0fd9d4e971aec651a9ae --- /dev/null +++ b/tasks/cptac_coad/SETD1B_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: colon +sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/cptac_coad/SETD1B_mutation/task.csv b/tasks/cptac_coad/SETD1B_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..4a69889dc816577bbfdee060a6e098fe64b0cefc --- /dev/null +++ b/tasks/cptac_coad/SETD1B_mutation/task.csv @@ -0,0 +1,99 @@ +case_id,filename,label +05CO044,05CO044-8af80ae9-2088-4124-91fb-8d6c17.svs,0 +09CO011,09CO011-1425a1a1-c835-47a2-a9b9-4db5d0.svs,0 +01CO015,01CO015-b873f54a-5a86-4dca-90f9-715820.svs,0 +09CO013,09CO013-dffcac99-9eac-4717-aeb6-f4a2e7.svs,0 +05CO041,05CO041-b4dd4a04-5eda-43dd-8298-215b07.svs,1 +05CO002,05CO002-159c49fd-40ff-4616-b6b6-be21a6.svs,0 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b/tasks/cptac_hnsc/Histologic_Grade/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..73eef48a3fd9ad74a426b11c96ebf042424f6a39 --- /dev/null +++ b/tasks/cptac_hnsc/Histologic_Grade/config.yaml @@ -0,0 +1,11 @@ +task_type: classification +organ: head and neck + - head + - neck +sample_col: case_id +label_dict: + 0: 1 + 1: 2 + 2: 3 +metrics: +- weighted_kappa diff --git a/tasks/cptac_hnsc/Histologic_Grade/task.csv b/tasks/cptac_hnsc/Histologic_Grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..9453208c2a70e6c67fb962347ef326ab1a12b323 --- /dev/null +++ b/tasks/cptac_hnsc/Histologic_Grade/task.csv @@ -0,0 +1,257 @@ +case_id,filename,label +C3N-00307,C3N-00307-22.svs,2 +C3N-00307,C3N-00307-21.svs,2 +C3N-00307,C3N-00307-23.svs,2 +C3N-00307,C3N-00307-24.svs,2 +C3N-03488,C3N-03488-23.svs,1 +C3N-03488,C3N-03488-21.svs,1 +C3N-03488,C3N-03488-22.svs,1 +C3N-01337,C3N-01337-24.svs,0 +C3N-01337,C3N-01337-25.svs,0 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a/tasks/cptac_hnsc/OS/config.yaml b/tasks/cptac_hnsc/OS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..f47b6e443e98c6bf9c86090f98fb379984eb4344 --- /dev/null +++ b/tasks/cptac_hnsc/OS/config.yaml @@ -0,0 +1,20 @@ +task_type: survival +organ: head and neck + - head + - neck +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 + +metrics: + - cindex diff --git a/tasks/cptac_hnsc/OS/task.csv b/tasks/cptac_hnsc/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..0896ac918e77906b37831cdd96ccef57d9c2b31f --- /dev/null +++ b/tasks/cptac_hnsc/OS/task.csv @@ -0,0 +1,244 @@ +case_id,filename,OS_event,OS_days,OS +C3L-00997,C3L-00997-24.svs,0,442,1 +C3L-00997,C3L-00997-21.svs,0,442,1 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b/tasks/cptac_lscc/ARID1A_mutation/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..33753dc00dd27e1474e97b1f46fdb23e8b0194eb --- /dev/null +++ b/tasks/cptac_lscc/ARID1A_mutation/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant + diff --git a/tasks/cptac_lscc/ARID1A_mutation/task.csv b/tasks/cptac_lscc/ARID1A_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..6efe8b8b27eed38be8c9df160c0b67ec4986489e --- /dev/null +++ b/tasks/cptac_lscc/ARID1A_mutation/task.csv @@ -0,0 +1,305 @@ +case_id,filename,label +C3L-00927,C3L-00927-22.svs,0 +C3L-00927,C3L-00927-21.svs,0 +C3L-00927,C3L-00927-23.svs,0 +C3N-01194,C3N-01194-24.svs,0 +C3L-02649,C3L-02649-24.svs,0 +C3L-02649,C3L-02649-21.svs,0 +C3L-02649,C3L-02649-22.svs,0 +C3L-02649,C3L-02649-23.svs,0 +C3L-02649,C3L-02649-25.svs,0 +C3L-03961,C3L-03961-22.svs,0 +C3L-03961,C3L-03961-25.svs,0 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0000000000000000000000000000000000000000..6202f0a95f76863f630d5c2e39986c98db5becf6 --- /dev/null +++ b/tasks/cptac_lscc/Immune_class/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: lung +sample_col: case_id +label_dict: + 0: low + 1: medium + 2: high diff --git a/tasks/cptac_lscc/Immune_class/task.csv b/tasks/cptac_lscc/Immune_class/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..e13cc31d1f7546c4be7b8a378453732d6e213145 --- /dev/null +++ b/tasks/cptac_lscc/Immune_class/task.csv @@ -0,0 +1,305 @@ +case_id,filename,label +C3L-02168,C3L-02168-24.svs,1 +C3L-02168,C3L-02168-21.svs,1 +C3L-02168,C3L-02168-22.svs,1 +C3L-02168,C3L-02168-23.svs,1 +C3L-01663,C3L-01663-22.svs,1 +C3L-01663,C3L-01663-21.svs,1 +C3N-03886,C3N-03886-23.svs,0 +C3N-03886,C3N-03886-21.svs,0 +C3N-03886,C3N-03886-22.svs,0 +C3N-02300,C3N-02300-22.svs,1 +C3N-02300,C3N-02300-23.svs,1 +C3L-00081,C3L-00081-21.svs,0 +C3L-02968,C3L-02968-22.svs,2 +C3L-02951,C3L-02951-22.svs,2 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/dev/null +++ b/tasks/cptac_lscc/KEAP1_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: lung +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/cptac_lscc/KEAP1_mutation/task.csv b/tasks/cptac_lscc/KEAP1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..a30de39399b6aa0d31a27fcab6c7176612f6a304 --- /dev/null +++ b/tasks/cptac_lscc/KEAP1_mutation/task.csv @@ -0,0 +1,305 @@ +case_id,filename,label +C3L-04014,C3L-04014-22.svs,0 +C3L-04014,C3L-04014-21.svs,0 +C3L-04014,C3L-04014-23.svs,0 +C3L-04014,C3L-04014-24.svs,0 +C3L-04014,C3L-04014-25.svs,0 +C3L-03962,C3L-03962-23.svs,0 +C3L-03962,C3L-03962-21.svs,0 +C3L-03962,C3L-03962-22.svs,0 +C3L-03962,C3L-03962-24.svs,0 +C3L-03962,C3L-03962-25.svs,0 +C3N-00247,C3N-00247-22.svs,0 +C3N-00247,C3N-00247-21.svs,0 +C3N-00247,C3N-00247-23.svs,0 +C3L-02170,C3L-02170-23.svs,0 +C3L-02170,C3L-02170-21.svs,0 +C3L-02170,C3L-02170-22.svs,0 +C3L-01000,C3L-01000-24.svs,1 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b/tasks/cptac_luad/OS/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..2949508eec1f86b2982eb6a8b2193839f82cc8b8 --- /dev/null +++ b/tasks/cptac_luad/OS/config.yaml @@ -0,0 +1,18 @@ +task_type: survival +organ: lung +sample_col: case_id +task_col: OS +event_col: OS_event +time_col: OS_days +label_dict: + 0: Quartile 1, Event 0 + 1: Quartile 2, Event 0 + 2: Quartile 3, Event 0 + 3: Quartile 4, Event 0 + 4: Quartile 1, Event 1 + 5: Quartile 2, Event 1 + 6: Quartile 3, Event 1 + 7: Quartile 4, Event 1 + +metrics: + - cindex diff --git a/tasks/cptac_luad/OS/task.csv b/tasks/cptac_luad/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..b378c78d79f15d22651e369797f39c5536cc4a75 --- /dev/null +++ b/tasks/cptac_luad/OS/task.csv @@ -0,0 +1,314 @@ +case_id,filename,OS_event,OS_days,OS +C3L-00001,C3L-00001-21.svs,0,1837,3 +C3L-00009,C3L-00009-21.svs,1,577,6 +C3L-00144,C3L-00144-21.svs,0,578,2 +C3L-00279,C3L-00279-22.svs,0,606,2 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b/tasks/cptac_lung/subtype/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: lung +sample_col: case_id +label_dict: + 0: Lung adenocarcinoma (LUAD) + 1: Lung squamous cell carcinoma (LSCC) diff --git a/tasks/cptac_lung/subtype/task.csv b/tasks/cptac_lung/subtype/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..364a12c33875290d5168c7d745f3b138b237f966 --- /dev/null +++ b/tasks/cptac_lung/subtype/task.csv @@ -0,0 +1,605 @@ +case_id,filename,label +C3N-01823,C3N-01823-22.svs,0 +C3N-01823,C3N-01823-21.svs,0 +C3N-01823,C3N-01823-23.svs,0 +C3L-02969,C3L-02969-22.svs,1 +C3L-02969,C3L-02969-21.svs,1 +C3N-02729,C3N-02729-21.svs,0 +C3N-02729,C3N-02729-22.svs,0 +C3N-02582,C3N-02582-21.svs,0 +C3N-02582,C3N-02582-22.svs,0 +C3N-01016,C3N-01016-22.svs,0 +C3N-01016,C3N-01016-21.svs,0 +C3N-01016,C3N-01016-23.svs,0 +C3N-01016,C3N-01016-24.svs,0 +C3N-00555,C3N-00555-22.svs,1 +C3N-00555,C3N-00555-21.svs,1 +C3N-00555,C3N-00555-23.svs,1 +C3N-00555,C3N-00555-24.svs,1 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+++ b/tasks/cptac_ov/Immune_class/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: ovary +sample_col: case_id +label_dict: + 0: low + 1: medium + 2: high diff --git a/tasks/cptac_ov/Immune_class/task.csv b/tasks/cptac_ov/Immune_class/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..250d2814ed4525c7c7b5297ef2855deda9535ca6 --- /dev/null +++ b/tasks/cptac_ov/Immune_class/task.csv @@ -0,0 +1,161 @@ +case_id,filename,label +04OV027,04OV027-ff779c58-d254-4b87-a6dc-80df3f.svs,2 +04OV027,04OV027-da27ccf1-f7a8-4e93-aa32-796687.svs,2 +04OV027,04OV027-2224c03f-b7b1-4368-887e-2b4cdf.svs,2 +04OV027,04OV027-855ef263-049d-4607-aac6-00701e.svs,2 +04OV011,04OV011-40720b76-ea7a-4b88-a8d9-9f232d.svs,0 +04OV011,04OV011-00af6849-6be0-4e6d-8349-a5ee6e.svs,0 +04OV011,04OV011-42d0f533-aadf-4fc8-aecb-4294c5.svs,0 +04OV011,04OV011-a8853382-b726-4ce8-98d5-ca89df.svs,0 +01OV007,01OV007-9b90eb78-2f50-4aeb-b010-d642f9.svs,2 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+ +metrics: + - cindex diff --git a/tasks/cptac_pda/OS/task.csv b/tasks/cptac_pda/OS/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..94eac62aee14ed01f2c20e021f4f35e5b913943e --- /dev/null +++ b/tasks/cptac_pda/OS/task.csv @@ -0,0 +1,228 @@ +case_id,filename,OS_event,OS_days,OS +C3L-00017,C3L-00017-22.svs,0,426,1 +C3L-00017,C3L-00017-21.svs,0,426,1 +C3L-00017,C3L-00017-23.svs,0,426,1 +C3L-00589,C3L-00589-21.svs,0,1752,3 +C3L-00589,C3L-00589-22.svs,0,1752,3 +C3L-00598,C3L-00598-22.svs,1,422,5 +C3L-00598,C3L-00598-23.svs,1,422,5 +C3L-00598,C3L-00598-21.svs,1,422,5 +C3L-01037,C3L-01037-21.svs,1,300,5 +C3L-01037,C3L-01037-23.svs,1,300,5 +C3L-01328,C3L-01328-21.svs,0,271,0 +C3L-01328,C3L-01328-22.svs,0,271,0 +C3L-01598,C3L-01598-22.svs,1,913,7 +C3L-01598,C3L-01598-23.svs,1,913,7 +C3L-01687,C3L-01687-21.svs,1,376,5 +C3L-01687,C3L-01687-22.svs,1,376,5 +C3L-01687,C3L-01687-23.svs,1,376,5 +C3L-02610,C3L-02610-21.svs,1,190,4 +C3L-02610,C3L-02610-23.svs,1,190,4 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classification +organ: pancreas +sample_col: case_id +label_dict: + 0: wildtype + 1: mutant diff --git a/tasks/cptac_pda/SMAD4_mutation/task.csv b/tasks/cptac_pda/SMAD4_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..99ba7f18e5777d1dedf4f6a4697f41983629d4cc --- /dev/null +++ b/tasks/cptac_pda/SMAD4_mutation/task.csv @@ -0,0 +1,243 @@ +case_id,filename,label +C3N-00709,C3N-00709-21.svs,0 +C3N-02768,C3N-02768-21.svs,0 +C3N-02768,C3N-02768-22.svs,0 +C3N-01716,C3N-01716-23.svs,0 +C3N-03430,C3N-03430-22.svs,0 +C3L-01687,C3L-01687-21.svs,0 +C3L-01687,C3L-01687-22.svs,0 +C3L-01687,C3L-01687-23.svs,0 +C3L-01124,C3L-01124-21.svs,1 +C3L-01124,C3L-01124-22.svs,1 +C3N-01388,C3N-01388-23.svs,0 +C3N-01388,C3N-01388-22.svs,0 +C3N-02579,C3N-02579-22.svs,0 +C3N-02579,C3N-02579-21.svs,0 +C3L-01703,C3L-01703-27.svs,0 +C3L-01703,C3L-01703-28.svs,0 +C3L-01703,C3L-01703-26.svs,0 +C3N-00514,C3N-00514-21.svs,0 +C3N-00514,C3N-00514-22.svs,0 +C3L-03628,C3L-03628-26.svs,0 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@@ -0,0 +1,6 @@ +task_type: classification +organ: uterus +sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/cptac_ucec/CTNNB1_mutation/task.csv b/tasks/cptac_ucec/CTNNB1_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..907d8e4c8098c9fd330ce813b1dd911b044b08bb --- /dev/null +++ b/tasks/cptac_ucec/CTNNB1_mutation/task.csv @@ -0,0 +1,94 @@ +case_id,filename,label +C3L-01304,C3L-01304-21.svs,1 +C3N-00333,C3N-00333-23.svs,1 +C3N-01521,C3N-01521-21.svs,0 +C3L-01249,C3L-01249-21.svs,0 +C3N-01346,C3N-01346-23.svs,0 +C3L-00771,C3L-00771-21.svs,1 +C3N-00848,C3N-00848-22.svs,0 +C3N-01825,C3N-01825-23.svs,0 +C3L-00137,C3L-00137-22.svs,1 +C3L-01275,C3L-01275-21.svs,0 +C3N-01802,C3N-01802-21.svs,0 +C3N-00151,C3N-00151-23.svs,1 +C3L-00156,C3L-00156-22.svs,1 +C3L-01257,C3L-01257-21.svs,0 +C3L-01282,C3L-01282-21.svs,0 +C3N-00321,C3N-00321-21.svs,0 +C3L-00143,C3L-00143-21.svs,0 +C3L-00946,C3L-00946-21.svs,1 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+C3N-00379,C3N-00379-21.svs,1 +C3N-00850,C3N-00850-22.svs,0 +C3N-01520,C3N-01520-21.svs,0 +C3N-01217,C3N-01217-21.svs,0 +C3N-01212,C3N-01212-23.svs,0 +C3L-00961,C3L-00961-21.svs,1 +C3L-00090,C3L-00090-21.svs,0 +C3L-01311,C3L-01311-21.svs,1 +C3L-00918,C3L-00918-21.svs,0 diff --git a/tasks/cptac_ucec/Immune_class/config.yaml b/tasks/cptac_ucec/Immune_class/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..35bd5d7d4a9aa48e0df6418a2faa7a83266b5a65 --- /dev/null +++ b/tasks/cptac_ucec/Immune_class/config.yaml @@ -0,0 +1,7 @@ +task_type: classification +organ: uterus +sample_col: case_id +label_dict: + 0: low + 1: medium + 2: high diff --git a/tasks/cptac_ucec/Immune_class/task.csv b/tasks/cptac_ucec/Immune_class/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..57cbd3f81106d244802afccae3b1fa4d0ae41ef4 --- /dev/null +++ b/tasks/cptac_ucec/Immune_class/task.csv @@ -0,0 +1,95 @@ +case_id,filename,label +C3L-00449,C3L-00449-21.svs,2 +C3N-00880,C3N-00880-21.svs,1 +C3N-00322,C3N-00322-23.svs,0 +C3L-01311,C3L-01311-21.svs,2 +C3N-00383,C3N-00383-24.svs,0 +C3L-00769,C3L-00769-21.svs,0 +C3L-00586,C3L-00586-23.svs,2 +C3L-00918,C3L-00918-21.svs,2 +C3N-01217,C3N-01217-21.svs,0 +C3N-00333,C3N-00333-23.svs,1 +C3N-00866,C3N-00866-21.svs,0 +C3N-00847,C3N-00847-21.svs,0 +C3L-00946,C3L-00946-21.svs,1 +C3N-01349,C3N-01349-22.svs,2 +C3L-00771,C3L-00771-21.svs,1 +C3L-00008,C3L-00008-21.svs,0 +C3L-00780,C3L-00780-23.svs,2 +C3L-01925,C3L-01925-27.svs,0 +C3L-00139,C3L-00139-21.svs,0 +C3L-01256,C3L-01256-21.svs,2 +C3L-00358,C3L-00358-21.svs,1 +C3L-00905,C3L-00905-22.svs,0 +C3N-00335,C3N-00335-25.svs,2 +C3L-00601,C3L-00601-22.svs,0 +C3N-00323,C3N-00323-22.svs,1 +C3L-00090,C3L-00090-21.svs,0 +C3L-01257,C3L-01257-21.svs,2 +C3N-01537,C3N-01537-21.svs,2 +C3L-00156,C3L-00156-22.svs,1 +C3L-01744,C3L-01744-21.svs,1 +C3N-01219,C3N-01219-23.svs,2 +C3N-00388,C3N-00388-21.svs,1 +C3L-00605,C3L-00605-21.svs,1 +C3N-00389,C3N-00389-24.svs,2 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0000000000000000000000000000000000000000..0d60547783b5d87320ad5e863b5c55983531a313 --- /dev/null +++ b/tasks/cptac_ucec/PTEN_mutation/config.yaml @@ -0,0 +1,6 @@ +task_type: classification +organ: uterus +sample_col: case_id +label_dict: + 0: negative + 1: positive diff --git a/tasks/cptac_ucec/PTEN_mutation/task.csv b/tasks/cptac_ucec/PTEN_mutation/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..89872e8515278047d60710205f19f5a44254194f --- /dev/null +++ b/tasks/cptac_ucec/PTEN_mutation/task.csv @@ -0,0 +1,94 @@ +case_id,filename,label +C3N-01349,C3N-01349-22.svs,1 +C3N-00335,C3N-00335-25.svs,1 +C3N-00836,C3N-00836-22.svs,0 +C3L-00767,C3L-00767-21.svs,1 +C3N-00729,C3N-00729-23.svs,1 +C3L-00161,C3L-00161-21.svs,1 +C3L-01312,C3L-01312-21.svs,1 +C3L-01925,C3L-01925-27.svs,0 +C3L-00770,C3L-00770-21.svs,1 +C3N-00848,C3N-00848-22.svs,1 +C3N-01003,C3N-01003-21.svs,0 +C3L-00780,C3L-00780-23.svs,1 +C3N-00339,C3N-00339-22.svs,1 +C3N-00340,C3N-00340-23.svs,0 +C3N-00321,C3N-00321-21.svs,1 +C3N-01212,C3N-01212-23.svs,1 +C3N-00880,C3N-00880-21.svs,1 +C3N-00379,C3N-00379-21.svs,1 +C3L-00769,C3L-00769-21.svs,1 +C3L-00586,C3L-00586-23.svs,1 +C3N-00386,C3N-00386-22.svs,1 +C3L-00921,C3L-00921-22.svs,1 +C3L-00008,C3L-00008-21.svs,1 +C3N-00734,C3N-00734-21.svs,1 +C3L-00601,C3L-00601-22.svs,1 +C3L-01311,C3L-01311-21.svs,1 +C3L-01304,C3L-01304-21.svs,1 +C3L-01249,C3L-01249-21.svs,1 +C3N-00333,C3N-00333-23.svs,1 +C3N-00866,C3N-00866-21.svs,1 +C3L-00961,C3L-00961-21.svs,1 +C3L-00963,C3L-00963-21.svs,0 +C3N-00326,C3N-00326-21.svs,1 +C3L-01248,C3L-01248-21.svs,1 +C3N-00337,C3N-00337-23.svs,1 +C3L-00032,C3L-00032-21.svs,1 +C3N-01802,C3N-01802-21.svs,0 +C3N-01219,C3N-01219-23.svs,1 +C3L-01246,C3L-01246-21.svs,0 +C3N-00847,C3N-00847-21.svs,1 +C3L-00413,C3L-00413-21.svs,1 +C3L-00006,C3L-00006-21.svs,1 +C3L-00098,C3L-00098-22.svs,0 +C3N-00200,C3N-00200-22.svs,1 +C3N-01217,C3N-01217-21.svs,1 +C3L-00771,C3L-00771-21.svs,1 +C3L-00918,C3L-00918-21.svs,1 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+C3N-01520,C3N-01520-21.svs,1 +C3L-00942,C3L-00942-21.svs,1 +C3N-01825,C3N-01825-23.svs,0 +C3L-00361,C3L-00361-21.svs,0 +C3L-00563,C3L-00563-23.svs,1 +C3N-00322,C3N-00322-23.svs,1 +C3L-00090,C3L-00090-21.svs,1 +C3N-00328,C3N-00328-25.svs,1 +C3N-00334,C3N-00334-22.svs,1 +C3L-01257,C3L-01257-21.svs,1 +C3L-01256,C3L-01256-21.svs,1 +C3L-00137,C3L-00137-22.svs,1 +C3L-00781,C3L-00781-24.svs,1 diff --git a/tasks/dhmc_kidney/morphological_subtyping/config.yaml b/tasks/dhmc_kidney/morphological_subtyping/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..63b0e49281834e63cf0cbdc4562ed04abde1dfae --- /dev/null +++ b/tasks/dhmc_kidney/morphological_subtyping/config.yaml @@ -0,0 +1,9 @@ +task_type: classification +organ: kidney +sample_col: filename +label_dict: + 0: Benign + 1: Chromophobe + 2: Clearcell + 3: Oncocytoma + 4: Papillary diff --git a/tasks/dhmc_kidney/morphological_subtyping/task.csv b/tasks/dhmc_kidney/morphological_subtyping/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..382ca837af151db28858ca34db570797ed06321c --- /dev/null +++ b/tasks/dhmc_kidney/morphological_subtyping/task.csv @@ -0,0 +1,564 @@ +filename,case_id,label +DHMC_KIDNEY_0001.png,DHMC_KIDNEY_0001,0 +DHMC_KIDNEY_0002.png,DHMC_KIDNEY_0002,0 +DHMC_KIDNEY_0003.png,DHMC_KIDNEY_0003,0 +DHMC_KIDNEY_0004.png,DHMC_KIDNEY_0004,0 +DHMC_KIDNEY_0005.png,DHMC_KIDNEY_0005,0 +DHMC_KIDNEY_0006.png,DHMC_KIDNEY_0006,1 +DHMC_KIDNEY_0007.png,DHMC_KIDNEY_0007,1 +DHMC_KIDNEY_0008.png,DHMC_KIDNEY_0008,1 +DHMC_KIDNEY_0009.png,DHMC_KIDNEY_0009,1 +DHMC_KIDNEY_0010.png,DHMC_KIDNEY_0010,1 +DHMC_KIDNEY_0011.png,DHMC_KIDNEY_0011,2 +DHMC_KIDNEY_0012.png,DHMC_KIDNEY_0012,2 +DHMC_KIDNEY_0013.png,DHMC_KIDNEY_0013,2 +DHMC_KIDNEY_0014.png,DHMC_KIDNEY_0014,2 +DHMC_KIDNEY_0015.png,DHMC_KIDNEY_0015,2 +DHMC_KIDNEY_0016.png,DHMC_KIDNEY_0016,3 +DHMC_KIDNEY_0017.png,DHMC_KIDNEY_0017,3 +DHMC_KIDNEY_0018.png,DHMC_KIDNEY_0018,3 +DHMC_KIDNEY_0019.png,DHMC_KIDNEY_0019,4 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+DHMC_KIDNEY_0548.png,DHMC_KIDNEY_0548,4 +DHMC_KIDNEY_0549.png,DHMC_KIDNEY_0549,4 +DHMC_KIDNEY_0550.png,DHMC_KIDNEY_0550,4 +DHMC_KIDNEY_0551.png,DHMC_KIDNEY_0551,4 +DHMC_KIDNEY_0552.png,DHMC_KIDNEY_0552,4 +DHMC_KIDNEY_0553.png,DHMC_KIDNEY_0553,4 +DHMC_KIDNEY_0554.png,DHMC_KIDNEY_0554,4 +DHMC_KIDNEY_0555.png,DHMC_KIDNEY_0555,4 +DHMC_KIDNEY_0556.png,DHMC_KIDNEY_0556,4 +DHMC_KIDNEY_0557.png,DHMC_KIDNEY_0557,4 +DHMC_KIDNEY_0558.png,DHMC_KIDNEY_0558,4 +DHMC_KIDNEY_0559.png,DHMC_KIDNEY_0559,4 +DHMC_KIDNEY_0560.png,DHMC_KIDNEY_0560,4 +DHMC_KIDNEY_0561.png,DHMC_KIDNEY_0561,4 +DHMC_KIDNEY_0562.png,DHMC_KIDNEY_0562,4 +DHMC_KIDNEY_0563.png,DHMC_KIDNEY_0563,4 diff --git a/tasks/dhmc_luad/histologic_pattern/config.yaml b/tasks/dhmc_luad/histologic_pattern/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..00a86f0ece9f120967a559a4fe3d8b629c0b1309 --- /dev/null +++ b/tasks/dhmc_luad/histologic_pattern/config.yaml @@ -0,0 +1,9 @@ +task_type: classification +organ: lung +sample_col: filename +label_dict: + 0: Acinar + 1: Lepidic + 2: Micropapillary + 3: Papillary + 4: Solid diff --git a/tasks/dhmc_luad/histologic_pattern/task.csv b/tasks/dhmc_luad/histologic_pattern/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..c64105c70a5a450907e88654e3adf708415f8cc0 --- /dev/null +++ b/tasks/dhmc_luad/histologic_pattern/task.csv @@ -0,0 +1,144 @@ +case_id,filename,label +DHMC_0001,DHMC_0001.tif,4 +DHMC_0002,DHMC_0002.tif,4 +DHMC_0003,DHMC_0003.tif,4 +DHMC_0004,DHMC_0004.tif,4 +DHMC_0005,DHMC_0005.tif,1 +DHMC_0006,DHMC_0006.tif,0 +DHMC_0007,DHMC_0007.tif,0 +DHMC_0008,DHMC_0008.tif,4 +DHMC_0009,DHMC_0009.tif,0 +DHMC_0010,DHMC_0010.tif,0 +DHMC_0011,DHMC_0011.tif,0 +DHMC_0012,DHMC_0012.tif,4 +DHMC_0013,DHMC_0013.tif,4 +DHMC_0014,DHMC_0014.tif,0 +DHMC_0015,DHMC_0015.tif,0 +DHMC_0016,DHMC_0016.tif,0 +DHMC_0017,DHMC_0017.tif,4 +DHMC_0018,DHMC_0018.tif,1 +DHMC_0019,DHMC_0019.tif,1 +DHMC_0020,DHMC_0020.tif,2 +DHMC_0021,DHMC_0021.tif,4 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+DHMC_0133,DHMC_0133.tif,0 +DHMC_0134,DHMC_0134.tif,0 +DHMC_0135,DHMC_0135.tif,3 +DHMC_0136,DHMC_0136.tif,0 +DHMC_0137,DHMC_0137.tif,2 +DHMC_0138,DHMC_0138.tif,0 +DHMC_0139,DHMC_0139.tif,2 +DHMC_0140,DHMC_0140.tif,4 +DHMC_0141,DHMC_0141.tif,3 +DHMC_0142,DHMC_0142.tif,0 +DHMC_0143,DHMC_0143.tif,4 diff --git a/tasks/ebrains/diagnosis/config.yaml b/tasks/ebrains/diagnosis/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..6ec06e25776a46ad20a3d68c37cfd269e278bd9d --- /dev/null +++ b/tasks/ebrains/diagnosis/config.yaml @@ -0,0 +1,34 @@ +task_type: classification +organ: brain +sample_col: filename +label_dict: + 0: "Glioblastoma, IDH-wildtype" + 1: "Gliosarcoma" + 2: "Transitional meningioma" + 3: "Anaplastic meningioma" + 4: "Pituitary adenoma" + 5: "Oligodendroglioma, IDH-mutant and 1p/19q codeleted" + 6: "Haemangioma" + 7: "Ganglioglioma" + 8: "Pilocytic astrocytoma" + 9: "Schwannoma" + 10: "Anaplastic oligodendroglioma, IDH-mutant and 1p/19q codeleted" + 11: "Fibrous meningioma" + 12: "Anaplastic astrocytoma, IDH-wildtype" + 13: "Angiomatous meningioma" + 14: "Haemangioblastoma" + 15: "Adamantinomatous craniopharyngioma" + 16: "Anaplastic astrocytoma, IDH-mutant" + 17: "Glioblastoma, IDH-mutant" + 18: "Diffuse astrocytoma, IDH-mutant" + 19: "Ependymoma" + 20: "Anaplastic ependymoma" + 21: "Atypical meningioma" + 22: "Metastatic tumours" + 23: "Meningothelial meningioma" + 24: "Langerhans cell histiocytosis" + 25: "Diffuse large B-cell lymphoma of the CNS" + 26: "Secretory meningioma" + 27: "Haemangiopericytoma" + 28: "Lipoma" + 29: "Medulloblastoma, non-WNT/non-SHH" diff --git a/tasks/ebrains/diagnosis/task.csv b/tasks/ebrains/diagnosis/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..2f03c23580f48014543898d2bcf3f4aa2c6e2fac --- /dev/null +++ b/tasks/ebrains/diagnosis/task.csv @@ -0,0 +1,2320 @@ +case_id,filename,label +patient_0,a1965749-357f-11eb-801a-001a7dda7111.ndpi,14 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non-meningothelial tumours involving the CNS" + 4: "Glioneuronal and neuronal tumours" + 5: "Circumscribed astrocytic gliomas" + 6: "Cranial and paraspinal nerve tumours" + 7: "Paediatric-type diffuse low-grade gliomas " + 8: "Ependymal tumours" + 9: "Metastatic tumours" + 10: "Haematolymphoid tumours involving the CNS" + 11: "Embryonal tumours" diff --git a/tasks/ebrains/diagnosis_group/task.csv b/tasks/ebrains/diagnosis_group/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..32bd194248325eaa961dea3b239b905c9bf21dc4 --- /dev/null +++ b/tasks/ebrains/diagnosis_group/task.csv @@ -0,0 +1,2320 @@ +case_id,filename,label +patient_0,a1965749-357f-11eb-801a-001a7dda7111.ndpi,0 +patient_8,a195e1cf-357f-11eb-a906-001a7dda7111.ndpi,0 +patient_10,a195bacf-357f-11eb-ae3d-001a7dda7111.ndpi,0 +patient_10,a196a55e-357f-11eb-8adc-001a7dda7111.ndpi,0 +patient_16,a1982cc4-357f-11eb-9510-001a7dda7111.ndpi,0 +patient_19,a196f394-357f-11eb-b61d-001a7dda7111.ndpi,0 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+patient_2588,a197b6d0-357f-11eb-a5d9-001a7dda7111.ndpi,3 diff --git a/tasks/imp/grade/config.yaml b/tasks/imp/grade/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..67a1850cd067eb9eab895ffdca7e6ef2e8106a99 --- /dev/null +++ b/tasks/imp/grade/config.yaml @@ -0,0 +1,10 @@ +task_type: classification +organ: colorectum +sample_col: filename +label_dict: + 0: "0 (non-neoplastic)" + 1: "1 (low-grade)" + 2: "2 (high-grade)" + +metrics: + - weighted_kappa \ No newline at end of file diff --git a/tasks/imp/grade/task.csv b/tasks/imp/grade/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..18d9a1e2fbc7efe726f57772032b0e864f14c686 --- /dev/null +++ b/tasks/imp/grade/task.csv @@ -0,0 +1,5334 @@ +case_id,filename,label +CRC_0000,CRC_0000.svs,2 +CRC_0001,CRC_0001.svs,1 +CRC_0002,CRC_0002.svs,1 +CRC_0003,CRC_0003.svs,1 +CRC_0004,CRC_0004.svs,0 +CRC_0005,CRC_0005.svs,0 +CRC_0006,CRC_0006.svs,0 +CRC_0007,CRC_0007.svs,2 +CRC_0008,CRC_0008.svs,1 +CRC_0009,CRC_0009.svs,1 +CRC_0010,CRC_0010.svs,2 +CRC_0011,CRC_0011.svs,1 +CRC_0012,CRC_0012.svs,0 +CRC_0013,CRC_0013.svs,0 +CRC_0014,CRC_0014.svs,2 +CRC_0015,CRC_0015.svs,0 +CRC_0016,CRC_0016.svs,1 +CRC_0017,CRC_0017.svs,0 +CRC_0018,CRC_0018.svs,2 +CRC_0019,CRC_0019.svs,0 +CRC_0020,CRC_0020.svs,0 +CRC_0021,CRC_0021.svs,2 +CRC_0022,CRC_0022.svs,1 +CRC_0023,CRC_0023.svs,1 +CRC_0024,CRC_0024.svs,2 +CRC_0025,CRC_0025.svs,1 +CRC_0026,CRC_0026.svs,2 +CRC_0027,CRC_0027.svs,1 +CRC_0028,CRC_0028.svs,1 +CRC_0029,CRC_0029.svs,1 +CRC_0030,CRC_0030.svs,0 +CRC_0031,CRC_0031.svs,0 +CRC_0032,CRC_0032.svs,2 +CRC_0033,CRC_0033.svs,2 +CRC_0034,CRC_0034.svs,1 +CRC_0035,CRC_0035.svs,2 +CRC_0036,CRC_0036.svs,0 +CRC_0037,CRC_0037.svs,0 +CRC_0038,CRC_0038.svs,0 +CRC_0039,CRC_0039.svs,1 +CRC_0040,CRC_0040.svs,1 +CRC_0041,CRC_0041.svs,1 +CRC_0042,CRC_0042.svs,1 +CRC_0043,CRC_0043.svs,0 +CRC_0044,CRC_0044.svs,2 +CRC_0045,CRC_0045.svs,1 +CRC_0046,CRC_0046.svs,1 +CRC_0047,CRC_0047.svs,1 +CRC_0048,CRC_0048.svs,1 +CRC_0049,CRC_0049.svs,0 +CRC_0050,CRC_0050.svs,0 +CRC_0051,CRC_0051.svs,1 +CRC_0052,CRC_0052.svs,2 +CRC_0053,CRC_0053.svs,2 +CRC_0054,CRC_0054.svs,1 +CRC_0055,CRC_0055.svs,1 +CRC_0056,CRC_0056.svs,1 +CRC_0057,CRC_0057.svs,1 +CRC_0058,CRC_0058.svs,1 +CRC_0059,CRC_0059.svs,0 +CRC_0060,CRC_0060.svs,2 +CRC_0061,CRC_0061.svs,0 +CRC_0062,CRC_0062.svs,1 +CRC_0063,CRC_0063.svs,1 +CRC_0064,CRC_0064.svs,2 +CRC_0065,CRC_0065.svs,0 +CRC_0066,CRC_0066.svs,2 +CRC_0067,CRC_0067.svs,1 +CRC_0068,CRC_0068.svs,1 +CRC_0069,CRC_0069.svs,1 +CRC_0070,CRC_0070.svs,2 +CRC_0071,CRC_0071.svs,2 +CRC_0072,CRC_0072.svs,0 +CRC_0073,CRC_0073.svs,1 +CRC_0074,CRC_0074.svs,0 +CRC_0075,CRC_0075.svs,0 +CRC_0076,CRC_0076.svs,1 +CRC_0077,CRC_0077.svs,1 +CRC_0078,CRC_0078.svs,0 +CRC_0079,CRC_0079.svs,1 +CRC_0080,CRC_0080.svs,1 +CRC_0081,CRC_0081.svs,0 +CRC_0082,CRC_0082.svs,1 +CRC_0083,CRC_0083.svs,2 +CRC_0084,CRC_0084.svs,0 +CRC_0085,CRC_0085.svs,2 +CRC_0086,CRC_0086.svs,1 +CRC_0087,CRC_0087.svs,2 +CRC_0088,CRC_0088.svs,2 +CRC_0089,CRC_0089.svs,0 +CRC_0090,CRC_0090.svs,2 +CRC_0091,CRC_0091.svs,2 +CRC_0092,CRC_0092.svs,2 +CRC_0093,CRC_0093.svs,1 +CRC_0094,CRC_0094.svs,1 +CRC_0095,CRC_0095.svs,1 +CRC_0096,CRC_0096.svs,1 +CRC_0097,CRC_0097.svs,1 +CRC_0098,CRC_0098.svs,0 +CRC_0099,CRC_0099.svs,1 +CRC_0100,CRC_0100.svs,1 +CRC_0101,CRC_0101.svs,1 +CRC_0102,CRC_0102.svs,0 +CRC_0103,CRC_0103.svs,0 +CRC_0104,CRC_0104.svs,1 +CRC_0105,CRC_0105.svs,1 +CRC_0106,CRC_0106.svs,2 +CRC_0107,CRC_0107.svs,0 +CRC_0108,CRC_0108.svs,2 +CRC_0109,CRC_0109.svs,1 +CRC_0110,CRC_0110.svs,1 +CRC_0111,CRC_0111.svs,1 +CRC_0112,CRC_0112.svs,1 +CRC_0113,CRC_0113.svs,1 +CRC_0114,CRC_0114.svs,2 +CRC_0115,CRC_0115.svs,0 +CRC_0116,CRC_0116.svs,1 +CRC_0117,CRC_0117.svs,2 +CRC_0118,CRC_0118.svs,1 +CRC_0119,CRC_0119.svs,0 +CRC_0120,CRC_0120.svs,0 +CRC_0121,CRC_0121.svs,0 +CRC_0122,CRC_0122.svs,1 +CRC_0123,CRC_0123.svs,2 +CRC_0124,CRC_0124.svs,0 +CRC_0125,CRC_0125.svs,1 +CRC_0126,CRC_0126.svs,2 +CRC_0127,CRC_0127.svs,0 +CRC_0128,CRC_0128.svs,1 +CRC_0129,CRC_0129.svs,2 +CRC_0130,CRC_0130.svs,2 +CRC_0131,CRC_0131.svs,1 +CRC_0132,CRC_0132.svs,2 +CRC_0133,CRC_0133.svs,0 +CRC_0134,CRC_0134.svs,0 +CRC_0135,CRC_0135.svs,0 +CRC_0136,CRC_0136.svs,0 +CRC_0137,CRC_0137.svs,1 +CRC_0138,CRC_0138.svs,1 +CRC_0139,CRC_0139.svs,1 +CRC_0140,CRC_0140.svs,1 +CRC_0141,CRC_0141.svs,1 +CRC_0142,CRC_0142.svs,2 +CRC_0143,CRC_0143.svs,1 +CRC_0144,CRC_0144.svs,0 +CRC_0145,CRC_0145.svs,0 +CRC_0146,CRC_0146.svs,0 +CRC_0147,CRC_0147.svs,0 +CRC_0148,CRC_0148.svs,1 +CRC_0149,CRC_0149.svs,1 +CRC_0150,CRC_0150.svs,0 +CRC_0151,CRC_0151.svs,0 +CRC_0152,CRC_0152.svs,2 +CRC_0153,CRC_0153.svs,1 +CRC_0154,CRC_0154.svs,2 +CRC_0155,CRC_0155.svs,0 +CRC_0156,CRC_0156.svs,1 +CRC_0157,CRC_0157.svs,2 +CRC_0158,CRC_0158.svs,2 +CRC_0159,CRC_0159.svs,1 +CRC_0160,CRC_0160.svs,0 +CRC_0161,CRC_0161.svs,1 +CRC_0162,CRC_0162.svs,0 +CRC_0163,CRC_0163.svs,0 +CRC_0164,CRC_0164.svs,2 +CRC_0165,CRC_0165.svs,1 +CRC_0166,CRC_0166.svs,1 +CRC_0167,CRC_0167.svs,1 +CRC_0168,CRC_0168.svs,2 +CRC_0169,CRC_0169.svs,0 +CRC_0170,CRC_0170.svs,0 +CRC_0171,CRC_0171.svs,0 +CRC_0172,CRC_0172.svs,1 +CRC_0173,CRC_0173.svs,1 +CRC_0174,CRC_0174.svs,1 +CRC_0175,CRC_0175.svs,1 +CRC_0176,CRC_0176.svs,1 +CRC_0177,CRC_0177.svs,1 +CRC_0178,CRC_0178.svs,0 +CRC_0179,CRC_0179.svs,0 +CRC_0180,CRC_0180.svs,2 +CRC_0181,CRC_0181.svs,0 +CRC_0182,CRC_0182.svs,2 +CRC_0183,CRC_0183.svs,1 +CRC_0184,CRC_0184.svs,1 +CRC_0185,CRC_0185.svs,2 +CRC_0186,CRC_0186.svs,1 +CRC_0187,CRC_0187.svs,1 +CRC_0188,CRC_0188.svs,1 +CRC_0189,CRC_0189.svs,2 +CRC_0190,CRC_0190.svs,1 +CRC_0191,CRC_0191.svs,1 +CRC_0192,CRC_0192.svs,0 +CRC_0193,CRC_0193.svs,1 +CRC_0194,CRC_0194.svs,1 +CRC_0195,CRC_0195.svs,1 +CRC_0196,CRC_0196.svs,2 +CRC_0197,CRC_0197.svs,2 +CRC_0198,CRC_0198.svs,2 +CRC_0199,CRC_0199.svs,1 +CRC_0200,CRC_0200.svs,0 +CRC_0201,CRC_0201.svs,1 +CRC_0202,CRC_0202.svs,1 +CRC_0203,CRC_0203.svs,0 +CRC_0204,CRC_0204.svs,1 +CRC_0205,CRC_0205.svs,0 +CRC_0206,CRC_0206.svs,1 +CRC_0207,CRC_0207.svs,1 +CRC_0208,CRC_0208.svs,0 +CRC_0209,CRC_0209.svs,0 +CRC_0210,CRC_0210.svs,1 +CRC_0211,CRC_0211.svs,0 +CRC_0212,CRC_0212.svs,0 +CRC_0213,CRC_0213.svs,1 +CRC_0214,CRC_0214.svs,0 +CRC_0215,CRC_0215.svs,0 +CRC_0216,CRC_0216.svs,1 +CRC_0217,CRC_0217.svs,1 +CRC_0218,CRC_0218.svs,1 +CRC_0219,CRC_0219.svs,1 +CRC_0220,CRC_0220.svs,1 +CRC_0221,CRC_0221.svs,0 +CRC_0222,CRC_0222.svs,1 +CRC_0223,CRC_0223.svs,1 +CRC_0224,CRC_0224.svs,1 +CRC_0225,CRC_0225.svs,2 +CRC_0226,CRC_0226.svs,0 +CRC_0227,CRC_0227.svs,1 +CRC_0228,CRC_0228.svs,2 +CRC_0229,CRC_0229.svs,1 +CRC_0230,CRC_0230.svs,0 +CRC_0231,CRC_0231.svs,2 +CRC_0232,CRC_0232.svs,1 +CRC_0233,CRC_0233.svs,1 +CRC_0234,CRC_0234.svs,1 +CRC_0235,CRC_0235.svs,1 +CRC_0236,CRC_0236.svs,0 +CRC_0237,CRC_0237.svs,1 +CRC_0238,CRC_0238.svs,1 +CRC_0239,CRC_0239.svs,2 +CRC_0240,CRC_0240.svs,1 +CRC_0241,CRC_0241.svs,0 +CRC_0242,CRC_0242.svs,0 +CRC_0243,CRC_0243.svs,1 +CRC_0244,CRC_0244.svs,2 +CRC_0245,CRC_0245.svs,0 +CRC_0246,CRC_0246.svs,0 +CRC_0247,CRC_0247.svs,0 +CRC_0248,CRC_0248.svs,2 +CRC_0249,CRC_0249.svs,1 +CRC_0250,CRC_0250.svs,0 +CRC_0251,CRC_0251.svs,1 +CRC_0252,CRC_0252.svs,1 +CRC_0253,CRC_0253.svs,0 +CRC_0254,CRC_0254.svs,0 +CRC_0255,CRC_0255.svs,1 +CRC_0256,CRC_0256.svs,1 +CRC_0257,CRC_0257.svs,1 +CRC_0258,CRC_0258.svs,0 +CRC_0259,CRC_0259.svs,2 +CRC_0260,CRC_0260.svs,2 +CRC_0261,CRC_0261.svs,1 +CRC_0262,CRC_0262.svs,0 +CRC_0263,CRC_0263.svs,2 +CRC_0264,CRC_0264.svs,1 +CRC_0265,CRC_0265.svs,1 +CRC_0266,CRC_0266.svs,1 +CRC_0267,CRC_0267.svs,1 +CRC_0268,CRC_0268.svs,0 +CRC_0269,CRC_0269.svs,0 +CRC_0270,CRC_0270.svs,2 +CRC_0271,CRC_0271.svs,1 +CRC_0272,CRC_0272.svs,1 +CRC_0273,CRC_0273.svs,2 +CRC_0274,CRC_0274.svs,2 +CRC_0275,CRC_0275.svs,1 +CRC_0276,CRC_0276.svs,2 +CRC_0277,CRC_0277.svs,0 +CRC_0278,CRC_0278.svs,0 +CRC_0279,CRC_0279.svs,2 +CRC_0280,CRC_0280.svs,2 +CRC_0281,CRC_0281.svs,2 +CRC_0282,CRC_0282.svs,1 +CRC_0283,CRC_0283.svs,2 +CRC_0284,CRC_0284.svs,2 +CRC_0285,CRC_0285.svs,1 +CRC_0286,CRC_0286.svs,1 +CRC_0287,CRC_0287.svs,0 +CRC_0288,CRC_0288.svs,2 +CRC_0289,CRC_0289.svs,1 +CRC_0290,CRC_0290.svs,0 +CRC_0291,CRC_0291.svs,2 +CRC_0292,CRC_0292.svs,1 +CRC_0293,CRC_0293.svs,0 +CRC_0294,CRC_0294.svs,1 +CRC_0295,CRC_0295.svs,1 +CRC_0296,CRC_0296.svs,1 +CRC_0297,CRC_0297.svs,1 +CRC_0298,CRC_0298.svs,1 +CRC_0299,CRC_0299.svs,2 +CRC_0300,CRC_0300.svs,1 +CRC_0301,CRC_0301.svs,2 +CRC_0302,CRC_0302.svs,1 +CRC_0303,CRC_0303.svs,1 +CRC_0304,CRC_0304.svs,1 +CRC_0305,CRC_0305.svs,0 +CRC_0306,CRC_0306.svs,0 +CRC_0307,CRC_0307.svs,0 +CRC_0308,CRC_0308.svs,0 +CRC_0309,CRC_0309.svs,2 +CRC_0310,CRC_0310.svs,1 +CRC_0311,CRC_0311.svs,2 +CRC_0312,CRC_0312.svs,0 +CRC_0313,CRC_0313.svs,0 +CRC_0314,CRC_0314.svs,1 +CRC_0315,CRC_0315.svs,0 +CRC_0316,CRC_0316.svs,1 +CRC_0317,CRC_0317.svs,1 +CRC_0318,CRC_0318.svs,1 +CRC_0319,CRC_0319.svs,1 +CRC_0320,CRC_0320.svs,2 +CRC_0321,CRC_0321.svs,2 +CRC_0322,CRC_0322.svs,1 +CRC_0323,CRC_0323.svs,2 +CRC_0324,CRC_0324.svs,2 +CRC_0325,CRC_0325.svs,1 +CRC_0326,CRC_0326.svs,0 +CRC_0327,CRC_0327.svs,2 +CRC_0328,CRC_0328.svs,0 +CRC_0329,CRC_0329.svs,2 +CRC_0330,CRC_0330.svs,2 +CRC_0331,CRC_0331.svs,1 +CRC_0332,CRC_0332.svs,1 +CRC_0333,CRC_0333.svs,1 +CRC_0334,CRC_0334.svs,1 +CRC_0335,CRC_0335.svs,1 +CRC_0336,CRC_0336.svs,1 +CRC_0337,CRC_0337.svs,1 +CRC_0338,CRC_0338.svs,1 +CRC_0339,CRC_0339.svs,1 +CRC_0340,CRC_0340.svs,1 +CRC_0341,CRC_0341.svs,0 +CRC_0342,CRC_0342.svs,0 +CRC_0343,CRC_0343.svs,1 +CRC_0344,CRC_0344.svs,0 +CRC_0345,CRC_0345.svs,1 +CRC_0346,CRC_0346.svs,1 +CRC_0347,CRC_0347.svs,1 +CRC_0348,CRC_0348.svs,2 +CRC_0349,CRC_0349.svs,1 +CRC_0350,CRC_0350.svs,2 +CRC_0351,CRC_0351.svs,1 +CRC_0352,CRC_0352.svs,0 +CRC_0353,CRC_0353.svs,2 +CRC_0354,CRC_0354.svs,2 +CRC_0355,CRC_0355.svs,1 +CRC_0356,CRC_0356.svs,1 +CRC_0357,CRC_0357.svs,1 +CRC_0358,CRC_0358.svs,1 +CRC_0359,CRC_0359.svs,0 +CRC_0360,CRC_0360.svs,0 +CRC_0361,CRC_0361.svs,1 +CRC_0362,CRC_0362.svs,1 +CRC_0363,CRC_0363.svs,0 +CRC_0364,CRC_0364.svs,1 +CRC_0365,CRC_0365.svs,0 +CRC_0366,CRC_0366.svs,0 +CRC_0367,CRC_0367.svs,2 +CRC_0368,CRC_0368.svs,1 +CRC_0369,CRC_0369.svs,1 +CRC_0370,CRC_0370.svs,1 +CRC_0371,CRC_0371.svs,0 +CRC_0372,CRC_0372.svs,1 +CRC_0373,CRC_0373.svs,0 +CRC_0374,CRC_0374.svs,2 +CRC_0375,CRC_0375.svs,0 +CRC_0376,CRC_0376.svs,0 +CRC_0377,CRC_0377.svs,1 +CRC_0378,CRC_0378.svs,1 +CRC_0379,CRC_0379.svs,1 +CRC_0380,CRC_0380.svs,1 +CRC_0381,CRC_0381.svs,0 +CRC_0382,CRC_0382.svs,2 +CRC_0383,CRC_0383.svs,2 +CRC_0384,CRC_0384.svs,1 +CRC_0385,CRC_0385.svs,2 +CRC_0386,CRC_0386.svs,1 +CRC_0387,CRC_0387.svs,1 +CRC_0388,CRC_0388.svs,1 +CRC_0389,CRC_0389.svs,1 +CRC_0390,CRC_0390.svs,1 +CRC_0391,CRC_0391.svs,0 +CRC_0392,CRC_0392.svs,1 +CRC_0393,CRC_0393.svs,1 +CRC_0394,CRC_0394.svs,2 +CRC_0395,CRC_0395.svs,0 +CRC_0396,CRC_0396.svs,1 +CRC_0397,CRC_0397.svs,1 +CRC_0398,CRC_0398.svs,0 +CRC_0399,CRC_0399.svs,2 +CRC_0400,CRC_0400.svs,1 +CRC_0401,CRC_0401.svs,1 +CRC_0402,CRC_0402.svs,1 +CRC_0403,CRC_0403.svs,1 +CRC_0404,CRC_0404.svs,1 +CRC_0405,CRC_0405.svs,1 +CRC_0406,CRC_0406.svs,0 +CRC_0407,CRC_0407.svs,1 +CRC_0408,CRC_0408.svs,2 +CRC_0409,CRC_0409.svs,1 +CRC_0410,CRC_0410.svs,1 +CRC_0411,CRC_0411.svs,1 +CRC_0412,CRC_0412.svs,2 +CRC_0413,CRC_0413.svs,1 +CRC_0414,CRC_0414.svs,1 +CRC_0415,CRC_0415.svs,0 +CRC_0416,CRC_0416.svs,2 +CRC_0417,CRC_0417.svs,2 +CRC_0418,CRC_0418.svs,0 +CRC_0419,CRC_0419.svs,0 +CRC_0420,CRC_0420.svs,1 +CRC_0421,CRC_0421.svs,1 +CRC_0422,CRC_0422.svs,0 +CRC_0423,CRC_0423.svs,0 +CRC_0424,CRC_0424.svs,1 +CRC_0425,CRC_0425.svs,1 +CRC_0426,CRC_0426.svs,0 +CRC_0427,CRC_0427.svs,1 +CRC_0428,CRC_0428.svs,0 +CRC_0429,CRC_0429.svs,1 +CRC_0430,CRC_0430.svs,2 +CRC_0431,CRC_0431.svs,2 +CRC_0432,CRC_0432.svs,0 +CRC_0433,CRC_0433.svs,1 +CRC_0434,CRC_0434.svs,0 +CRC_0435,CRC_0435.svs,2 +CRC_0436,CRC_0436.svs,1 +CRC_0437,CRC_0437.svs,1 +CRC_0438,CRC_0438.svs,1 +CRC_0439,CRC_0439.svs,1 +CRC_0440,CRC_0440.svs,1 +CRC_0441,CRC_0441.svs,0 +CRC_0442,CRC_0442.svs,0 +CRC_0443,CRC_0443.svs,1 +CRC_0444,CRC_0444.svs,1 +CRC_0445,CRC_0445.svs,1 +CRC_0446,CRC_0446.svs,1 +CRC_0447,CRC_0447.svs,1 +CRC_0448,CRC_0448.svs,2 +CRC_0449,CRC_0449.svs,1 +CRC_0450,CRC_0450.svs,1 +CRC_0451,CRC_0451.svs,2 +CRC_0452,CRC_0452.svs,2 +CRC_0453,CRC_0453.svs,1 +CRC_0454,CRC_0454.svs,1 +CRC_0455,CRC_0455.svs,0 +CRC_0456,CRC_0456.svs,2 +CRC_0457,CRC_0457.svs,0 +CRC_0458,CRC_0458.svs,1 +CRC_0459,CRC_0459.svs,1 +CRC_0460,CRC_0460.svs,1 +CRC_0461,CRC_0461.svs,1 +CRC_0462,CRC_0462.svs,0 +CRC_0463,CRC_0463.svs,2 +CRC_0464,CRC_0464.svs,1 +CRC_0465,CRC_0465.svs,2 +CRC_0466,CRC_0466.svs,0 +CRC_0467,CRC_0467.svs,1 +CRC_0468,CRC_0468.svs,1 +CRC_0469,CRC_0469.svs,2 +CRC_0470,CRC_0470.svs,2 +CRC_0471,CRC_0471.svs,1 +CRC_0472,CRC_0472.svs,0 +CRC_0473,CRC_0473.svs,1 +CRC_0474,CRC_0474.svs,1 +CRC_0475,CRC_0475.svs,0 +CRC_0476,CRC_0476.svs,2 +CRC_0477,CRC_0477.svs,1 +CRC_0478,CRC_0478.svs,0 +CRC_0479,CRC_0479.svs,0 +CRC_0480,CRC_0480.svs,1 +CRC_0481,CRC_0481.svs,0 +CRC_0482,CRC_0482.svs,1 +CRC_0483,CRC_0483.svs,1 +CRC_0484,CRC_0484.svs,0 +CRC_0485,CRC_0485.svs,1 +CRC_0486,CRC_0486.svs,1 +CRC_0487,CRC_0487.svs,2 +CRC_0488,CRC_0488.svs,0 +CRC_0489,CRC_0489.svs,0 +CRC_0490,CRC_0490.svs,2 +CRC_0491,CRC_0491.svs,2 +CRC_0492,CRC_0492.svs,0 +CRC_0493,CRC_0493.svs,1 +CRC_0494,CRC_0494.svs,0 +CRC_0495,CRC_0495.svs,2 +CRC_0496,CRC_0496.svs,2 +CRC_0497,CRC_0497.svs,1 +CRC_0498,CRC_0498.svs,1 +CRC_0499,CRC_0499.svs,2 +CRC_0500,CRC_0500.svs,1 +CRC_0501,CRC_0501.svs,1 +CRC_0502,CRC_0502.svs,0 +CRC_0503,CRC_0503.svs,0 +CRC_0504,CRC_0504.svs,2 +CRC_0505,CRC_0505.svs,2 +CRC_0506,CRC_0506.svs,2 +CRC_0507,CRC_0507.svs,2 +CRC_0508,CRC_0508.svs,2 +CRC_0509,CRC_0509.svs,2 +CRC_0510,CRC_0510.svs,0 +CRC_0511,CRC_0511.svs,1 +CRC_0512,CRC_0512.svs,1 +CRC_0513,CRC_0513.svs,2 +CRC_0514,CRC_0514.svs,0 +CRC_0515,CRC_0515.svs,2 +CRC_0516,CRC_0516.svs,1 +CRC_0517,CRC_0517.svs,1 +CRC_0518,CRC_0518.svs,0 +CRC_0519,CRC_0519.svs,1 +CRC_0520,CRC_0520.svs,0 +CRC_0521,CRC_0521.svs,2 +CRC_0522,CRC_0522.svs,1 +CRC_0523,CRC_0523.svs,2 +CRC_0524,CRC_0524.svs,1 +CRC_0525,CRC_0525.svs,2 +CRC_0526,CRC_0526.svs,1 +CRC_0527,CRC_0527.svs,1 +CRC_0528,CRC_0528.svs,0 +CRC_0529,CRC_0529.svs,1 +CRC_0530,CRC_0530.svs,1 +CRC_0531,CRC_0531.svs,1 +CRC_0532,CRC_0532.svs,1 +CRC_0533,CRC_0533.svs,0 +CRC_0534,CRC_0534.svs,1 +CRC_0535,CRC_0535.svs,2 +CRC_0536,CRC_0536.svs,2 +CRC_0537,CRC_0537.svs,1 +CRC_0538,CRC_0538.svs,1 +CRC_0539,CRC_0539.svs,1 +CRC_0540,CRC_0540.svs,1 +CRC_0541,CRC_0541.svs,1 +CRC_0542,CRC_0542.svs,0 +CRC_0543,CRC_0543.svs,0 +CRC_0544,CRC_0544.svs,1 +CRC_0545,CRC_0545.svs,2 +CRC_0546,CRC_0546.svs,0 +CRC_0547,CRC_0547.svs,2 +CRC_0548,CRC_0548.svs,2 +CRC_0549,CRC_0549.svs,1 +CRC_0550,CRC_0550.svs,1 +CRC_0551,CRC_0551.svs,2 +CRC_0552,CRC_0552.svs,1 +CRC_0553,CRC_0553.svs,0 +CRC_0554,CRC_0554.svs,1 +CRC_0555,CRC_0555.svs,0 +CRC_0556,CRC_0556.svs,1 +CRC_0557,CRC_0557.svs,1 +CRC_0558,CRC_0558.svs,0 +CRC_0559,CRC_0559.svs,1 +CRC_0560,CRC_0560.svs,2 +CRC_0561,CRC_0561.svs,2 +CRC_0562,CRC_0562.svs,1 +CRC_0563,CRC_0563.svs,1 +CRC_0564,CRC_0564.svs,0 +CRC_0565,CRC_0565.svs,0 +CRC_0566,CRC_0566.svs,1 +CRC_0567,CRC_0567.svs,1 +CRC_0568,CRC_0568.svs,1 +CRC_0569,CRC_0569.svs,2 +CRC_0570,CRC_0570.svs,2 +CRC_0571,CRC_0571.svs,1 +CRC_0572,CRC_0572.svs,2 +CRC_0573,CRC_0573.svs,0 +CRC_0574,CRC_0574.svs,0 +CRC_0575,CRC_0575.svs,1 +CRC_0576,CRC_0576.svs,2 +CRC_0577,CRC_0577.svs,1 +CRC_0578,CRC_0578.svs,2 +CRC_0579,CRC_0579.svs,1 +CRC_0580,CRC_0580.svs,1 +CRC_0581,CRC_0581.svs,0 +CRC_0582,CRC_0582.svs,1 +CRC_0583,CRC_0583.svs,1 +CRC_0584,CRC_0584.svs,0 +CRC_0585,CRC_0585.svs,2 +CRC_0586,CRC_0586.svs,2 +CRC_0587,CRC_0587.svs,1 +CRC_0588,CRC_0588.svs,1 +CRC_0589,CRC_0589.svs,1 +CRC_0590,CRC_0590.svs,1 +CRC_0591,CRC_0591.svs,1 +CRC_0592,CRC_0592.svs,1 +CRC_0593,CRC_0593.svs,0 +CRC_0594,CRC_0594.svs,2 +CRC_0595,CRC_0595.svs,2 +CRC_0596,CRC_0596.svs,1 +CRC_0597,CRC_0597.svs,0 +CRC_0598,CRC_0598.svs,1 +CRC_0599,CRC_0599.svs,1 +CRC_0600,CRC_0600.svs,0 +CRC_0601,CRC_0601.svs,2 +CRC_0602,CRC_0602.svs,1 +CRC_0603,CRC_0603.svs,0 +CRC_0604,CRC_0604.svs,2 +CRC_0605,CRC_0605.svs,1 +CRC_0606,CRC_0606.svs,1 +CRC_0607,CRC_0607.svs,2 +CRC_0608,CRC_0608.svs,0 +CRC_0609,CRC_0609.svs,1 +CRC_0610,CRC_0610.svs,0 +CRC_0611,CRC_0611.svs,1 +CRC_0612,CRC_0612.svs,2 +CRC_0613,CRC_0613.svs,1 +CRC_0614,CRC_0614.svs,2 +CRC_0615,CRC_0615.svs,1 +CRC_0616,CRC_0616.svs,0 +CRC_0617,CRC_0617.svs,1 +CRC_0618,CRC_0618.svs,0 +CRC_0619,CRC_0619.svs,0 +CRC_0620,CRC_0620.svs,2 +CRC_0621,CRC_0621.svs,1 +CRC_0622,CRC_0622.svs,2 +CRC_0623,CRC_0623.svs,0 +CRC_0624,CRC_0624.svs,1 +CRC_0625,CRC_0625.svs,2 +CRC_0626,CRC_0626.svs,1 +CRC_0627,CRC_0627.svs,1 +CRC_0628,CRC_0628.svs,1 +CRC_0629,CRC_0629.svs,1 +CRC_0630,CRC_0630.svs,1 +CRC_0631,CRC_0631.svs,1 +CRC_0632,CRC_0632.svs,1 +CRC_0633,CRC_0633.svs,1 +CRC_0634,CRC_0634.svs,1 +CRC_0635,CRC_0635.svs,1 +CRC_0636,CRC_0636.svs,1 +CRC_0637,CRC_0637.svs,0 +CRC_0638,CRC_0638.svs,2 +CRC_0639,CRC_0639.svs,0 +CRC_0640,CRC_0640.svs,1 +CRC_0641,CRC_0641.svs,1 +CRC_0642,CRC_0642.svs,2 +CRC_0643,CRC_0643.svs,2 +CRC_0644,CRC_0644.svs,0 +CRC_0645,CRC_0645.svs,1 +CRC_0646,CRC_0646.svs,0 +CRC_0647,CRC_0647.svs,0 +CRC_0648,CRC_0648.svs,1 +CRC_0649,CRC_0649.svs,0 +CRC_0650,CRC_0650.svs,1 +CRC_0651,CRC_0651.svs,1 +CRC_0652,CRC_0652.svs,2 +CRC_0653,CRC_0653.svs,1 +CRC_0654,CRC_0654.svs,2 +CRC_0655,CRC_0655.svs,2 +CRC_0656,CRC_0656.svs,0 +CRC_0657,CRC_0657.svs,2 +CRC_0658,CRC_0658.svs,2 +CRC_0659,CRC_0659.svs,0 +CRC_0660,CRC_0660.svs,1 +CRC_0661,CRC_0661.svs,0 +CRC_0662,CRC_0662.svs,1 +CRC_0663,CRC_0663.svs,1 +CRC_0664,CRC_0664.svs,2 +CRC_0665,CRC_0665.svs,1 +CRC_0666,CRC_0666.svs,2 +CRC_0667,CRC_0667.svs,0 +CRC_0668,CRC_0668.svs,1 +CRC_0669,CRC_0669.svs,2 +CRC_0670,CRC_0670.svs,1 +CRC_0671,CRC_0671.svs,0 +CRC_0672,CRC_0672.svs,2 +CRC_0673,CRC_0673.svs,1 +CRC_0674,CRC_0674.svs,0 +CRC_0675,CRC_0675.svs,0 +CRC_0676,CRC_0676.svs,2 +CRC_0677,CRC_0677.svs,1 +CRC_0678,CRC_0678.svs,1 +CRC_0679,CRC_0679.svs,0 +CRC_0680,CRC_0680.svs,1 +CRC_0681,CRC_0681.svs,2 +CRC_0682,CRC_0682.svs,0 +CRC_0683,CRC_0683.svs,0 +CRC_0684,CRC_0684.svs,1 +CRC_0685,CRC_0685.svs,0 +CRC_0686,CRC_0686.svs,1 +CRC_0687,CRC_0687.svs,1 +CRC_0688,CRC_0688.svs,0 +CRC_0689,CRC_0689.svs,1 +CRC_0690,CRC_0690.svs,0 +CRC_0691,CRC_0691.svs,1 +CRC_0692,CRC_0692.svs,0 +CRC_0693,CRC_0693.svs,1 +CRC_0694,CRC_0694.svs,1 +CRC_0695,CRC_0695.svs,0 +CRC_0696,CRC_0696.svs,0 +CRC_0697,CRC_0697.svs,1 +CRC_0698,CRC_0698.svs,1 +CRC_0699,CRC_0699.svs,0 +CRC_0700,CRC_0700.svs,2 +CRC_0701,CRC_0701.svs,2 +CRC_0702,CRC_0702.svs,0 +CRC_0703,CRC_0703.svs,1 +CRC_0704,CRC_0704.svs,0 +CRC_0705,CRC_0705.svs,0 +CRC_0706,CRC_0706.svs,1 +CRC_0707,CRC_0707.svs,0 +CRC_0708,CRC_0708.svs,1 +CRC_0709,CRC_0709.svs,1 +CRC_0710,CRC_0710.svs,2 +CRC_0711,CRC_0711.svs,0 +CRC_0712,CRC_0712.svs,0 +CRC_0713,CRC_0713.svs,1 +CRC_0714,CRC_0714.svs,1 +CRC_0715,CRC_0715.svs,1 +CRC_0716,CRC_0716.svs,2 +CRC_0717,CRC_0717.svs,2 +CRC_0718,CRC_0718.svs,2 +CRC_0719,CRC_0719.svs,1 +CRC_0720,CRC_0720.svs,2 +CRC_0721,CRC_0721.svs,2 +CRC_0722,CRC_0722.svs,1 +CRC_0723,CRC_0723.svs,1 +CRC_0724,CRC_0724.svs,1 +CRC_0725,CRC_0725.svs,1 +CRC_0726,CRC_0726.svs,1 +CRC_0727,CRC_0727.svs,0 +CRC_0728,CRC_0728.svs,2 +CRC_0729,CRC_0729.svs,0 +CRC_0730,CRC_0730.svs,0 +CRC_0731,CRC_0731.svs,1 +CRC_0732,CRC_0732.svs,1 +CRC_0733,CRC_0733.svs,0 +CRC_0734,CRC_0734.svs,1 +CRC_0735,CRC_0735.svs,0 +CRC_0736,CRC_0736.svs,1 +CRC_0737,CRC_0737.svs,0 +CRC_0738,CRC_0738.svs,1 +CRC_0739,CRC_0739.svs,0 +CRC_0740,CRC_0740.svs,0 +CRC_0741,CRC_0741.svs,1 +CRC_0742,CRC_0742.svs,2 +CRC_0743,CRC_0743.svs,0 +CRC_0744,CRC_0744.svs,0 +CRC_0745,CRC_0745.svs,2 +CRC_0746,CRC_0746.svs,1 +CRC_0747,CRC_0747.svs,2 +CRC_0748,CRC_0748.svs,0 +CRC_0749,CRC_0749.svs,0 +CRC_0750,CRC_0750.svs,0 +CRC_0751,CRC_0751.svs,0 +CRC_0752,CRC_0752.svs,2 +CRC_0753,CRC_0753.svs,1 +CRC_0754,CRC_0754.svs,2 +CRC_0755,CRC_0755.svs,1 +CRC_0756,CRC_0756.svs,2 +CRC_0757,CRC_0757.svs,0 +CRC_0758,CRC_0758.svs,2 +CRC_0759,CRC_0759.svs,1 +CRC_0760,CRC_0760.svs,1 +CRC_0761,CRC_0761.svs,0 +CRC_0762,CRC_0762.svs,1 +CRC_0763,CRC_0763.svs,2 +CRC_0764,CRC_0764.svs,0 +CRC_0765,CRC_0765.svs,1 +CRC_0766,CRC_0766.svs,1 +CRC_0767,CRC_0767.svs,2 +CRC_0768,CRC_0768.svs,2 +CRC_0769,CRC_0769.svs,1 +CRC_0770,CRC_0770.svs,2 +CRC_0771,CRC_0771.svs,0 +CRC_0772,CRC_0772.svs,0 +CRC_0773,CRC_0773.svs,0 +CRC_0774,CRC_0774.svs,1 +CRC_0775,CRC_0775.svs,1 +CRC_0776,CRC_0776.svs,2 +CRC_0777,CRC_0777.svs,0 +CRC_0778,CRC_0778.svs,0 +CRC_0779,CRC_0779.svs,1 +CRC_0780,CRC_0780.svs,1 +CRC_0781,CRC_0781.svs,1 +CRC_0782,CRC_0782.svs,1 +CRC_0783,CRC_0783.svs,0 +CRC_0784,CRC_0784.svs,1 +CRC_0785,CRC_0785.svs,1 +CRC_0786,CRC_0786.svs,2 +CRC_0787,CRC_0787.svs,0 +CRC_0788,CRC_0788.svs,2 +CRC_0789,CRC_0789.svs,1 +CRC_0790,CRC_0790.svs,2 +CRC_0791,CRC_0791.svs,1 +CRC_0792,CRC_0792.svs,1 +CRC_0793,CRC_0793.svs,1 +CRC_0794,CRC_0794.svs,1 +CRC_0795,CRC_0795.svs,1 +CRC_0796,CRC_0796.svs,1 +CRC_0797,CRC_0797.svs,2 +CRC_0798,CRC_0798.svs,2 +CRC_0799,CRC_0799.svs,1 +CRC_0800,CRC_0800.svs,1 +CRC_0801,CRC_0801.svs,1 +CRC_0802,CRC_0802.svs,0 +CRC_0803,CRC_0803.svs,1 +CRC_0804,CRC_0804.svs,1 +CRC_0805,CRC_0805.svs,1 +CRC_0806,CRC_0806.svs,0 +CRC_0807,CRC_0807.svs,1 +CRC_0808,CRC_0808.svs,2 +CRC_0809,CRC_0809.svs,2 +CRC_0810,CRC_0810.svs,1 +CRC_0811,CRC_0811.svs,1 +CRC_0812,CRC_0812.svs,1 +CRC_0813,CRC_0813.svs,0 +CRC_0814,CRC_0814.svs,2 +CRC_0815,CRC_0815.svs,0 +CRC_0816,CRC_0816.svs,1 +CRC_0817,CRC_0817.svs,1 +CRC_0818,CRC_0818.svs,0 +CRC_0819,CRC_0819.svs,1 +CRC_0820,CRC_0820.svs,0 +CRC_0821,CRC_0821.svs,1 +CRC_0822,CRC_0822.svs,1 +CRC_0823,CRC_0823.svs,1 +CRC_0824,CRC_0824.svs,0 +CRC_0825,CRC_0825.svs,0 +CRC_0826,CRC_0826.svs,0 +CRC_0827,CRC_0827.svs,1 +CRC_0828,CRC_0828.svs,1 +CRC_0829,CRC_0829.svs,2 +CRC_0830,CRC_0830.svs,1 +CRC_0831,CRC_0831.svs,1 +CRC_0832,CRC_0832.svs,1 +CRC_0833,CRC_0833.svs,0 +CRC_0834,CRC_0834.svs,2 +CRC_0835,CRC_0835.svs,2 +CRC_0836,CRC_0836.svs,1 +CRC_0837,CRC_0837.svs,1 +CRC_0838,CRC_0838.svs,2 +CRC_0839,CRC_0839.svs,1 +CRC_0840,CRC_0840.svs,2 +CRC_0841,CRC_0841.svs,1 +CRC_0842,CRC_0842.svs,0 +CRC_0843,CRC_0843.svs,1 +CRC_0844,CRC_0844.svs,1 +CRC_0845,CRC_0845.svs,2 +CRC_0846,CRC_0846.svs,1 +CRC_0847,CRC_0847.svs,1 +CRC_0848,CRC_0848.svs,1 +CRC_0849,CRC_0849.svs,2 +CRC_0850,CRC_0850.svs,1 +CRC_0851,CRC_0851.svs,1 +CRC_0852,CRC_0852.svs,2 +CRC_0853,CRC_0853.svs,1 +CRC_0854,CRC_0854.svs,2 +CRC_0855,CRC_0855.svs,1 +CRC_0856,CRC_0856.svs,2 +CRC_0857,CRC_0857.svs,1 +CRC_0858,CRC_0858.svs,2 +CRC_0859,CRC_0859.svs,1 +CRC_0860,CRC_0860.svs,1 +CRC_0861,CRC_0861.svs,1 +CRC_0862,CRC_0862.svs,1 +CRC_0863,CRC_0863.svs,2 +CRC_0864,CRC_0864.svs,1 +CRC_0865,CRC_0865.svs,1 +CRC_0866,CRC_0866.svs,2 +CRC_0867,CRC_0867.svs,1 +CRC_0868,CRC_0868.svs,0 +CRC_0869,CRC_0869.svs,0 +CRC_0870,CRC_0870.svs,2 +CRC_0871,CRC_0871.svs,1 +CRC_0872,CRC_0872.svs,2 +CRC_0873,CRC_0873.svs,1 +CRC_0874,CRC_0874.svs,2 +CRC_0875,CRC_0875.svs,0 +CRC_0876,CRC_0876.svs,1 +CRC_0877,CRC_0877.svs,1 +CRC_0878,CRC_0878.svs,2 +CRC_0879,CRC_0879.svs,0 +CRC_0880,CRC_0880.svs,0 +CRC_0881,CRC_0881.svs,2 +CRC_0882,CRC_0882.svs,2 +CRC_0883,CRC_0883.svs,2 +CRC_0884,CRC_0884.svs,1 +CRC_0885,CRC_0885.svs,0 +CRC_0886,CRC_0886.svs,1 +CRC_0887,CRC_0887.svs,0 +CRC_0888,CRC_0888.svs,1 +CRC_0889,CRC_0889.svs,1 +CRC_0890,CRC_0890.svs,1 +CRC_0891,CRC_0891.svs,2 +CRC_0892,CRC_0892.svs,2 +CRC_0893,CRC_0893.svs,0 +CRC_0894,CRC_0894.svs,2 +CRC_0895,CRC_0895.svs,0 +CRC_0896,CRC_0896.svs,0 +CRC_0897,CRC_0897.svs,0 +CRC_0898,CRC_0898.svs,1 +CRC_0899,CRC_0899.svs,0 +CRC_0900,CRC_0900.svs,0 +CRC_0901,CRC_0901.svs,1 +CRC_0902,CRC_0902.svs,1 +CRC_0903,CRC_0903.svs,2 +CRC_0904,CRC_0904.svs,2 +CRC_0905,CRC_0905.svs,1 +CRC_0906,CRC_0906.svs,1 +CRC_0907,CRC_0907.svs,2 +CRC_0908,CRC_0908.svs,2 +CRC_0909,CRC_0909.svs,2 +CRC_0910,CRC_0910.svs,2 +CRC_0911,CRC_0911.svs,1 +CRC_0912,CRC_0912.svs,0 +CRC_0913,CRC_0913.svs,2 +CRC_0914,CRC_0914.svs,1 +CRC_0915,CRC_0915.svs,2 +CRC_0916,CRC_0916.svs,1 +CRC_0917,CRC_0917.svs,1 +CRC_0918,CRC_0918.svs,0 +CRC_0919,CRC_0919.svs,2 +CRC_0920,CRC_0920.svs,1 +CRC_0921,CRC_0921.svs,0 +CRC_0922,CRC_0922.svs,0 +CRC_0923,CRC_0923.svs,2 +CRC_0924,CRC_0924.svs,0 +CRC_0925,CRC_0925.svs,2 +CRC_0926,CRC_0926.svs,2 +CRC_0927,CRC_0927.svs,1 +CRC_0928,CRC_0928.svs,1 +CRC_0929,CRC_0929.svs,1 +CRC_0930,CRC_0930.svs,0 +CRC_0931,CRC_0931.svs,0 +CRC_0932,CRC_0932.svs,1 +CRC_0933,CRC_0933.svs,1 +CRC_0934,CRC_0934.svs,1 +CRC_0935,CRC_0935.svs,0 +CRC_0936,CRC_0936.svs,2 +CRC_0937,CRC_0937.svs,1 +CRC_0938,CRC_0938.svs,0 +CRC_0939,CRC_0939.svs,0 +CRC_0940,CRC_0940.svs,2 +CRC_0941,CRC_0941.svs,1 +CRC_0942,CRC_0942.svs,1 +CRC_0943,CRC_0943.svs,0 +CRC_0944,CRC_0944.svs,1 +CRC_0945,CRC_0945.svs,1 +CRC_0946,CRC_0946.svs,1 +CRC_0947,CRC_0947.svs,1 +CRC_0948,CRC_0948.svs,2 +CRC_0949,CRC_0949.svs,1 +CRC_0950,CRC_0950.svs,0 +CRC_0951,CRC_0951.svs,2 +CRC_0952,CRC_0952.svs,1 +CRC_0953,CRC_0953.svs,1 +CRC_0954,CRC_0954.svs,1 +CRC_0955,CRC_0955.svs,0 +CRC_0956,CRC_0956.svs,2 +CRC_0957,CRC_0957.svs,1 +CRC_0958,CRC_0958.svs,1 +CRC_0959,CRC_0959.svs,0 +CRC_0960,CRC_0960.svs,1 +CRC_0961,CRC_0961.svs,0 +CRC_0962,CRC_0962.svs,1 +CRC_0963,CRC_0963.svs,2 +CRC_0964,CRC_0964.svs,1 +CRC_0965,CRC_0965.svs,2 +CRC_0966,CRC_0966.svs,2 +CRC_0967,CRC_0967.svs,1 +CRC_0968,CRC_0968.svs,0 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+CRC_2209,CRC_2209.svs,1 +CRC_2210,CRC_2210.svs,2 +CRC_2211,CRC_2211.svs,0 +CRC_2212,CRC_2212.svs,1 +CRC_2213,CRC_2213.svs,2 +CRC_2214,CRC_2214.svs,1 +CRC_2215,CRC_2215.svs,2 +CRC_2216,CRC_2216.svs,1 +CRC_2217,CRC_2217.svs,1 +CRC_2218,CRC_2218.svs,2 +CRC_2219,CRC_2219.svs,2 +CRC_2220,CRC_2220.svs,1 +CRC_2221,CRC_2221.svs,1 +CRC_2222,CRC_2222.svs,2 +CRC_2223,CRC_2223.svs,1 +CRC_2224,CRC_2224.svs,2 +CRC_2225,CRC_2225.svs,2 +CRC_2226,CRC_2226.svs,2 +CRC_2227,CRC_2227.svs,1 +CRC_2228,CRC_2228.svs,2 +CRC_2229,CRC_2229.svs,2 +CRC_2230,CRC_2230.svs,2 +CRC_2231,CRC_2231.svs,2 +CRC_2232,CRC_2232.svs,1 +CRC_2233,CRC_2233.svs,1 +CRC_2234,CRC_2234.svs,0 +CRC_2235,CRC_2235.svs,1 +CRC_2236,CRC_2236.svs,2 +CRC_2237,CRC_2237.svs,2 +CRC_2238,CRC_2238.svs,2 +CRC_2239,CRC_2239.svs,1 +CRC_2240,CRC_2240.svs,2 +CRC_2241,CRC_2241.svs,1 +CRC_2242,CRC_2242.svs,0 +CRC_2243,CRC_2243.svs,2 +CRC_2244,CRC_2244.svs,2 +CRC_2245,CRC_2245.svs,1 +CRC_2246,CRC_2246.svs,2 +CRC_2247,CRC_2247.svs,2 +CRC_2248,CRC_2248.svs,1 +CRC_2249,CRC_2249.svs,2 +CRC_2250,CRC_2250.svs,2 +CRC_2251,CRC_2251.svs,1 +CRC_2252,CRC_2252.svs,1 +CRC_2253,CRC_2253.svs,0 +CRC_2254,CRC_2254.svs,1 +CRC_2255,CRC_2255.svs,0 +CRC_2256,CRC_2256.svs,1 +CRC_2257,CRC_2257.svs,1 +CRC_2258,CRC_2258.svs,0 +CRC_2259,CRC_2259.svs,2 +CRC_2260,CRC_2260.svs,2 +CRC_2261,CRC_2261.svs,2 +CRC_2262,CRC_2262.svs,1 +CRC_2263,CRC_2263.svs,1 +CRC_2264,CRC_2264.svs,2 +CRC_2265,CRC_2265.svs,1 +CRC_2266,CRC_2266.svs,1 +CRC_2267,CRC_2267.svs,1 +CRC_2268,CRC_2268.svs,1 +CRC_2269,CRC_2269.svs,1 +CRC_2270,CRC_2270.svs,1 +CRC_2271,CRC_2271.svs,1 +CRC_2272,CRC_2272.svs,1 +CRC_2273,CRC_2273.svs,2 +CRC_2274,CRC_2274.svs,1 +CRC_2275,CRC_2275.svs,1 +CRC_2276,CRC_2276.svs,2 +CRC_2277,CRC_2277.svs,1 +CRC_2278,CRC_2278.svs,1 +CRC_2279,CRC_2279.svs,1 +CRC_2280,CRC_2280.svs,0 +CRC_2281,CRC_2281.svs,1 +CRC_2282,CRC_2282.svs,0 +CRC_2283,CRC_2283.svs,1 +CRC_2284,CRC_2284.svs,1 +CRC_2285,CRC_2285.svs,2 +CRC_2286,CRC_2286.svs,1 +CRC_2287,CRC_2287.svs,2 +CRC_2288,CRC_2288.svs,2 +CRC_2289,CRC_2289.svs,1 +CRC_2290,CRC_2290.svs,0 +CRC_2291,CRC_2291.svs,0 +CRC_2292,CRC_2292.svs,1 +CRC_2293,CRC_2293.svs,2 +CRC_2294,CRC_2294.svs,1 +CRC_2295,CRC_2295.svs,2 +CRC_2296,CRC_2296.svs,1 +CRC_2297,CRC_2297.svs,2 +CRC_2298,CRC_2298.svs,2 +CRC_2299,CRC_2299.svs,1 +CRC_2300,CRC_2300.svs,0 +CRC_2301,CRC_2301.svs,1 +CRC_2302,CRC_2302.svs,1 +CRC_2303,CRC_2303.svs,1 +CRC_2304,CRC_2304.svs,0 +CRC_2305,CRC_2305.svs,1 +CRC_2306,CRC_2306.svs,2 +CRC_2307,CRC_2307.svs,2 +CRC_2308,CRC_2308.svs,1 +CRC_2309,CRC_2309.svs,1 +CRC_2310,CRC_2310.svs,1 +CRC_2311,CRC_2311.svs,1 +CRC_2312,CRC_2312.svs,1 +CRC_2313,CRC_2313.svs,1 +CRC_2314,CRC_2314.svs,2 +CRC_2315,CRC_2315.svs,2 +CRC_2316,CRC_2316.svs,2 +CRC_2317,CRC_2317.svs,1 +CRC_2318,CRC_2318.svs,1 +CRC_2319,CRC_2319.svs,2 +CRC_2320,CRC_2320.svs,2 +CRC_2321,CRC_2321.svs,2 +CRC_2322,CRC_2322.svs,1 +CRC_2323,CRC_2323.svs,1 +CRC_2324,CRC_2324.svs,1 +CRC_2325,CRC_2325.svs,1 +CRC_2326,CRC_2326.svs,2 +CRC_2327,CRC_2327.svs,1 +CRC_2328,CRC_2328.svs,2 +CRC_2329,CRC_2329.svs,0 +CRC_2330,CRC_2330.svs,1 +CRC_2331,CRC_2331.svs,1 +CRC_2332,CRC_2332.svs,1 +CRC_2333,CRC_2333.svs,0 +CRC_2334,CRC_2334.svs,1 +CRC_2335,CRC_2335.svs,2 +CRC_2336,CRC_2336.svs,0 +CRC_2337,CRC_2337.svs,1 +CRC_2338,CRC_2338.svs,0 +CRC_2339,CRC_2339.svs,1 +CRC_2340,CRC_2340.svs,1 +CRC_2341,CRC_2341.svs,0 +CRC_2342,CRC_2342.svs,2 +CRC_2343,CRC_2343.svs,0 +CRC_2344,CRC_2344.svs,2 +CRC_2345,CRC_2345.svs,1 +CRC_2346,CRC_2346.svs,1 +CRC_2347,CRC_2347.svs,2 +CRC_2348,CRC_2348.svs,1 +CRC_2349,CRC_2349.svs,1 +CRC_2350,CRC_2350.svs,1 +CRC_2351,CRC_2351.svs,1 +CRC_2352,CRC_2352.svs,1 +CRC_2353,CRC_2353.svs,2 +CRC_2354,CRC_2354.svs,0 +CRC_2355,CRC_2355.svs,2 +CRC_2356,CRC_2356.svs,1 +CRC_2357,CRC_2357.svs,2 +CRC_2358,CRC_2358.svs,1 +CRC_2359,CRC_2359.svs,2 +CRC_2360,CRC_2360.svs,1 +CRC_2361,CRC_2361.svs,1 +CRC_2362,CRC_2362.svs,1 +CRC_2363,CRC_2363.svs,1 +CRC_2364,CRC_2364.svs,0 +CRC_2365,CRC_2365.svs,1 +CRC_2366,CRC_2366.svs,1 +CRC_2367,CRC_2367.svs,0 +CRC_2368,CRC_2368.svs,2 +CRC_2369,CRC_2369.svs,0 +CRC_2370,CRC_2370.svs,2 +CRC_2371,CRC_2371.svs,1 +CRC_2372,CRC_2372.svs,1 +CRC_2373,CRC_2373.svs,2 +CRC_2374,CRC_2374.svs,1 +CRC_2375,CRC_2375.svs,1 +CRC_2376,CRC_2376.svs,2 +CRC_2377,CRC_2377.svs,1 +CRC_2378,CRC_2378.svs,1 +CRC_2379,CRC_2379.svs,2 +CRC_2380,CRC_2380.svs,0 +CRC_2381,CRC_2381.svs,1 +CRC_2382,CRC_2382.svs,1 +CRC_2383,CRC_2383.svs,0 +CRC_2384,CRC_2384.svs,1 +CRC_2385,CRC_2385.svs,1 +CRC_2386,CRC_2386.svs,1 +CRC_2387,CRC_2387.svs,2 +CRC_2388,CRC_2388.svs,2 +CRC_2389,CRC_2389.svs,1 +CRC_2390,CRC_2390.svs,2 +CRC_2391,CRC_2391.svs,0 +CRC_2392,CRC_2392.svs,1 +CRC_2393,CRC_2393.svs,1 +CRC_2394,CRC_2394.svs,0 +CRC_2395,CRC_2395.svs,1 +CRC_2396,CRC_2396.svs,1 +CRC_2397,CRC_2397.svs,1 +CRC_2398,CRC_2398.svs,2 +CRC_2399,CRC_2399.svs,1 +CRC_2400,CRC_2400.svs,2 +CRC_2401,CRC_2401.svs,2 +CRC_2402,CRC_2402.svs,1 +CRC_2403,CRC_2403.svs,2 +CRC_2404,CRC_2404.svs,0 +CRC_2405,CRC_2405.svs,2 +CRC_2406,CRC_2406.svs,2 +CRC_2407,CRC_2407.svs,1 +CRC_2408,CRC_2408.svs,2 +CRC_2409,CRC_2409.svs,1 +CRC_2410,CRC_2410.svs,0 +CRC_2411,CRC_2411.svs,1 +CRC_2412,CRC_2412.svs,1 +CRC_2413,CRC_2413.svs,2 +CRC_2414,CRC_2414.svs,2 +CRC_2415,CRC_2415.svs,2 +CRC_2416,CRC_2416.svs,2 +CRC_2417,CRC_2417.svs,1 +CRC_2418,CRC_2418.svs,2 +CRC_2419,CRC_2419.svs,1 +CRC_2420,CRC_2420.svs,2 +CRC_2421,CRC_2421.svs,1 +CRC_2422,CRC_2422.svs,1 +CRC_2423,CRC_2423.svs,0 +CRC_2424,CRC_2424.svs,1 +CRC_2425,CRC_2425.svs,2 +CRC_2426,CRC_2426.svs,0 +CRC_2427,CRC_2427.svs,1 +CRC_2428,CRC_2428.svs,1 +CRC_2429,CRC_2429.svs,1 +CRC_2430,CRC_2430.svs,1 +CRC_2431,CRC_2431.svs,1 +CRC_2432,CRC_2432.svs,1 +CRC_2433,CRC_2433.svs,1 +CRC_2434,CRC_2434.svs,1 +CRC_2435,CRC_2435.svs,1 +CRC_2436,CRC_2436.svs,0 +CRC_2437,CRC_2437.svs,1 +CRC_2438,CRC_2438.svs,1 +CRC_2439,CRC_2439.svs,1 +CRC_2440,CRC_2440.svs,1 +CRC_2441,CRC_2441.svs,1 +CRC_2442,CRC_2442.svs,1 +CRC_2443,CRC_2443.svs,1 +CRC_2444,CRC_2444.svs,1 +CRC_2445,CRC_2445.svs,0 +CRC_2446,CRC_2446.svs,0 +CRC_2447,CRC_2447.svs,1 +CRC_2448,CRC_2448.svs,1 +CRC_2449,CRC_2449.svs,2 +CRC_2450,CRC_2450.svs,0 +CRC_2451,CRC_2451.svs,1 +CRC_2452,CRC_2452.svs,1 +CRC_2453,CRC_2453.svs,1 +CRC_2454,CRC_2454.svs,2 +CRC_2455,CRC_2455.svs,0 +CRC_2456,CRC_2456.svs,2 +CRC_2457,CRC_2457.svs,1 +CRC_2458,CRC_2458.svs,2 +CRC_2459,CRC_2459.svs,1 +CRC_2460,CRC_2460.svs,1 +CRC_2461,CRC_2461.svs,1 +CRC_2462,CRC_2462.svs,2 +CRC_2463,CRC_2463.svs,1 +CRC_2464,CRC_2464.svs,2 +CRC_2465,CRC_2465.svs,1 +CRC_2466,CRC_2466.svs,1 +CRC_2467,CRC_2467.svs,0 +CRC_2468,CRC_2468.svs,1 +CRC_2469,CRC_2469.svs,1 +CRC_2470,CRC_2470.svs,2 +CRC_2471,CRC_2471.svs,1 +CRC_2472,CRC_2472.svs,1 +CRC_2473,CRC_2473.svs,1 +CRC_2474,CRC_2474.svs,1 +CRC_2475,CRC_2475.svs,1 +CRC_2476,CRC_2476.svs,1 +CRC_2477,CRC_2477.svs,2 +CRC_2478,CRC_2478.svs,1 +CRC_2479,CRC_2479.svs,1 +CRC_2480,CRC_2480.svs,1 +CRC_2481,CRC_2481.svs,2 +CRC_2482,CRC_2482.svs,1 +CRC_2483,CRC_2483.svs,2 +CRC_2484,CRC_2484.svs,2 +CRC_2485,CRC_2485.svs,1 +CRC_2486,CRC_2486.svs,1 +CRC_2487,CRC_2487.svs,1 +CRC_2488,CRC_2488.svs,1 +CRC_2489,CRC_2489.svs,1 +CRC_2490,CRC_2490.svs,1 +CRC_2491,CRC_2491.svs,2 +CRC_2492,CRC_2492.svs,1 +CRC_2493,CRC_2493.svs,2 +CRC_2494,CRC_2494.svs,2 +CRC_2495,CRC_2495.svs,1 +CRC_2496,CRC_2496.svs,0 +CRC_2497,CRC_2497.svs,1 +CRC_2498,CRC_2498.svs,0 +CRC_2499,CRC_2499.svs,1 +CRC_2500,CRC_2500.svs,1 +CRC_2501,CRC_2501.svs,0 +CRC_2502,CRC_2502.svs,1 +CRC_2503,CRC_2503.svs,1 +CRC_2504,CRC_2504.svs,1 +CRC_2505,CRC_2505.svs,1 +CRC_2506,CRC_2506.svs,1 +CRC_2507,CRC_2507.svs,2 +CRC_2508,CRC_2508.svs,1 +CRC_2509,CRC_2509.svs,1 +CRC_2510,CRC_2510.svs,1 +CRC_2511,CRC_2511.svs,1 +CRC_2512,CRC_2512.svs,2 +CRC_2513,CRC_2513.svs,1 +CRC_2514,CRC_2514.svs,0 +CRC_2515,CRC_2515.svs,1 +CRC_2516,CRC_2516.svs,0 +CRC_2517,CRC_2517.svs,2 +CRC_2518,CRC_2518.svs,0 +CRC_2519,CRC_2519.svs,1 +CRC_2520,CRC_2520.svs,0 +CRC_2521,CRC_2521.svs,0 +CRC_2522,CRC_2522.svs,1 +CRC_2523,CRC_2523.svs,2 +CRC_2524,CRC_2524.svs,1 +CRC_2525,CRC_2525.svs,2 +CRC_2526,CRC_2526.svs,1 +CRC_2527,CRC_2527.svs,2 +CRC_2528,CRC_2528.svs,1 +CRC_2529,CRC_2529.svs,2 +CRC_2530,CRC_2530.svs,1 +CRC_2531,CRC_2531.svs,1 +CRC_2532,CRC_2532.svs,1 +CRC_2533,CRC_2533.svs,2 +CRC_2534,CRC_2534.svs,2 +CRC_2535,CRC_2535.svs,1 +CRC_2536,CRC_2536.svs,1 +CRC_2537,CRC_2537.svs,1 +CRC_2538,CRC_2538.svs,1 +CRC_2539,CRC_2539.svs,1 +CRC_2540,CRC_2540.svs,1 +CRC_2541,CRC_2541.svs,2 +CRC_2542,CRC_2542.svs,2 +CRC_2543,CRC_2543.svs,1 +CRC_2544,CRC_2544.svs,1 +CRC_2545,CRC_2545.svs,1 +CRC_2546,CRC_2546.svs,1 +CRC_2547,CRC_2547.svs,2 +CRC_2548,CRC_2548.svs,1 +CRC_2549,CRC_2549.svs,1 +CRC_2550,CRC_2550.svs,2 +CRC_2551,CRC_2551.svs,2 +CRC_2552,CRC_2552.svs,1 +CRC_2553,CRC_2553.svs,2 +CRC_2554,CRC_2554.svs,1 +CRC_2555,CRC_2555.svs,2 +CRC_2556,CRC_2556.svs,0 +CRC_2557,CRC_2557.svs,1 +CRC_2558,CRC_2558.svs,2 +CRC_2559,CRC_2559.svs,2 +CRC_2560,CRC_2560.svs,0 +CRC_2561,CRC_2561.svs,2 +CRC_2562,CRC_2562.svs,2 +CRC_2563,CRC_2563.svs,2 +CRC_2564,CRC_2564.svs,1 +CRC_2565,CRC_2565.svs,0 +CRC_2566,CRC_2566.svs,1 +CRC_2567,CRC_2567.svs,2 +CRC_2568,CRC_2568.svs,1 +CRC_2569,CRC_2569.svs,1 +CRC_2570,CRC_2570.svs,2 +CRC_2571,CRC_2571.svs,2 +CRC_2572,CRC_2572.svs,2 +CRC_2573,CRC_2573.svs,1 +CRC_2574,CRC_2574.svs,0 +CRC_2575,CRC_2575.svs,2 +CRC_2576,CRC_2576.svs,0 +CRC_2577,CRC_2577.svs,2 +CRC_2578,CRC_2578.svs,2 +CRC_2579,CRC_2579.svs,2 +CRC_2580,CRC_2580.svs,0 +CRC_2581,CRC_2581.svs,2 +CRC_2582,CRC_2582.svs,2 +CRC_2583,CRC_2583.svs,1 +CRC_2584,CRC_2584.svs,2 +CRC_2585,CRC_2585.svs,2 +CRC_2586,CRC_2586.svs,1 +CRC_2587,CRC_2587.svs,1 +CRC_2588,CRC_2588.svs,1 +CRC_2589,CRC_2589.svs,1 +CRC_2590,CRC_2590.svs,2 +CRC_2591,CRC_2591.svs,1 +CRC_2592,CRC_2592.svs,1 +CRC_2593,CRC_2593.svs,1 +CRC_2594,CRC_2594.svs,1 +CRC_2595,CRC_2595.svs,1 +CRC_2596,CRC_2596.svs,1 +CRC_2597,CRC_2597.svs,2 +CRC_2598,CRC_2598.svs,1 +CRC_2599,CRC_2599.svs,2 +CRC_2600,CRC_2600.svs,2 +CRC_2601,CRC_2601.svs,1 +CRC_2602,CRC_2602.svs,1 +CRC_2603,CRC_2603.svs,1 +CRC_2604,CRC_2604.svs,1 +CRC_2605,CRC_2605.svs,1 +CRC_2606,CRC_2606.svs,2 +CRC_2607,CRC_2607.svs,2 +CRC_2608,CRC_2608.svs,2 +CRC_2609,CRC_2609.svs,2 +CRC_2610,CRC_2610.svs,2 +CRC_2611,CRC_2611.svs,1 +CRC_2612,CRC_2612.svs,1 +CRC_2613,CRC_2613.svs,0 +CRC_2614,CRC_2614.svs,1 +CRC_2615,CRC_2615.svs,0 +CRC_2616,CRC_2616.svs,1 +CRC_2617,CRC_2617.svs,2 +CRC_2618,CRC_2618.svs,1 +CRC_2619,CRC_2619.svs,1 +CRC_2620,CRC_2620.svs,1 +CRC_2621,CRC_2621.svs,1 +CRC_2622,CRC_2622.svs,1 +CRC_2623,CRC_2623.svs,1 +CRC_2624,CRC_2624.svs,0 +CRC_2625,CRC_2625.svs,2 +CRC_2626,CRC_2626.svs,1 +CRC_2627,CRC_2627.svs,2 +CRC_2628,CRC_2628.svs,2 +CRC_2629,CRC_2629.svs,2 +CRC_2630,CRC_2630.svs,1 +CRC_2631,CRC_2631.svs,2 +CRC_2632,CRC_2632.svs,1 +CRC_2633,CRC_2633.svs,1 +CRC_2634,CRC_2634.svs,2 +CRC_2635,CRC_2635.svs,1 +CRC_2636,CRC_2636.svs,1 +CRC_2637,CRC_2637.svs,1 +CRC_2638,CRC_2638.svs,0 +CRC_2639,CRC_2639.svs,0 +CRC_2640,CRC_2640.svs,0 +CRC_2641,CRC_2641.svs,0 +CRC_2642,CRC_2642.svs,1 +CRC_2643,CRC_2643.svs,1 +CRC_2644,CRC_2644.svs,2 +CRC_2645,CRC_2645.svs,2 +CRC_2646,CRC_2646.svs,1 +CRC_2647,CRC_2647.svs,2 +CRC_2648,CRC_2648.svs,2 +CRC_2649,CRC_2649.svs,1 +CRC_2650,CRC_2650.svs,1 +CRC_2651,CRC_2651.svs,1 +CRC_2652,CRC_2652.svs,2 +CRC_2653,CRC_2653.svs,2 +CRC_2654,CRC_2654.svs,2 +CRC_2655,CRC_2655.svs,1 +CRC_2656,CRC_2656.svs,0 +CRC_2657,CRC_2657.svs,1 +CRC_2658,CRC_2658.svs,0 +CRC_2659,CRC_2659.svs,2 +CRC_2660,CRC_2660.svs,1 +CRC_2661,CRC_2661.svs,2 +CRC_2662,CRC_2662.svs,2 +CRC_2663,CRC_2663.svs,1 +CRC_2664,CRC_2664.svs,2 +CRC_2665,CRC_2665.svs,1 +CRC_2666,CRC_2666.svs,1 +CRC_2667,CRC_2667.svs,1 +CRC_2668,CRC_2668.svs,0 +CRC_2669,CRC_2669.svs,1 +CRC_2670,CRC_2670.svs,1 +CRC_2671,CRC_2671.svs,2 +CRC_2672,CRC_2672.svs,1 +CRC_2673,CRC_2673.svs,2 +CRC_2674,CRC_2674.svs,2 +CRC_2675,CRC_2675.svs,2 +CRC_2676,CRC_2676.svs,1 +CRC_2677,CRC_2677.svs,1 +CRC_2678,CRC_2678.svs,0 +CRC_2679,CRC_2679.svs,1 +CRC_2680,CRC_2680.svs,1 +CRC_2681,CRC_2681.svs,2 +CRC_2682,CRC_2682.svs,2 +CRC_2683,CRC_2683.svs,1 +CRC_2684,CRC_2684.svs,1 +CRC_2685,CRC_2685.svs,1 +CRC_2686,CRC_2686.svs,1 +CRC_2687,CRC_2687.svs,1 +CRC_2688,CRC_2688.svs,1 +CRC_2689,CRC_2689.svs,1 +CRC_2690,CRC_2690.svs,2 +CRC_2691,CRC_2691.svs,1 +CRC_2692,CRC_2692.svs,2 +CRC_2693,CRC_2693.svs,0 +CRC_2694,CRC_2694.svs,1 +CRC_2695,CRC_2695.svs,1 +CRC_2696,CRC_2696.svs,2 +CRC_2697,CRC_2697.svs,1 +CRC_2698,CRC_2698.svs,2 +CRC_2699,CRC_2699.svs,2 +CRC_2700,CRC_2700.svs,2 +CRC_2701,CRC_2701.svs,1 +CRC_2702,CRC_2702.svs,2 +CRC_2703,CRC_2703.svs,1 +CRC_2704,CRC_2704.svs,1 +CRC_2705,CRC_2705.svs,0 +CRC_2706,CRC_2706.svs,1 +CRC_2707,CRC_2707.svs,2 +CRC_2708,CRC_2708.svs,1 +CRC_2709,CRC_2709.svs,1 +CRC_2710,CRC_2710.svs,1 +CRC_2711,CRC_2711.svs,1 +CRC_2712,CRC_2712.svs,1 +CRC_2713,CRC_2713.svs,1 +CRC_2714,CRC_2714.svs,1 +CRC_2715,CRC_2715.svs,0 +CRC_2716,CRC_2716.svs,1 +CRC_2717,CRC_2717.svs,1 +CRC_2718,CRC_2718.svs,1 +CRC_2719,CRC_2719.svs,2 +CRC_2720,CRC_2720.svs,0 +CRC_2721,CRC_2721.svs,2 +CRC_2722,CRC_2722.svs,2 +CRC_2723,CRC_2723.svs,0 +CRC_2724,CRC_2724.svs,0 +CRC_2725,CRC_2725.svs,2 +CRC_2726,CRC_2726.svs,1 +CRC_2727,CRC_2727.svs,2 +CRC_2728,CRC_2728.svs,2 +CRC_2729,CRC_2729.svs,1 +CRC_2730,CRC_2730.svs,0 +CRC_2731,CRC_2731.svs,1 +CRC_2732,CRC_2732.svs,2 +CRC_2733,CRC_2733.svs,1 +CRC_2734,CRC_2734.svs,2 +CRC_2735,CRC_2735.svs,0 +CRC_2736,CRC_2736.svs,0 +CRC_2737,CRC_2737.svs,1 +CRC_2738,CRC_2738.svs,0 +CRC_2739,CRC_2739.svs,2 +CRC_2740,CRC_2740.svs,0 +CRC_2741,CRC_2741.svs,1 +CRC_2742,CRC_2742.svs,0 +CRC_2743,CRC_2743.svs,2 +CRC_2744,CRC_2744.svs,2 +CRC_2745,CRC_2745.svs,1 +CRC_2746,CRC_2746.svs,1 +CRC_2747,CRC_2747.svs,1 +CRC_2748,CRC_2748.svs,2 +CRC_2749,CRC_2749.svs,1 +CRC_2750,CRC_2750.svs,1 +CRC_2751,CRC_2751.svs,2 +CRC_2752,CRC_2752.svs,2 +CRC_2753,CRC_2753.svs,1 +CRC_2754,CRC_2754.svs,1 +CRC_2755,CRC_2755.svs,1 +CRC_2756,CRC_2756.svs,0 +CRC_2757,CRC_2757.svs,2 +CRC_2758,CRC_2758.svs,1 +CRC_2759,CRC_2759.svs,2 +CRC_2760,CRC_2760.svs,1 +CRC_2761,CRC_2761.svs,2 +CRC_2762,CRC_2762.svs,1 +CRC_2763,CRC_2763.svs,1 +CRC_2764,CRC_2764.svs,2 +CRC_2765,CRC_2765.svs,1 +CRC_2766,CRC_2766.svs,1 +CRC_2767,CRC_2767.svs,2 +CRC_2768,CRC_2768.svs,0 +CRC_2769,CRC_2769.svs,1 +CRC_2770,CRC_2770.svs,1 +CRC_2771,CRC_2771.svs,2 +CRC_2772,CRC_2772.svs,1 +CRC_2773,CRC_2773.svs,1 +CRC_2774,CRC_2774.svs,1 +CRC_2775,CRC_2775.svs,1 +CRC_2776,CRC_2776.svs,0 +CRC_2777,CRC_2777.svs,1 +CRC_2778,CRC_2778.svs,1 +CRC_2779,CRC_2779.svs,1 +CRC_2780,CRC_2780.svs,2 +CRC_2781,CRC_2781.svs,2 +CRC_2782,CRC_2782.svs,1 +CRC_2783,CRC_2783.svs,2 +CRC_2784,CRC_2784.svs,2 +CRC_2785,CRC_2785.svs,0 +CRC_2786,CRC_2786.svs,1 +CRC_2787,CRC_2787.svs,1 +CRC_2788,CRC_2788.svs,2 +CRC_2789,CRC_2789.svs,0 +CRC_2790,CRC_2790.svs,1 +CRC_2791,CRC_2791.svs,1 +CRC_2792,CRC_2792.svs,2 +CRC_2793,CRC_2793.svs,1 +CRC_2794,CRC_2794.svs,2 +CRC_2795,CRC_2795.svs,1 +CRC_2796,CRC_2796.svs,0 +CRC_2797,CRC_2797.svs,1 +CRC_2798,CRC_2798.svs,1 +CRC_2799,CRC_2799.svs,1 +CRC_2800,CRC_2800.svs,0 +CRC_2801,CRC_2801.svs,2 +CRC_2802,CRC_2802.svs,2 +CRC_2803,CRC_2803.svs,0 +CRC_2804,CRC_2804.svs,2 +CRC_2805,CRC_2805.svs,2 +CRC_2806,CRC_2806.svs,1 +CRC_2807,CRC_2807.svs,2 +CRC_2808,CRC_2808.svs,1 +CRC_2809,CRC_2809.svs,2 +CRC_2810,CRC_2810.svs,2 +CRC_2811,CRC_2811.svs,1 +CRC_2812,CRC_2812.svs,2 +CRC_2813,CRC_2813.svs,0 +CRC_2814,CRC_2814.svs,1 +CRC_2815,CRC_2815.svs,1 +CRC_2816,CRC_2816.svs,1 +CRC_2817,CRC_2817.svs,1 +CRC_2818,CRC_2818.svs,2 +CRC_2819,CRC_2819.svs,2 +CRC_2820,CRC_2820.svs,1 +CRC_2821,CRC_2821.svs,0 +CRC_2822,CRC_2822.svs,1 +CRC_2823,CRC_2823.svs,1 +CRC_2824,CRC_2824.svs,2 +CRC_2825,CRC_2825.svs,1 +CRC_2826,CRC_2826.svs,1 +CRC_2827,CRC_2827.svs,1 +CRC_2828,CRC_2828.svs,1 +CRC_2829,CRC_2829.svs,0 +CRC_2830,CRC_2830.svs,0 +CRC_2831,CRC_2831.svs,1 +CRC_2832,CRC_2832.svs,0 +CRC_2833,CRC_2833.svs,1 +CRC_2834,CRC_2834.svs,1 +CRC_2835,CRC_2835.svs,2 +CRC_2836,CRC_2836.svs,1 +CRC_2837,CRC_2837.svs,1 +CRC_2838,CRC_2838.svs,1 +CRC_2839,CRC_2839.svs,1 +CRC_2840,CRC_2840.svs,1 +CRC_2841,CRC_2841.svs,1 +CRC_2842,CRC_2842.svs,1 +CRC_2843,CRC_2843.svs,1 +CRC_2844,CRC_2844.svs,1 +CRC_2845,CRC_2845.svs,2 +CRC_2846,CRC_2846.svs,1 +CRC_2847,CRC_2847.svs,1 +CRC_2848,CRC_2848.svs,2 +CRC_2849,CRC_2849.svs,1 +CRC_2850,CRC_2850.svs,2 +CRC_2851,CRC_2851.svs,1 +CRC_2852,CRC_2852.svs,0 +CRC_2853,CRC_2853.svs,1 +CRC_2854,CRC_2854.svs,0 +CRC_2855,CRC_2855.svs,2 +CRC_2856,CRC_2856.svs,1 +CRC_2857,CRC_2857.svs,1 +CRC_2858,CRC_2858.svs,1 +CRC_2859,CRC_2859.svs,1 +CRC_2860,CRC_2860.svs,1 +CRC_2861,CRC_2861.svs,0 +CRC_2862,CRC_2862.svs,1 +CRC_2863,CRC_2863.svs,1 +CRC_2864,CRC_2864.svs,1 +CRC_2865,CRC_2865.svs,0 +CRC_2866,CRC_2866.svs,0 +CRC_2867,CRC_2867.svs,2 +CRC_2868,CRC_2868.svs,1 +CRC_2869,CRC_2869.svs,2 +CRC_2870,CRC_2870.svs,2 +CRC_2871,CRC_2871.svs,2 +CRC_2872,CRC_2872.svs,1 +CRC_2873,CRC_2873.svs,1 +CRC_2874,CRC_2874.svs,1 +CRC_2875,CRC_2875.svs,1 +CRC_2876,CRC_2876.svs,2 +CRC_2877,CRC_2877.svs,1 +CRC_2878,CRC_2878.svs,0 +CRC_2879,CRC_2879.svs,1 +CRC_2880,CRC_2880.svs,1 +CRC_2881,CRC_2881.svs,1 +CRC_2882,CRC_2882.svs,1 +CRC_2883,CRC_2883.svs,0 +CRC_2884,CRC_2884.svs,0 +CRC_2885,CRC_2885.svs,2 +CRC_2886,CRC_2886.svs,1 +CRC_2887,CRC_2887.svs,1 +CRC_2888,CRC_2888.svs,0 +CRC_2889,CRC_2889.svs,1 +CRC_2890,CRC_2890.svs,1 +CRC_2891,CRC_2891.svs,0 +CRC_2892,CRC_2892.svs,1 +CRC_2893,CRC_2893.svs,1 +CRC_2894,CRC_2894.svs,2 +CRC_2895,CRC_2895.svs,2 +CRC_2896,CRC_2896.svs,1 +CRC_2897,CRC_2897.svs,0 +CRC_2898,CRC_2898.svs,1 +CRC_2899,CRC_2899.svs,2 +CRC_2900,CRC_2900.svs,1 +CRC_2901,CRC_2901.svs,1 +CRC_2902,CRC_2902.svs,1 +CRC_2903,CRC_2903.svs,2 +CRC_2904,CRC_2904.svs,1 +CRC_2905,CRC_2905.svs,1 +CRC_2906,CRC_2906.svs,2 +CRC_2907,CRC_2907.svs,2 +CRC_2908,CRC_2908.svs,0 +CRC_2909,CRC_2909.svs,1 +CRC_2910,CRC_2910.svs,1 +CRC_2911,CRC_2911.svs,1 +CRC_2912,CRC_2912.svs,2 +CRC_2913,CRC_2913.svs,2 +CRC_2914,CRC_2914.svs,1 +CRC_2915,CRC_2915.svs,1 +CRC_2916,CRC_2916.svs,1 +CRC_2917,CRC_2917.svs,1 +CRC_2918,CRC_2918.svs,0 +CRC_2919,CRC_2919.svs,1 +CRC_2920,CRC_2920.svs,2 +CRC_2921,CRC_2921.svs,1 +CRC_2922,CRC_2922.svs,2 +CRC_2923,CRC_2923.svs,2 +CRC_2924,CRC_2924.svs,1 +CRC_2925,CRC_2925.svs,0 +CRC_2926,CRC_2926.svs,1 +CRC_2927,CRC_2927.svs,1 +CRC_2928,CRC_2928.svs,2 +CRC_2929,CRC_2929.svs,1 +CRC_2930,CRC_2930.svs,0 +CRC_2931,CRC_2931.svs,2 +CRC_2932,CRC_2932.svs,1 +CRC_2933,CRC_2933.svs,1 +CRC_2934,CRC_2934.svs,0 +CRC_2935,CRC_2935.svs,0 +CRC_2936,CRC_2936.svs,1 +CRC_2937,CRC_2937.svs,1 +CRC_2938,CRC_2938.svs,1 +CRC_2939,CRC_2939.svs,2 +CRC_2940,CRC_2940.svs,2 +CRC_2941,CRC_2941.svs,1 +CRC_2942,CRC_2942.svs,2 +CRC_2943,CRC_2943.svs,0 +CRC_2944,CRC_2944.svs,1 +CRC_2945,CRC_2945.svs,0 +CRC_2946,CRC_2946.svs,1 +CRC_2947,CRC_2947.svs,2 +CRC_2948,CRC_2948.svs,0 +CRC_2949,CRC_2949.svs,1 +CRC_2950,CRC_2950.svs,1 +CRC_2951,CRC_2951.svs,1 +CRC_2952,CRC_2952.svs,1 +CRC_2953,CRC_2953.svs,2 +CRC_2954,CRC_2954.svs,1 +CRC_2955,CRC_2955.svs,2 +CRC_2956,CRC_2956.svs,1 +CRC_2957,CRC_2957.svs,1 +CRC_2958,CRC_2958.svs,1 +CRC_2959,CRC_2959.svs,1 +CRC_2960,CRC_2960.svs,1 +CRC_2961,CRC_2961.svs,1 +CRC_2962,CRC_2962.svs,1 +CRC_2963,CRC_2963.svs,0 +CRC_2964,CRC_2964.svs,2 +CRC_2965,CRC_2965.svs,2 +CRC_2966,CRC_2966.svs,2 +CRC_2967,CRC_2967.svs,0 +CRC_2968,CRC_2968.svs,2 +CRC_2969,CRC_2969.svs,1 +CRC_2970,CRC_2970.svs,0 +CRC_2971,CRC_2971.svs,1 +CRC_2972,CRC_2972.svs,1 +CRC_2973,CRC_2973.svs,1 +CRC_2974,CRC_2974.svs,1 +CRC_2975,CRC_2975.svs,1 +CRC_2976,CRC_2976.svs,1 +CRC_2977,CRC_2977.svs,0 +CRC_2978,CRC_2978.svs,0 +CRC_2979,CRC_2979.svs,1 +CRC_2980,CRC_2980.svs,1 +CRC_2981,CRC_2981.svs,0 +CRC_2982,CRC_2982.svs,1 +CRC_2983,CRC_2983.svs,1 +CRC_2984,CRC_2984.svs,2 +CRC_2985,CRC_2985.svs,2 +CRC_2986,CRC_2986.svs,1 +CRC_2987,CRC_2987.svs,1 +CRC_2988,CRC_2988.svs,1 +CRC_2989,CRC_2989.svs,1 +CRC_2990,CRC_2990.svs,1 +CRC_2991,CRC_2991.svs,2 +CRC_2992,CRC_2992.svs,1 +CRC_2993,CRC_2993.svs,1 +CRC_2994,CRC_2994.svs,1 +CRC_2995,CRC_2995.svs,1 +CRC_2996,CRC_2996.svs,2 +CRC_2997,CRC_2997.svs,1 +CRC_2998,CRC_2998.svs,1 +CRC_2999,CRC_2999.svs,1 +CRC_3000,CRC_3000.svs,0 +CRC_3001,CRC_3001.svs,1 +CRC_3002,CRC_3002.svs,1 +CRC_3003,CRC_3003.svs,2 +CRC_3004,CRC_3004.svs,1 +CRC_3005,CRC_3005.svs,2 +CRC_3006,CRC_3006.svs,1 +CRC_3007,CRC_3007.svs,2 +CRC_3008,CRC_3008.svs,1 +CRC_3009,CRC_3009.svs,2 +CRC_3010,CRC_3010.svs,0 +CRC_3011,CRC_3011.svs,2 +CRC_3012,CRC_3012.svs,2 +CRC_3013,CRC_3013.svs,2 +CRC_3014,CRC_3014.svs,1 +CRC_3015,CRC_3015.svs,2 +CRC_3016,CRC_3016.svs,1 +CRC_3017,CRC_3017.svs,2 +CRC_3018,CRC_3018.svs,2 +CRC_3019,CRC_3019.svs,1 +CRC_3020,CRC_3020.svs,1 +CRC_3021,CRC_3021.svs,1 +CRC_3022,CRC_3022.svs,1 +CRC_3023,CRC_3023.svs,1 +CRC_3024,CRC_3024.svs,1 +CRC_3025,CRC_3025.svs,0 +CRC_3026,CRC_3026.svs,2 +CRC_3027,CRC_3027.svs,2 +CRC_3028,CRC_3028.svs,0 +CRC_3029,CRC_3029.svs,0 +CRC_3030,CRC_3030.svs,1 +CRC_3031,CRC_3031.svs,1 +CRC_3032,CRC_3032.svs,1 +CRC_3033,CRC_3033.svs,1 +CRC_3034,CRC_3034.svs,1 +CRC_3035,CRC_3035.svs,1 +CRC_3036,CRC_3036.svs,1 +CRC_3037,CRC_3037.svs,1 +CRC_3038,CRC_3038.svs,1 +CRC_3039,CRC_3039.svs,2 +CRC_3040,CRC_3040.svs,2 +CRC_3041,CRC_3041.svs,2 +CRC_3042,CRC_3042.svs,1 +CRC_3043,CRC_3043.svs,2 +CRC_3044,CRC_3044.svs,2 +CRC_3045,CRC_3045.svs,1 +CRC_3046,CRC_3046.svs,1 +CRC_3047,CRC_3047.svs,1 +CRC_3048,CRC_3048.svs,1 +CRC_3049,CRC_3049.svs,1 +CRC_3050,CRC_3050.svs,1 +CRC_3051,CRC_3051.svs,1 +CRC_3052,CRC_3052.svs,1 +CRC_3053,CRC_3053.svs,2 +CRC_3054,CRC_3054.svs,1 +CRC_3055,CRC_3055.svs,2 +CRC_3056,CRC_3056.svs,1 +CRC_3057,CRC_3057.svs,0 +CRC_3058,CRC_3058.svs,1 +CRC_3059,CRC_3059.svs,1 +CRC_3060,CRC_3060.svs,1 +CRC_3061,CRC_3061.svs,1 +CRC_3062,CRC_3062.svs,1 +CRC_3063,CRC_3063.svs,2 +CRC_3064,CRC_3064.svs,0 +CRC_3065,CRC_3065.svs,1 +CRC_3066,CRC_3066.svs,1 +CRC_3067,CRC_3067.svs,0 +CRC_3068,CRC_3068.svs,2 +CRC_3069,CRC_3069.svs,2 +CRC_3070,CRC_3070.svs,2 +CRC_3071,CRC_3071.svs,0 +CRC_3072,CRC_3072.svs,2 +CRC_3073,CRC_3073.svs,2 +CRC_3074,CRC_3074.svs,1 +CRC_3075,CRC_3075.svs,0 +CRC_3076,CRC_3076.svs,2 +CRC_3077,CRC_3077.svs,2 +CRC_3078,CRC_3078.svs,2 +CRC_3079,CRC_3079.svs,1 +CRC_3080,CRC_3080.svs,1 +CRC_3081,CRC_3081.svs,2 +CRC_3082,CRC_3082.svs,1 +CRC_3083,CRC_3083.svs,0 +CRC_3084,CRC_3084.svs,1 +CRC_3085,CRC_3085.svs,2 +CRC_3086,CRC_3086.svs,1 +CRC_3087,CRC_3087.svs,0 +CRC_3088,CRC_3088.svs,2 +CRC_3089,CRC_3089.svs,2 +CRC_3090,CRC_3090.svs,2 +CRC_3091,CRC_3091.svs,1 +CRC_3092,CRC_3092.svs,1 +CRC_3093,CRC_3093.svs,2 +CRC_3094,CRC_3094.svs,1 +CRC_3095,CRC_3095.svs,1 +CRC_3096,CRC_3096.svs,1 +CRC_3097,CRC_3097.svs,1 +CRC_3098,CRC_3098.svs,1 +CRC_3099,CRC_3099.svs,0 +CRC_3100,CRC_3100.svs,1 +CRC_3101,CRC_3101.svs,2 +CRC_3102,CRC_3102.svs,2 +CRC_3103,CRC_3103.svs,1 +CRC_3104,CRC_3104.svs,2 +CRC_3105,CRC_3105.svs,2 +CRC_3106,CRC_3106.svs,2 +CRC_3107,CRC_3107.svs,1 +CRC_3108,CRC_3108.svs,2 +CRC_3109,CRC_3109.svs,1 +CRC_3110,CRC_3110.svs,2 +CRC_3111,CRC_3111.svs,2 +CRC_3112,CRC_3112.svs,1 +CRC_3113,CRC_3113.svs,0 +CRC_3114,CRC_3114.svs,1 +CRC_3115,CRC_3115.svs,1 +CRC_3116,CRC_3116.svs,2 +CRC_3117,CRC_3117.svs,1 +CRC_3118,CRC_3118.svs,2 +CRC_3119,CRC_3119.svs,0 +CRC_3120,CRC_3120.svs,2 +CRC_3121,CRC_3121.svs,0 +CRC_3122,CRC_3122.svs,1 +CRC_3123,CRC_3123.svs,1 +CRC_3124,CRC_3124.svs,2 +CRC_3125,CRC_3125.svs,2 +CRC_3126,CRC_3126.svs,1 +CRC_3127,CRC_3127.svs,0 +CRC_3128,CRC_3128.svs,0 +CRC_3129,CRC_3129.svs,1 +CRC_3130,CRC_3130.svs,2 +CRC_3131,CRC_3131.svs,1 +CRC_3132,CRC_3132.svs,1 +CRC_3133,CRC_3133.svs,1 +CRC_3134,CRC_3134.svs,2 +CRC_3135,CRC_3135.svs,0 +CRC_3136,CRC_3136.svs,2 +CRC_3137,CRC_3137.svs,1 +CRC_3138,CRC_3138.svs,2 +CRC_3139,CRC_3139.svs,1 +CRC_3140,CRC_3140.svs,2 +CRC_3141,CRC_3141.svs,1 +CRC_3142,CRC_3142.svs,1 +CRC_3143,CRC_3143.svs,1 +CRC_3144,CRC_3144.svs,2 +CRC_3145,CRC_3145.svs,2 +CRC_3146,CRC_3146.svs,1 +CRC_3147,CRC_3147.svs,1 +CRC_3148,CRC_3148.svs,0 +CRC_3149,CRC_3149.svs,1 +CRC_3150,CRC_3150.svs,0 +CRC_3151,CRC_3151.svs,1 +CRC_3152,CRC_3152.svs,1 +CRC_3153,CRC_3153.svs,1 +CRC_3154,CRC_3154.svs,1 +CRC_3155,CRC_3155.svs,2 +CRC_3156,CRC_3156.svs,1 +CRC_3157,CRC_3157.svs,1 +CRC_3158,CRC_3158.svs,1 +CRC_3159,CRC_3159.svs,2 +CRC_3160,CRC_3160.svs,2 +CRC_3161,CRC_3161.svs,2 +CRC_3162,CRC_3162.svs,2 +CRC_3163,CRC_3163.svs,0 +CRC_3164,CRC_3164.svs,1 +CRC_3165,CRC_3165.svs,2 +CRC_3166,CRC_3166.svs,2 +CRC_3167,CRC_3167.svs,2 +CRC_3168,CRC_3168.svs,1 +CRC_3169,CRC_3169.svs,2 +CRC_3170,CRC_3170.svs,1 +CRC_3171,CRC_3171.svs,1 +CRC_3172,CRC_3172.svs,1 +CRC_3173,CRC_3173.svs,1 +CRC_3174,CRC_3174.svs,1 +CRC_3175,CRC_3175.svs,1 +CRC_3176,CRC_3176.svs,2 +CRC_3177,CRC_3177.svs,1 +CRC_3178,CRC_3178.svs,0 +CRC_3179,CRC_3179.svs,2 +CRC_3180,CRC_3180.svs,1 +CRC_3181,CRC_3181.svs,1 +CRC_3182,CRC_3182.svs,0 +CRC_3183,CRC_3183.svs,1 +CRC_3184,CRC_3184.svs,1 +CRC_3185,CRC_3185.svs,2 +CRC_3186,CRC_3186.svs,1 +CRC_3187,CRC_3187.svs,1 +CRC_3188,CRC_3188.svs,2 +CRC_3189,CRC_3189.svs,1 +CRC_3190,CRC_3190.svs,1 +CRC_3191,CRC_3191.svs,0 +CRC_3192,CRC_3192.svs,2 +CRC_3193,CRC_3193.svs,1 +CRC_3194,CRC_3194.svs,2 +CRC_3195,CRC_3195.svs,2 +CRC_3196,CRC_3196.svs,1 +CRC_3197,CRC_3197.svs,2 +CRC_3198,CRC_3198.svs,1 +CRC_3199,CRC_3199.svs,2 +CRC_3200,CRC_3200.svs,1 +CRC_3201,CRC_3201.svs,1 +CRC_3202,CRC_3202.svs,0 +CRC_3203,CRC_3203.svs,2 +CRC_3204,CRC_3204.svs,0 +CRC_3205,CRC_3205.svs,0 +CRC_3206,CRC_3206.svs,1 +CRC_3207,CRC_3207.svs,1 +CRC_3208,CRC_3208.svs,0 +CRC_3209,CRC_3209.svs,2 +CRC_3210,CRC_3210.svs,1 +CRC_3211,CRC_3211.svs,1 +CRC_3212,CRC_3212.svs,2 +CRC_3213,CRC_3213.svs,2 +CRC_3214,CRC_3214.svs,1 +CRC_3215,CRC_3215.svs,1 +CRC_3216,CRC_3216.svs,2 +CRC_3217,CRC_3217.svs,2 +CRC_3218,CRC_3218.svs,0 +CRC_3219,CRC_3219.svs,1 +CRC_3220,CRC_3220.svs,1 +CRC_3221,CRC_3221.svs,2 +CRC_3222,CRC_3222.svs,1 +CRC_3223,CRC_3223.svs,2 +CRC_3224,CRC_3224.svs,2 +CRC_3225,CRC_3225.svs,1 +CRC_3226,CRC_3226.svs,1 +CRC_3227,CRC_3227.svs,1 +CRC_3228,CRC_3228.svs,2 +CRC_3229,CRC_3229.svs,1 +CRC_3230,CRC_3230.svs,1 +CRC_3231,CRC_3231.svs,2 +CRC_3232,CRC_3232.svs,1 +CRC_3233,CRC_3233.svs,0 +CRC_3234,CRC_3234.svs,0 +CRC_3235,CRC_3235.svs,1 +CRC_3236,CRC_3236.svs,2 +CRC_3237,CRC_3237.svs,2 +CRC_3238,CRC_3238.svs,1 +CRC_3239,CRC_3239.svs,1 +CRC_3240,CRC_3240.svs,1 +CRC_3241,CRC_3241.svs,2 +CRC_3242,CRC_3242.svs,1 +CRC_3243,CRC_3243.svs,0 +CRC_3244,CRC_3244.svs,2 +CRC_3245,CRC_3245.svs,0 +CRC_3246,CRC_3246.svs,0 +CRC_3247,CRC_3247.svs,2 +CRC_3248,CRC_3248.svs,2 +CRC_3249,CRC_3249.svs,1 +CRC_3250,CRC_3250.svs,1 +CRC_3251,CRC_3251.svs,1 +CRC_3252,CRC_3252.svs,1 +CRC_3253,CRC_3253.svs,1 +CRC_3254,CRC_3254.svs,1 +CRC_3255,CRC_3255.svs,1 +CRC_3256,CRC_3256.svs,0 +CRC_3257,CRC_3257.svs,1 +CRC_3258,CRC_3258.svs,1 +CRC_3259,CRC_3259.svs,1 +CRC_3260,CRC_3260.svs,1 +CRC_3261,CRC_3261.svs,1 +CRC_3262,CRC_3262.svs,2 +CRC_3263,CRC_3263.svs,1 +CRC_3264,CRC_3264.svs,1 +CRC_3265,CRC_3265.svs,1 +CRC_3266,CRC_3266.svs,1 +CRC_3267,CRC_3267.svs,1 +CRC_3268,CRC_3268.svs,1 +CRC_3269,CRC_3269.svs,0 +CRC_3270,CRC_3270.svs,2 +CRC_3271,CRC_3271.svs,2 +CRC_3272,CRC_3272.svs,1 +CRC_3273,CRC_3273.svs,1 +CRC_3274,CRC_3274.svs,0 +CRC_3275,CRC_3275.svs,1 +CRC_3276,CRC_3276.svs,1 +CRC_3277,CRC_3277.svs,1 +CRC_3278,CRC_3278.svs,1 +CRC_3279,CRC_3279.svs,1 +CRC_3280,CRC_3280.svs,1 +CRC_3281,CRC_3281.svs,1 +CRC_3282,CRC_3282.svs,1 +CRC_3283,CRC_3283.svs,2 +CRC_3284,CRC_3284.svs,1 +CRC_3285,CRC_3285.svs,1 +CRC_3286,CRC_3286.svs,0 +CRC_3287,CRC_3287.svs,0 +CRC_3288,CRC_3288.svs,1 +CRC_3289,CRC_3289.svs,0 +CRC_3290,CRC_3290.svs,2 +CRC_3291,CRC_3291.svs,1 +CRC_3292,CRC_3292.svs,1 +CRC_3293,CRC_3293.svs,1 +CRC_3294,CRC_3294.svs,1 +CRC_3295,CRC_3295.svs,1 +CRC_3296,CRC_3296.svs,1 +CRC_3297,CRC_3297.svs,0 +CRC_3298,CRC_3298.svs,1 +CRC_3299,CRC_3299.svs,2 +CRC_3300,CRC_3300.svs,2 +CRC_3301,CRC_3301.svs,2 +CRC_3302,CRC_3302.svs,1 +CRC_3303,CRC_3303.svs,1 +CRC_3304,CRC_3304.svs,2 +CRC_3305,CRC_3305.svs,1 +CRC_3306,CRC_3306.svs,1 +CRC_3307,CRC_3307.svs,0 +CRC_3308,CRC_3308.svs,2 +CRC_3309,CRC_3309.svs,0 +CRC_3310,CRC_3310.svs,2 +CRC_3311,CRC_3311.svs,1 +CRC_3312,CRC_3312.svs,1 +CRC_3313,CRC_3313.svs,1 +CRC_3314,CRC_3314.svs,1 +CRC_3315,CRC_3315.svs,1 +CRC_3316,CRC_3316.svs,1 +CRC_3317,CRC_3317.svs,1 +CRC_3318,CRC_3318.svs,2 +CRC_3319,CRC_3319.svs,1 +CRC_3320,CRC_3320.svs,1 +CRC_3321,CRC_3321.svs,2 +CRC_3322,CRC_3322.svs,0 +CRC_3323,CRC_3323.svs,0 +CRC_3324,CRC_3324.svs,1 +CRC_3325,CRC_3325.svs,2 +CRC_3326,CRC_3326.svs,1 +CRC_3327,CRC_3327.svs,0 +CRC_3328,CRC_3328.svs,1 +CRC_3329,CRC_3329.svs,2 +CRC_3330,CRC_3330.svs,2 +CRC_3331,CRC_3331.svs,1 +CRC_3332,CRC_3332.svs,1 +CRC_3333,CRC_3333.svs,1 +CRC_3334,CRC_3334.svs,1 +CRC_3335,CRC_3335.svs,1 +CRC_3336,CRC_3336.svs,2 +CRC_3337,CRC_3337.svs,1 +CRC_3338,CRC_3338.svs,1 +CRC_3339,CRC_3339.svs,1 +CRC_3340,CRC_3340.svs,1 +CRC_3341,CRC_3341.svs,1 +CRC_3342,CRC_3342.svs,2 +CRC_3343,CRC_3343.svs,1 +CRC_3344,CRC_3344.svs,1 +CRC_3345,CRC_3345.svs,1 +CRC_3346,CRC_3346.svs,1 +CRC_3347,CRC_3347.svs,1 +CRC_3348,CRC_3348.svs,2 +CRC_3349,CRC_3349.svs,1 +CRC_3350,CRC_3350.svs,1 +CRC_3351,CRC_3351.svs,2 +CRC_3352,CRC_3352.svs,2 +CRC_3353,CRC_3353.svs,2 +CRC_3354,CRC_3354.svs,1 +CRC_3355,CRC_3355.svs,1 +CRC_3356,CRC_3356.svs,2 +CRC_3357,CRC_3357.svs,2 +CRC_3358,CRC_3358.svs,2 +CRC_3359,CRC_3359.svs,0 +CRC_3360,CRC_3360.svs,2 +CRC_3361,CRC_3361.svs,1 +CRC_3362,CRC_3362.svs,1 +CRC_3363,CRC_3363.svs,1 +CRC_3364,CRC_3364.svs,2 +CRC_3365,CRC_3365.svs,1 +CRC_3366,CRC_3366.svs,1 +CRC_3367,CRC_3367.svs,0 +CRC_3368,CRC_3368.svs,0 +CRC_3369,CRC_3369.svs,1 +CRC_3370,CRC_3370.svs,1 +CRC_3371,CRC_3371.svs,1 +CRC_3372,CRC_3372.svs,1 +CRC_3373,CRC_3373.svs,1 +CRC_3374,CRC_3374.svs,1 +CRC_3375,CRC_3375.svs,1 +CRC_3376,CRC_3376.svs,1 +CRC_3377,CRC_3377.svs,1 +CRC_3378,CRC_3378.svs,1 +CRC_3379,CRC_3379.svs,1 +CRC_3380,CRC_3380.svs,1 +CRC_3381,CRC_3381.svs,1 +CRC_3382,CRC_3382.svs,2 +CRC_3383,CRC_3383.svs,1 +CRC_3384,CRC_3384.svs,1 +CRC_3385,CRC_3385.svs,1 +CRC_3386,CRC_3386.svs,1 +CRC_3387,CRC_3387.svs,0 +CRC_3388,CRC_3388.svs,2 +CRC_3389,CRC_3389.svs,1 +CRC_3390,CRC_3390.svs,2 +CRC_3391,CRC_3391.svs,1 +CRC_3392,CRC_3392.svs,2 +CRC_3393,CRC_3393.svs,1 +CRC_3394,CRC_3394.svs,2 +CRC_3395,CRC_3395.svs,1 +CRC_3396,CRC_3396.svs,0 +CRC_3397,CRC_3397.svs,2 +CRC_3398,CRC_3398.svs,1 +CRC_3399,CRC_3399.svs,0 +CRC_3400,CRC_3400.svs,1 +CRC_3401,CRC_3401.svs,1 +CRC_3402,CRC_3402.svs,2 +CRC_3403,CRC_3403.svs,2 +CRC_3404,CRC_3404.svs,0 +CRC_3405,CRC_3405.svs,2 +CRC_3406,CRC_3406.svs,1 +CRC_3407,CRC_3407.svs,1 +CRC_3408,CRC_3408.svs,2 +CRC_3409,CRC_3409.svs,1 +CRC_3410,CRC_3410.svs,1 +CRC_3411,CRC_3411.svs,2 +CRC_3412,CRC_3412.svs,2 +CRC_3413,CRC_3413.svs,2 +CRC_3414,CRC_3414.svs,1 +CRC_3415,CRC_3415.svs,2 +CRC_3416,CRC_3416.svs,2 +CRC_3417,CRC_3417.svs,1 +CRC_3418,CRC_3418.svs,1 +CRC_3419,CRC_3419.svs,1 +CRC_3420,CRC_3420.svs,1 +CRC_3421,CRC_3421.svs,1 +CRC_3422,CRC_3422.svs,1 +CRC_3423,CRC_3423.svs,2 +CRC_3424,CRC_3424.svs,2 +CRC_3425,CRC_3425.svs,1 +CRC_3426,CRC_3426.svs,0 +CRC_3427,CRC_3427.svs,1 +CRC_3428,CRC_3428.svs,0 +CRC_3429,CRC_3429.svs,1 +CRC_3430,CRC_3430.svs,2 +CRC_3431,CRC_3431.svs,1 +CRC_3432,CRC_3432.svs,1 +CRC_3433,CRC_3433.svs,1 +CRC_3434,CRC_3434.svs,1 +CRC_3435,CRC_3435.svs,1 +CRC_3436,CRC_3436.svs,1 +CRC_3437,CRC_3437.svs,2 +CRC_3438,CRC_3438.svs,1 +CRC_3439,CRC_3439.svs,0 +CRC_3440,CRC_3440.svs,1 +CRC_3441,CRC_3441.svs,2 +CRC_3442,CRC_3442.svs,0 +CRC_3443,CRC_3443.svs,2 +CRC_3444,CRC_3444.svs,1 +CRC_3445,CRC_3445.svs,0 +CRC_3446,CRC_3446.svs,1 +CRC_3447,CRC_3447.svs,2 +CRC_3448,CRC_3448.svs,2 +CRC_3449,CRC_3449.svs,2 +CRC_3450,CRC_3450.svs,1 +CRC_3451,CRC_3451.svs,0 +CRC_3452,CRC_3452.svs,2 +CRC_3453,CRC_3453.svs,1 +CRC_3454,CRC_3454.svs,2 +CRC_3455,CRC_3455.svs,1 +CRC_3456,CRC_3456.svs,1 +CRC_3457,CRC_3457.svs,1 +CRC_3458,CRC_3458.svs,1 +CRC_3459,CRC_3459.svs,2 +CRC_3460,CRC_3460.svs,2 +CRC_3461,CRC_3461.svs,1 +CRC_3462,CRC_3462.svs,2 +CRC_3463,CRC_3463.svs,1 +CRC_3464,CRC_3464.svs,1 +CRC_3465,CRC_3465.svs,2 +CRC_3466,CRC_3466.svs,1 +CRC_3467,CRC_3467.svs,0 +CRC_3468,CRC_3468.svs,2 +CRC_3469,CRC_3469.svs,2 +CRC_3470,CRC_3470.svs,2 +CRC_3471,CRC_3471.svs,0 +CRC_3472,CRC_3472.svs,2 +CRC_3473,CRC_3473.svs,1 +CRC_3474,CRC_3474.svs,1 +CRC_3475,CRC_3475.svs,1 +CRC_3476,CRC_3476.svs,1 +CRC_3477,CRC_3477.svs,1 +CRC_3478,CRC_3478.svs,1 +CRC_3479,CRC_3479.svs,1 +CRC_3480,CRC_3480.svs,2 +CRC_3481,CRC_3481.svs,2 +CRC_3482,CRC_3482.svs,2 +CRC_3483,CRC_3483.svs,2 +CRC_3484,CRC_3484.svs,1 +CRC_3485,CRC_3485.svs,1 +CRC_3486,CRC_3486.svs,1 +CRC_3487,CRC_3487.svs,1 +CRC_3488,CRC_3488.svs,1 +CRC_3489,CRC_3489.svs,1 +CRC_3490,CRC_3490.svs,1 +CRC_3491,CRC_3491.svs,1 +CRC_3492,CRC_3492.svs,1 +CRC_3493,CRC_3493.svs,1 +CRC_3494,CRC_3494.svs,1 +CRC_3495,CRC_3495.svs,1 +CRC_3496,CRC_3496.svs,1 +CRC_3497,CRC_3497.svs,2 +CRC_3498,CRC_3498.svs,2 +CRC_3499,CRC_3499.svs,1 +CRC_3500,CRC_3500.svs,1 +CRC_3501,CRC_3501.svs,1 +CRC_3502,CRC_3502.svs,2 +CRC_3503,CRC_3503.svs,2 +CRC_3504,CRC_3504.svs,1 +CRC_3505,CRC_3505.svs,1 +CRC_3506,CRC_3506.svs,2 +CRC_3507,CRC_3507.svs,2 +CRC_3508,CRC_3508.svs,1 +CRC_3509,CRC_3509.svs,1 +CRC_3510,CRC_3510.svs,2 +CRC_3511,CRC_3511.svs,1 +CRC_3512,CRC_3512.svs,1 +CRC_3513,CRC_3513.svs,1 +CRC_3514,CRC_3514.svs,1 +CRC_3515,CRC_3515.svs,1 +CRC_3516,CRC_3516.svs,1 +CRC_3517,CRC_3517.svs,1 +CRC_3518,CRC_3518.svs,1 +CRC_3519,CRC_3519.svs,1 +CRC_3520,CRC_3520.svs,2 +CRC_3521,CRC_3521.svs,1 +CRC_3522,CRC_3522.svs,1 +CRC_3523,CRC_3523.svs,1 +CRC_3524,CRC_3524.svs,1 +CRC_3525,CRC_3525.svs,1 +CRC_3526,CRC_3526.svs,1 +CRC_3527,CRC_3527.svs,0 +CRC_3528,CRC_3528.svs,1 +CRC_3529,CRC_3529.svs,1 +CRC_3530,CRC_3530.svs,2 +CRC_3531,CRC_3531.svs,2 +CRC_3532,CRC_3532.svs,2 +CRC_3533,CRC_3533.svs,1 +CRC_3534,CRC_3534.svs,2 +CRC_3535,CRC_3535.svs,1 +CRC_3536,CRC_3536.svs,2 +CRC_3537,CRC_3537.svs,0 +CRC_3538,CRC_3538.svs,2 +CRC_3539,CRC_3539.svs,1 +CRC_3540,CRC_3540.svs,1 +CRC_3541,CRC_3541.svs,2 +CRC_3542,CRC_3542.svs,1 +CRC_3543,CRC_3543.svs,1 +CRC_3544,CRC_3544.svs,2 +CRC_3545,CRC_3545.svs,2 +CRC_3546,CRC_3546.svs,1 +CRC_3547,CRC_3547.svs,1 +CRC_3548,CRC_3548.svs,1 +CRC_3549,CRC_3549.svs,1 +CRC_3550,CRC_3550.svs,1 +CRC_3551,CRC_3551.svs,1 +CRC_3552,CRC_3552.svs,1 +CRC_3553,CRC_3553.svs,1 +CRC_3554,CRC_3554.svs,1 +CRC_3555,CRC_3555.svs,1 +CRC_3556,CRC_3556.svs,1 +CRC_3557,CRC_3557.svs,2 +CRC_3558,CRC_3558.svs,2 +CRC_3559,CRC_3559.svs,1 +CRC_3560,CRC_3560.svs,1 +CRC_3561,CRC_3561.svs,1 +CRC_3562,CRC_3562.svs,1 +CRC_3563,CRC_3563.svs,0 +CRC_3564,CRC_3564.svs,0 +CRC_3565,CRC_3565.svs,0 +CRC_3566,CRC_3566.svs,2 +CRC_3567,CRC_3567.svs,1 +CRC_3568,CRC_3568.svs,2 +CRC_3569,CRC_3569.svs,2 +CRC_3570,CRC_3570.svs,1 +CRC_3571,CRC_3571.svs,1 +CRC_3572,CRC_3572.svs,2 +CRC_3573,CRC_3573.svs,1 +CRC_3574,CRC_3574.svs,1 +CRC_3575,CRC_3575.svs,1 +CRC_3576,CRC_3576.svs,2 +CRC_3577,CRC_3577.svs,1 +CRC_3578,CRC_3578.svs,1 +CRC_3579,CRC_3579.svs,2 +CRC_3580,CRC_3580.svs,1 +CRC_3581,CRC_3581.svs,2 +CRC_3582,CRC_3582.svs,2 +CRC_3583,CRC_3583.svs,2 +CRC_3584,CRC_3584.svs,1 +CRC_3585,CRC_3585.svs,0 +CRC_3586,CRC_3586.svs,1 +CRC_3587,CRC_3587.svs,2 +CRC_3588,CRC_3588.svs,1 +CRC_3589,CRC_3589.svs,1 +CRC_3590,CRC_3590.svs,1 +CRC_3591,CRC_3591.svs,2 +CRC_3592,CRC_3592.svs,2 +CRC_3593,CRC_3593.svs,2 +CRC_3594,CRC_3594.svs,2 +CRC_3595,CRC_3595.svs,1 +CRC_3596,CRC_3596.svs,2 +CRC_3597,CRC_3597.svs,1 +CRC_3598,CRC_3598.svs,1 +CRC_3599,CRC_3599.svs,1 +CRC_3600,CRC_3600.svs,2 +CRC_3601,CRC_3601.svs,2 +CRC_3602,CRC_3602.svs,1 +CRC_3603,CRC_3603.svs,1 +CRC_3604,CRC_3604.svs,1 +CRC_3605,CRC_3605.svs,1 +CRC_3606,CRC_3606.svs,0 +CRC_3607,CRC_3607.svs,0 +CRC_3608,CRC_3608.svs,2 +CRC_3609,CRC_3609.svs,0 +CRC_3610,CRC_3610.svs,2 +CRC_3611,CRC_3611.svs,1 +CRC_3612,CRC_3612.svs,1 +CRC_3613,CRC_3613.svs,0 +CRC_3614,CRC_3614.svs,1 +CRC_3615,CRC_3615.svs,2 +CRC_3616,CRC_3616.svs,1 +CRC_3617,CRC_3617.svs,2 +CRC_3618,CRC_3618.svs,1 +CRC_3619,CRC_3619.svs,1 +CRC_3620,CRC_3620.svs,1 +CRC_3621,CRC_3621.svs,1 +CRC_3622,CRC_3622.svs,1 +CRC_3623,CRC_3623.svs,1 +CRC_3624,CRC_3624.svs,1 +CRC_3625,CRC_3625.svs,1 +CRC_3626,CRC_3626.svs,1 +CRC_3627,CRC_3627.svs,0 +CRC_3628,CRC_3628.svs,2 +CRC_3629,CRC_3629.svs,2 +CRC_3630,CRC_3630.svs,1 +CRC_3631,CRC_3631.svs,0 +CRC_3632,CRC_3632.svs,2 +CRC_3633,CRC_3633.svs,1 +CRC_3634,CRC_3634.svs,0 +CRC_3635,CRC_3635.svs,2 +CRC_3636,CRC_3636.svs,1 +CRC_3637,CRC_3637.svs,2 +CRC_3638,CRC_3638.svs,2 +CRC_3639,CRC_3639.svs,1 +CRC_3640,CRC_3640.svs,1 +CRC_3641,CRC_3641.svs,1 +CRC_3642,CRC_3642.svs,1 +CRC_3643,CRC_3643.svs,1 +CRC_3644,CRC_3644.svs,0 +CRC_3645,CRC_3645.svs,2 +CRC_3646,CRC_3646.svs,2 +CRC_3647,CRC_3647.svs,2 +CRC_3648,CRC_3648.svs,1 +CRC_3649,CRC_3649.svs,2 +CRC_3650,CRC_3650.svs,1 +CRC_3651,CRC_3651.svs,2 +CRC_3652,CRC_3652.svs,2 +CRC_3653,CRC_3653.svs,1 +CRC_3654,CRC_3654.svs,1 +CRC_3655,CRC_3655.svs,1 +CRC_3656,CRC_3656.svs,1 +CRC_3657,CRC_3657.svs,2 +CRC_3658,CRC_3658.svs,0 +CRC_3659,CRC_3659.svs,1 +CRC_3660,CRC_3660.svs,1 +CRC_3661,CRC_3661.svs,1 +CRC_3662,CRC_3662.svs,2 +CRC_3663,CRC_3663.svs,1 +CRC_3664,CRC_3664.svs,2 +CRC_3665,CRC_3665.svs,1 +CRC_3666,CRC_3666.svs,1 +CRC_3667,CRC_3667.svs,1 +CRC_3668,CRC_3668.svs,2 +CRC_3669,CRC_3669.svs,1 +CRC_3670,CRC_3670.svs,2 +CRC_3671,CRC_3671.svs,2 +CRC_3672,CRC_3672.svs,1 +CRC_3673,CRC_3673.svs,1 +CRC_3674,CRC_3674.svs,2 +CRC_3675,CRC_3675.svs,2 +CRC_3676,CRC_3676.svs,2 +CRC_3677,CRC_3677.svs,0 +CRC_3678,CRC_3678.svs,0 +CRC_3679,CRC_3679.svs,1 +CRC_3680,CRC_3680.svs,1 +CRC_3681,CRC_3681.svs,1 +CRC_3682,CRC_3682.svs,1 +CRC_3683,CRC_3683.svs,1 +CRC_3684,CRC_3684.svs,1 +CRC_3685,CRC_3685.svs,2 +CRC_3686,CRC_3686.svs,2 +CRC_3687,CRC_3687.svs,1 +CRC_3688,CRC_3688.svs,1 +CRC_3689,CRC_3689.svs,1 +CRC_3690,CRC_3690.svs,0 +CRC_3691,CRC_3691.svs,1 +CRC_3692,CRC_3692.svs,2 +CRC_3693,CRC_3693.svs,0 +CRC_3694,CRC_3694.svs,2 +CRC_3695,CRC_3695.svs,2 +CRC_3696,CRC_3696.svs,1 +CRC_3697,CRC_3697.svs,1 +CRC_3698,CRC_3698.svs,2 +CRC_3699,CRC_3699.svs,2 +CRC_3700,CRC_3700.svs,1 +CRC_3701,CRC_3701.svs,1 +CRC_3702,CRC_3702.svs,2 +CRC_3703,CRC_3703.svs,0 +CRC_3704,CRC_3704.svs,2 +CRC_3705,CRC_3705.svs,1 +CRC_3706,CRC_3706.svs,2 +CRC_3707,CRC_3707.svs,1 +CRC_3708,CRC_3708.svs,1 +CRC_3709,CRC_3709.svs,1 +CRC_3710,CRC_3710.svs,1 +CRC_3711,CRC_3711.svs,1 +CRC_3712,CRC_3712.svs,2 +CRC_3713,CRC_3713.svs,2 +CRC_3714,CRC_3714.svs,2 +CRC_3715,CRC_3715.svs,1 +CRC_3716,CRC_3716.svs,0 +CRC_3717,CRC_3717.svs,1 +CRC_3718,CRC_3718.svs,2 +CRC_3719,CRC_3719.svs,1 +CRC_3720,CRC_3720.svs,1 +CRC_3721,CRC_3721.svs,1 +CRC_3722,CRC_3722.svs,1 +CRC_3723,CRC_3723.svs,1 +CRC_3724,CRC_3724.svs,1 +CRC_3725,CRC_3725.svs,2 +CRC_3726,CRC_3726.svs,1 +CRC_3727,CRC_3727.svs,1 +CRC_3728,CRC_3728.svs,1 +CRC_3729,CRC_3729.svs,1 +CRC_3730,CRC_3730.svs,1 +CRC_3731,CRC_3731.svs,2 +CRC_3732,CRC_3732.svs,1 +CRC_3733,CRC_3733.svs,2 +CRC_3734,CRC_3734.svs,1 +CRC_3735,CRC_3735.svs,0 +CRC_3736,CRC_3736.svs,1 +CRC_3737,CRC_3737.svs,1 +CRC_3738,CRC_3738.svs,2 +CRC_3739,CRC_3739.svs,1 +CRC_3740,CRC_3740.svs,2 +CRC_3741,CRC_3741.svs,1 +CRC_3742,CRC_3742.svs,1 +CRC_3743,CRC_3743.svs,0 +CRC_3744,CRC_3744.svs,0 +CRC_3745,CRC_3745.svs,1 +CRC_3746,CRC_3746.svs,1 +CRC_3747,CRC_3747.svs,1 +CRC_3748,CRC_3748.svs,1 +CRC_3749,CRC_3749.svs,2 +CRC_3750,CRC_3750.svs,2 +CRC_3751,CRC_3751.svs,1 +CRC_3752,CRC_3752.svs,0 +CRC_3753,CRC_3753.svs,2 +CRC_3754,CRC_3754.svs,2 +CRC_3755,CRC_3755.svs,1 +CRC_3756,CRC_3756.svs,1 +CRC_3757,CRC_3757.svs,2 +CRC_3758,CRC_3758.svs,2 +CRC_3759,CRC_3759.svs,1 +CRC_3760,CRC_3760.svs,1 +CRC_3761,CRC_3761.svs,2 +CRC_3762,CRC_3762.svs,1 +CRC_3763,CRC_3763.svs,2 +CRC_3764,CRC_3764.svs,1 +CRC_3765,CRC_3765.svs,1 +CRC_3766,CRC_3766.svs,1 +CRC_3767,CRC_3767.svs,0 +CRC_3768,CRC_3768.svs,1 +CRC_3769,CRC_3769.svs,1 +CRC_3770,CRC_3770.svs,1 +CRC_3771,CRC_3771.svs,1 +CRC_3772,CRC_3772.svs,1 +CRC_3773,CRC_3773.svs,2 +CRC_3774,CRC_3774.svs,1 +CRC_3775,CRC_3775.svs,1 +CRC_3776,CRC_3776.svs,0 +CRC_3777,CRC_3777.svs,1 +CRC_3778,CRC_3778.svs,0 +CRC_3779,CRC_3779.svs,0 +CRC_3780,CRC_3780.svs,1 +CRC_3781,CRC_3781.svs,2 +CRC_3782,CRC_3782.svs,1 +CRC_3783,CRC_3783.svs,2 +CRC_3784,CRC_3784.svs,2 +CRC_3785,CRC_3785.svs,1 +CRC_3786,CRC_3786.svs,1 +CRC_3787,CRC_3787.svs,1 +CRC_3788,CRC_3788.svs,2 +CRC_3789,CRC_3789.svs,2 +CRC_3790,CRC_3790.svs,2 +CRC_3791,CRC_3791.svs,2 +CRC_3792,CRC_3792.svs,2 +CRC_3793,CRC_3793.svs,0 +CRC_3794,CRC_3794.svs,2 +CRC_3795,CRC_3795.svs,1 +CRC_3796,CRC_3796.svs,1 +CRC_3797,CRC_3797.svs,1 +CRC_3798,CRC_3798.svs,1 +CRC_3799,CRC_3799.svs,1 +CRC_3800,CRC_3800.svs,2 +CRC_3801,CRC_3801.svs,1 +CRC_3802,CRC_3802.svs,1 +CRC_3803,CRC_3803.svs,0 +CRC_3804,CRC_3804.svs,1 +CRC_3805,CRC_3805.svs,1 +CRC_3806,CRC_3806.svs,0 +CRC_3807,CRC_3807.svs,1 +CRC_3808,CRC_3808.svs,2 +CRC_3809,CRC_3809.svs,1 +CRC_3810,CRC_3810.svs,1 +CRC_3811,CRC_3811.svs,1 +CRC_3812,CRC_3812.svs,0 +CRC_3813,CRC_3813.svs,1 +CRC_3814,CRC_3814.svs,1 +CRC_3815,CRC_3815.svs,1 +CRC_3816,CRC_3816.svs,1 +CRC_3817,CRC_3817.svs,1 +CRC_3818,CRC_3818.svs,1 +CRC_3819,CRC_3819.svs,1 +CRC_3820,CRC_3820.svs,2 +CRC_3821,CRC_3821.svs,1 +CRC_3822,CRC_3822.svs,1 +CRC_3823,CRC_3823.svs,1 +CRC_3824,CRC_3824.svs,1 +CRC_3825,CRC_3825.svs,1 +CRC_3826,CRC_3826.svs,1 +CRC_3827,CRC_3827.svs,2 +CRC_3828,CRC_3828.svs,1 +CRC_3829,CRC_3829.svs,1 +CRC_3830,CRC_3830.svs,2 +CRC_3831,CRC_3831.svs,2 +CRC_3832,CRC_3832.svs,2 +CRC_3833,CRC_3833.svs,2 +CRC_3834,CRC_3834.svs,1 +CRC_3835,CRC_3835.svs,2 +CRC_3836,CRC_3836.svs,1 +CRC_3837,CRC_3837.svs,1 +CRC_3838,CRC_3838.svs,1 +CRC_3839,CRC_3839.svs,2 +CRC_3840,CRC_3840.svs,2 +CRC_3841,CRC_3841.svs,2 +CRC_3842,CRC_3842.svs,2 +CRC_3843,CRC_3843.svs,1 +CRC_3844,CRC_3844.svs,1 +CRC_3845,CRC_3845.svs,2 +CRC_3846,CRC_3846.svs,0 +CRC_3847,CRC_3847.svs,1 +CRC_3848,CRC_3848.svs,2 +CRC_3849,CRC_3849.svs,2 +CRC_3850,CRC_3850.svs,2 +CRC_3851,CRC_3851.svs,1 +CRC_3852,CRC_3852.svs,1 +CRC_3853,CRC_3853.svs,2 +CRC_3854,CRC_3854.svs,1 +CRC_3855,CRC_3855.svs,1 +CRC_3856,CRC_3856.svs,1 +CRC_3857,CRC_3857.svs,2 +CRC_3858,CRC_3858.svs,1 +CRC_3859,CRC_3859.svs,1 +CRC_3860,CRC_3860.svs,0 +CRC_3861,CRC_3861.svs,1 +CRC_3862,CRC_3862.svs,2 +CRC_3863,CRC_3863.svs,1 +CRC_3864,CRC_3864.svs,1 +CRC_3865,CRC_3865.svs,2 +CRC_3866,CRC_3866.svs,2 +CRC_3867,CRC_3867.svs,1 +CRC_3868,CRC_3868.svs,1 +CRC_3869,CRC_3869.svs,0 +CRC_3870,CRC_3870.svs,2 +CRC_3871,CRC_3871.svs,2 +CRC_3872,CRC_3872.svs,1 +CRC_3873,CRC_3873.svs,1 +CRC_3874,CRC_3874.svs,2 +CRC_3875,CRC_3875.svs,1 +CRC_3876,CRC_3876.svs,2 +CRC_3877,CRC_3877.svs,1 +CRC_3878,CRC_3878.svs,2 +CRC_3879,CRC_3879.svs,2 +CRC_3880,CRC_3880.svs,2 +CRC_3881,CRC_3881.svs,2 +CRC_3882,CRC_3882.svs,1 +CRC_3883,CRC_3883.svs,1 +CRC_3884,CRC_3884.svs,0 +CRC_3885,CRC_3885.svs,2 +CRC_3886,CRC_3886.svs,1 +CRC_3887,CRC_3887.svs,1 +CRC_3888,CRC_3888.svs,0 +CRC_3889,CRC_3889.svs,1 +CRC_3890,CRC_3890.svs,2 +CRC_3891,CRC_3891.svs,1 +CRC_3892,CRC_3892.svs,1 +CRC_3893,CRC_3893.svs,0 +CRC_3894,CRC_3894.svs,2 +CRC_3895,CRC_3895.svs,1 +CRC_3896,CRC_3896.svs,1 +CRC_3897,CRC_3897.svs,1 +CRC_3898,CRC_3898.svs,2 +CRC_3899,CRC_3899.svs,1 +CRC_3900,CRC_3900.svs,1 +CRC_3901,CRC_3901.svs,1 +CRC_3902,CRC_3902.svs,2 +CRC_3903,CRC_3903.svs,1 +CRC_3904,CRC_3904.svs,0 +CRC_3905,CRC_3905.svs,2 +CRC_3906,CRC_3906.svs,1 +CRC_3907,CRC_3907.svs,1 +CRC_3908,CRC_3908.svs,1 +CRC_3909,CRC_3909.svs,2 +CRC_3910,CRC_3910.svs,0 +CRC_3911,CRC_3911.svs,1 +CRC_3912,CRC_3912.svs,2 +CRC_3913,CRC_3913.svs,1 +CRC_3914,CRC_3914.svs,1 +CRC_3915,CRC_3915.svs,1 +CRC_3916,CRC_3916.svs,1 +CRC_3917,CRC_3917.svs,2 +CRC_3918,CRC_3918.svs,1 +CRC_3919,CRC_3919.svs,1 +CRC_3920,CRC_3920.svs,1 +CRC_3921,CRC_3921.svs,1 +CRC_3922,CRC_3922.svs,1 +CRC_3923,CRC_3923.svs,2 +CRC_3924,CRC_3924.svs,1 +CRC_3925,CRC_3925.svs,2 +CRC_3926,CRC_3926.svs,2 +CRC_3927,CRC_3927.svs,2 +CRC_3928,CRC_3928.svs,2 +CRC_3929,CRC_3929.svs,0 +CRC_3930,CRC_3930.svs,1 +CRC_3931,CRC_3931.svs,1 +CRC_3932,CRC_3932.svs,0 +CRC_3933,CRC_3933.svs,1 +CRC_3934,CRC_3934.svs,1 +CRC_3935,CRC_3935.svs,1 +CRC_3936,CRC_3936.svs,1 +CRC_3937,CRC_3937.svs,1 +CRC_3938,CRC_3938.svs,1 +CRC_3939,CRC_3939.svs,2 +CRC_3940,CRC_3940.svs,1 +CRC_3941,CRC_3941.svs,2 +CRC_3942,CRC_3942.svs,2 +CRC_3943,CRC_3943.svs,1 +CRC_3944,CRC_3944.svs,1 +CRC_3945,CRC_3945.svs,1 +CRC_3946,CRC_3946.svs,2 +CRC_3947,CRC_3947.svs,1 +CRC_3948,CRC_3948.svs,1 +CRC_3949,CRC_3949.svs,2 +CRC_3950,CRC_3950.svs,1 +CRC_3951,CRC_3951.svs,1 +CRC_3952,CRC_3952.svs,2 +CRC_3953,CRC_3953.svs,0 +CRC_3954,CRC_3954.svs,2 +CRC_3955,CRC_3955.svs,2 +CRC_3956,CRC_3956.svs,1 +CRC_3957,CRC_3957.svs,1 +CRC_3958,CRC_3958.svs,1 +CRC_3959,CRC_3959.svs,2 +CRC_3960,CRC_3960.svs,1 +CRC_3961,CRC_3961.svs,1 +CRC_3962,CRC_3962.svs,2 +CRC_3963,CRC_3963.svs,2 +CRC_3964,CRC_3964.svs,2 +CRC_3965,CRC_3965.svs,1 +CRC_3966,CRC_3966.svs,0 +CRC_3967,CRC_3967.svs,0 +CRC_3968,CRC_3968.svs,1 +CRC_3969,CRC_3969.svs,2 +CRC_3970,CRC_3970.svs,0 +CRC_3971,CRC_3971.svs,0 +CRC_3972,CRC_3972.svs,2 +CRC_3973,CRC_3973.svs,1 +CRC_3974,CRC_3974.svs,1 +CRC_3975,CRC_3975.svs,1 +CRC_3976,CRC_3976.svs,2 +CRC_3977,CRC_3977.svs,1 +CRC_3978,CRC_3978.svs,1 +CRC_3979,CRC_3979.svs,2 +CRC_3980,CRC_3980.svs,1 +CRC_3981,CRC_3981.svs,1 +CRC_3982,CRC_3982.svs,0 +CRC_3983,CRC_3983.svs,2 +CRC_3984,CRC_3984.svs,1 +CRC_3985,CRC_3985.svs,2 +CRC_3986,CRC_3986.svs,1 +CRC_3987,CRC_3987.svs,1 +CRC_3988,CRC_3988.svs,1 +CRC_3989,CRC_3989.svs,2 +CRC_3990,CRC_3990.svs,2 +CRC_3991,CRC_3991.svs,1 +CRC_3992,CRC_3992.svs,2 +CRC_3993,CRC_3993.svs,1 +CRC_3994,CRC_3994.svs,0 +CRC_3995,CRC_3995.svs,0 +CRC_3996,CRC_3996.svs,1 +CRC_3997,CRC_3997.svs,1 +CRC_3998,CRC_3998.svs,2 +CRC_3999,CRC_3999.svs,1 +CRC_4000,CRC_4000.svs,2 +CRC_4001,CRC_4001.svs,0 +CRC_4002,CRC_4002.svs,1 +CRC_4003,CRC_4003.svs,2 +CRC_4004,CRC_4004.svs,2 +CRC_4005,CRC_4005.svs,1 +CRC_4006,CRC_4006.svs,1 +CRC_4007,CRC_4007.svs,2 +CRC_4008,CRC_4008.svs,1 +CRC_4009,CRC_4009.svs,1 +CRC_4010,CRC_4010.svs,1 +CRC_4011,CRC_4011.svs,2 +CRC_4012,CRC_4012.svs,2 +CRC_4013,CRC_4013.svs,1 +CRC_4014,CRC_4014.svs,2 +CRC_4015,CRC_4015.svs,2 +CRC_4016,CRC_4016.svs,2 +CRC_4017,CRC_4017.svs,2 +CRC_4018,CRC_4018.svs,1 +CRC_4019,CRC_4019.svs,2 +CRC_4020,CRC_4020.svs,2 +CRC_4021,CRC_4021.svs,2 +CRC_4022,CRC_4022.svs,0 +CRC_4023,CRC_4023.svs,1 +CRC_4024,CRC_4024.svs,2 +CRC_4025,CRC_4025.svs,2 +CRC_4026,CRC_4026.svs,1 +CRC_4027,CRC_4027.svs,2 +CRC_4028,CRC_4028.svs,2 +CRC_4029,CRC_4029.svs,1 +CRC_4030,CRC_4030.svs,2 +CRC_4031,CRC_4031.svs,1 +CRC_4032,CRC_4032.svs,1 +CRC_4033,CRC_4033.svs,1 +CRC_4034,CRC_4034.svs,1 +CRC_4035,CRC_4035.svs,2 +CRC_4036,CRC_4036.svs,0 +CRC_4037,CRC_4037.svs,1 +CRC_4038,CRC_4038.svs,2 +CRC_4039,CRC_4039.svs,1 +CRC_4040,CRC_4040.svs,2 +CRC_4041,CRC_4041.svs,2 +CRC_4042,CRC_4042.svs,2 +CRC_4043,CRC_4043.svs,2 +CRC_4044,CRC_4044.svs,1 +CRC_4045,CRC_4045.svs,0 +CRC_4046,CRC_4046.svs,2 +CRC_4047,CRC_4047.svs,1 +CRC_4048,CRC_4048.svs,1 +CRC_4049,CRC_4049.svs,1 +CRC_4050,CRC_4050.svs,2 +CRC_4051,CRC_4051.svs,1 +CRC_4052,CRC_4052.svs,2 +CRC_4053,CRC_4053.svs,1 +CRC_4054,CRC_4054.svs,0 +CRC_4055,CRC_4055.svs,1 +CRC_4056,CRC_4056.svs,2 +CRC_4057,CRC_4057.svs,1 +CRC_4058,CRC_4058.svs,2 +CRC_4059,CRC_4059.svs,1 +CRC_4060,CRC_4060.svs,0 +CRC_4061,CRC_4061.svs,2 +CRC_4062,CRC_4062.svs,1 +CRC_4063,CRC_4063.svs,1 +CRC_4064,CRC_4064.svs,1 +CRC_4065,CRC_4065.svs,2 +CRC_4066,CRC_4066.svs,2 +CRC_4067,CRC_4067.svs,1 +CRC_4068,CRC_4068.svs,2 +CRC_4069,CRC_4069.svs,1 +CRC_4070,CRC_4070.svs,2 +CRC_4071,CRC_4071.svs,2 +CRC_4072,CRC_4072.svs,1 +CRC_4073,CRC_4073.svs,2 +CRC_4074,CRC_4074.svs,1 +CRC_4075,CRC_4075.svs,2 +CRC_4076,CRC_4076.svs,2 +CRC_4077,CRC_4077.svs,1 +CRC_4078,CRC_4078.svs,1 +CRC_4079,CRC_4079.svs,1 +CRC_4080,CRC_4080.svs,2 +CRC_4081,CRC_4081.svs,0 +CRC_4082,CRC_4082.svs,1 +CRC_4083,CRC_4083.svs,1 +CRC_4084,CRC_4084.svs,1 +CRC_4085,CRC_4085.svs,1 +CRC_4086,CRC_4086.svs,2 +CRC_4087,CRC_4087.svs,2 +CRC_4088,CRC_4088.svs,1 +CRC_4089,CRC_4089.svs,1 +CRC_4090,CRC_4090.svs,1 +CRC_4091,CRC_4091.svs,1 +CRC_4092,CRC_4092.svs,2 +CRC_4093,CRC_4093.svs,1 +CRC_4094,CRC_4094.svs,1 +CRC_4095,CRC_4095.svs,1 +CRC_4096,CRC_4096.svs,1 +CRC_4097,CRC_4097.svs,1 +CRC_4098,CRC_4098.svs,2 +CRC_4099,CRC_4099.svs,1 +CRC_4100,CRC_4100.svs,1 +CRC_4101,CRC_4101.svs,1 +CRC_4102,CRC_4102.svs,1 +CRC_4103,CRC_4103.svs,1 +CRC_4104,CRC_4104.svs,1 +CRC_4105,CRC_4105.svs,0 +CRC_4106,CRC_4106.svs,1 +CRC_4107,CRC_4107.svs,2 +CRC_4108,CRC_4108.svs,1 +CRC_4109,CRC_4109.svs,2 +CRC_4110,CRC_4110.svs,1 +CRC_4111,CRC_4111.svs,1 +CRC_4112,CRC_4112.svs,1 +CRC_4113,CRC_4113.svs,1 +CRC_4114,CRC_4114.svs,2 +CRC_4115,CRC_4115.svs,1 +CRC_4116,CRC_4116.svs,2 +CRC_4117,CRC_4117.svs,1 +CRC_4118,CRC_4118.svs,1 +CRC_4119,CRC_4119.svs,1 +CRC_4120,CRC_4120.svs,1 +CRC_4121,CRC_4121.svs,1 +CRC_4122,CRC_4122.svs,2 +CRC_4123,CRC_4123.svs,1 +CRC_4124,CRC_4124.svs,1 +CRC_4125,CRC_4125.svs,2 +CRC_4126,CRC_4126.svs,1 +CRC_4127,CRC_4127.svs,2 +CRC_4128,CRC_4128.svs,1 +CRC_4129,CRC_4129.svs,1 +CRC_4130,CRC_4130.svs,1 +CRC_4131,CRC_4131.svs,2 +CRC_4132,CRC_4132.svs,0 +CRC_4133,CRC_4133.svs,1 +CRC_4134,CRC_4134.svs,1 +CRC_4135,CRC_4135.svs,2 +CRC_4136,CRC_4136.svs,1 +CRC_4137,CRC_4137.svs,0 +CRC_4138,CRC_4138.svs,1 +CRC_4139,CRC_4139.svs,1 +CRC_4140,CRC_4140.svs,2 +CRC_4141,CRC_4141.svs,1 +CRC_4142,CRC_4142.svs,1 +CRC_4143,CRC_4143.svs,0 +CRC_4144,CRC_4144.svs,1 +CRC_4145,CRC_4145.svs,2 +CRC_4146,CRC_4146.svs,2 +CRC_4147,CRC_4147.svs,1 +CRC_4148,CRC_4148.svs,2 +CRC_4149,CRC_4149.svs,1 +CRC_4150,CRC_4150.svs,1 +CRC_4151,CRC_4151.svs,2 +CRC_4152,CRC_4152.svs,2 +CRC_4153,CRC_4153.svs,2 +CRC_4154,CRC_4154.svs,2 +CRC_4155,CRC_4155.svs,1 +CRC_4156,CRC_4156.svs,1 +CRC_4157,CRC_4157.svs,2 +CRC_4158,CRC_4158.svs,1 +CRC_4159,CRC_4159.svs,2 +CRC_4160,CRC_4160.svs,2 +CRC_4161,CRC_4161.svs,1 +CRC_4162,CRC_4162.svs,1 +CRC_4163,CRC_4163.svs,1 +CRC_4164,CRC_4164.svs,1 +CRC_4165,CRC_4165.svs,2 +CRC_4166,CRC_4166.svs,1 +CRC_4167,CRC_4167.svs,1 +CRC_4168,CRC_4168.svs,2 +CRC_4169,CRC_4169.svs,0 +CRC_4170,CRC_4170.svs,0 +CRC_4171,CRC_4171.svs,1 +CRC_4172,CRC_4172.svs,1 +CRC_4173,CRC_4173.svs,1 +CRC_4174,CRC_4174.svs,1 +CRC_4175,CRC_4175.svs,1 +CRC_4176,CRC_4176.svs,2 +CRC_4177,CRC_4177.svs,1 +CRC_4178,CRC_4178.svs,0 +CRC_4179,CRC_4179.svs,1 +CRC_4180,CRC_4180.svs,1 +CRC_4181,CRC_4181.svs,1 +CRC_4182,CRC_4182.svs,1 +CRC_4183,CRC_4183.svs,2 +CRC_4184,CRC_4184.svs,1 +CRC_4185,CRC_4185.svs,2 +CRC_4186,CRC_4186.svs,1 +CRC_4187,CRC_4187.svs,2 +CRC_4188,CRC_4188.svs,1 +CRC_4189,CRC_4189.svs,0 +CRC_4190,CRC_4190.svs,0 +CRC_4191,CRC_4191.svs,2 +CRC_4192,CRC_4192.svs,1 +CRC_4193,CRC_4193.svs,1 +CRC_4194,CRC_4194.svs,1 +CRC_4195,CRC_4195.svs,2 +CRC_4196,CRC_4196.svs,1 +CRC_4197,CRC_4197.svs,1 +CRC_4198,CRC_4198.svs,0 +CRC_4199,CRC_4199.svs,1 +CRC_4200,CRC_4200.svs,1 +CRC_4201,CRC_4201.svs,1 +CRC_4202,CRC_4202.svs,1 +CRC_4203,CRC_4203.svs,2 +CRC_4204,CRC_4204.svs,2 +CRC_4205,CRC_4205.svs,2 +CRC_4206,CRC_4206.svs,1 +CRC_4207,CRC_4207.svs,1 +CRC_4208,CRC_4208.svs,1 +CRC_4209,CRC_4209.svs,1 +CRC_4210,CRC_4210.svs,2 +CRC_4211,CRC_4211.svs,2 +CRC_4212,CRC_4212.svs,1 +CRC_4213,CRC_4213.svs,1 +CRC_4214,CRC_4214.svs,2 +CRC_4215,CRC_4215.svs,1 +CRC_4216,CRC_4216.svs,1 +CRC_4217,CRC_4217.svs,2 +CRC_4218,CRC_4218.svs,2 +CRC_4219,CRC_4219.svs,1 +CRC_4220,CRC_4220.svs,1 +CRC_4221,CRC_4221.svs,2 +CRC_4222,CRC_4222.svs,2 +CRC_4223,CRC_4223.svs,0 +CRC_4224,CRC_4224.svs,2 +CRC_4225,CRC_4225.svs,2 +CRC_4226,CRC_4226.svs,1 +CRC_4227,CRC_4227.svs,1 +CRC_4228,CRC_4228.svs,1 +CRC_4229,CRC_4229.svs,1 +CRC_4230,CRC_4230.svs,1 +CRC_4231,CRC_4231.svs,2 +CRC_4232,CRC_4232.svs,1 +CRC_4233,CRC_4233.svs,1 +CRC_4234,CRC_4234.svs,1 +CRC_4235,CRC_4235.svs,2 +CRC_4236,CRC_4236.svs,2 +CRC_4237,CRC_4237.svs,1 +CRC_4238,CRC_4238.svs,1 +CRC_4239,CRC_4239.svs,2 +CRC_4240,CRC_4240.svs,1 +CRC_4241,CRC_4241.svs,2 +CRC_4242,CRC_4242.svs,1 +CRC_4243,CRC_4243.svs,2 +CRC_4244,CRC_4244.svs,1 +CRC_4245,CRC_4245.svs,0 +CRC_4246,CRC_4246.svs,2 +CRC_4247,CRC_4247.svs,1 +CRC_4248,CRC_4248.svs,1 +CRC_4249,CRC_4249.svs,0 +CRC_4250,CRC_4250.svs,2 +CRC_4251,CRC_4251.svs,0 +CRC_4252,CRC_4252.svs,1 +CRC_4253,CRC_4253.svs,0 +CRC_4254,CRC_4254.svs,1 +CRC_4255,CRC_4255.svs,1 +CRC_4256,CRC_4256.svs,1 +CRC_4257,CRC_4257.svs,1 +CRC_4258,CRC_4258.svs,1 +CRC_4259,CRC_4259.svs,1 +CRC_4260,CRC_4260.svs,2 +CRC_4261,CRC_4261.svs,1 +CRC_4262,CRC_4262.svs,2 +CRC_4263,CRC_4263.svs,0 +CRC_4264,CRC_4264.svs,2 +CRC_4265,CRC_4265.svs,1 +CRC_4266,CRC_4266.svs,1 +CRC_4267,CRC_4267.svs,1 +CRC_4268,CRC_4268.svs,2 +CRC_4269,CRC_4269.svs,2 +CRC_4270,CRC_4270.svs,1 +CRC_4271,CRC_4271.svs,1 +CRC_4272,CRC_4272.svs,1 +CRC_4273,CRC_4273.svs,1 +CRC_4274,CRC_4274.svs,2 +CRC_4275,CRC_4275.svs,1 +CRC_4276,CRC_4276.svs,0 +CRC_4277,CRC_4277.svs,1 +CRC_4278,CRC_4278.svs,1 +CRC_4279,CRC_4279.svs,1 +CRC_4280,CRC_4280.svs,2 +CRC_4281,CRC_4281.svs,0 +CRC_4282,CRC_4282.svs,1 +CRC_4283,CRC_4283.svs,2 +CRC_4284,CRC_4284.svs,2 +CRC_4285,CRC_4285.svs,1 +CRC_4286,CRC_4286.svs,2 +CRC_4287,CRC_4287.svs,2 +CRC_4288,CRC_4288.svs,2 +CRC_4289,CRC_4289.svs,0 +CRC_4290,CRC_4290.svs,1 +CRC_4291,CRC_4291.svs,1 +CRC_4292,CRC_4292.svs,1 +CRC_4293,CRC_4293.svs,2 +CRC_4294,CRC_4294.svs,1 +CRC_4295,CRC_4295.svs,1 +CRC_4296,CRC_4296.svs,1 +CRC_4297,CRC_4297.svs,1 +CRC_4298,CRC_4298.svs,1 +CRC_4299,CRC_4299.svs,0 +CRC_4300,CRC_4300.svs,2 +CRC_4301,CRC_4301.svs,1 +CRC_4302,CRC_4302.svs,2 +CRC_4303,CRC_4303.svs,2 +CRC_4304,CRC_4304.svs,1 +CRC_4305,CRC_4305.svs,1 +CRC_4306,CRC_4306.svs,0 +CRC_4307,CRC_4307.svs,1 +CRC_4308,CRC_4308.svs,2 +CRC_4309,CRC_4309.svs,1 +CRC_4310,CRC_4310.svs,1 +CRC_4311,CRC_4311.svs,2 +CRC_4312,CRC_4312.svs,1 +CRC_4313,CRC_4313.svs,1 +CRC_4314,CRC_4314.svs,1 +CRC_4315,CRC_4315.svs,2 +CRC_4316,CRC_4316.svs,1 +CRC_4317,CRC_4317.svs,1 +CRC_4318,CRC_4318.svs,0 +CRC_4319,CRC_4319.svs,1 +CRC_4320,CRC_4320.svs,1 +CRC_4321,CRC_4321.svs,1 +CRC_4322,CRC_4322.svs,1 +CRC_4323,CRC_4323.svs,2 +CRC_4324,CRC_4324.svs,1 +CRC_4325,CRC_4325.svs,1 +CRC_4326,CRC_4326.svs,2 +CRC_4327,CRC_4327.svs,1 +CRC_4328,CRC_4328.svs,1 +CRC_4329,CRC_4329.svs,1 +CRC_4330,CRC_4330.svs,1 +CRC_4331,CRC_4331.svs,1 +CRC_4332,CRC_4332.svs,2 +CRC_4333,CRC_4333.svs,1 +CRC_4334,CRC_4334.svs,0 +CRC_4335,CRC_4335.svs,2 +CRC_4336,CRC_4336.svs,2 +CRC_4337,CRC_4337.svs,1 +CRC_4338,CRC_4338.svs,0 +CRC_4339,CRC_4339.svs,1 +CRC_4340,CRC_4340.svs,0 +CRC_4341,CRC_4341.svs,2 +CRC_4342,CRC_4342.svs,1 +CRC_4343,CRC_4343.svs,1 +CRC_4344,CRC_4344.svs,1 +CRC_4345,CRC_4345.svs,1 +CRC_4346,CRC_4346.svs,1 +CRC_4347,CRC_4347.svs,2 +CRC_4348,CRC_4348.svs,1 +CRC_4349,CRC_4349.svs,1 +CRC_4350,CRC_4350.svs,1 +CRC_4351,CRC_4351.svs,0 +CRC_4352,CRC_4352.svs,2 +CRC_4353,CRC_4353.svs,1 +CRC_4354,CRC_4354.svs,1 +CRC_4355,CRC_4355.svs,1 +CRC_4356,CRC_4356.svs,2 +CRC_4357,CRC_4357.svs,1 +CRC_4358,CRC_4358.svs,1 +CRC_4359,CRC_4359.svs,2 +CRC_4360,CRC_4360.svs,1 +CRC_4361,CRC_4361.svs,2 +CRC_4362,CRC_4362.svs,1 +CRC_4363,CRC_4363.svs,1 +CRC_4364,CRC_4364.svs,2 +CRC_4365,CRC_4365.svs,1 +CRC_4366,CRC_4366.svs,1 +CRC_4367,CRC_4367.svs,0 +CRC_4368,CRC_4368.svs,1 +CRC_4369,CRC_4369.svs,1 +CRC_4370,CRC_4370.svs,1 +CRC_4371,CRC_4371.svs,0 +CRC_4372,CRC_4372.svs,1 +CRC_4373,CRC_4373.svs,1 +CRC_4374,CRC_4374.svs,2 +CRC_4375,CRC_4375.svs,0 +CRC_4376,CRC_4376.svs,2 +CRC_4377,CRC_4377.svs,1 +CRC_4378,CRC_4378.svs,1 +CRC_4379,CRC_4379.svs,1 +CRC_4380,CRC_4380.svs,1 +CRC_4381,CRC_4381.svs,1 +CRC_4382,CRC_4382.svs,2 +CRC_4383,CRC_4383.svs,2 +CRC_4384,CRC_4384.svs,2 +CRC_4385,CRC_4385.svs,1 +CRC_4386,CRC_4386.svs,1 +CRC_4387,CRC_4387.svs,1 +CRC_4388,CRC_4388.svs,2 +CRC_4389,CRC_4389.svs,1 +CRC_4390,CRC_4390.svs,1 +CRC_4391,CRC_4391.svs,1 +CRC_4392,CRC_4392.svs,1 +CRC_4393,CRC_4393.svs,2 +CRC_4394,CRC_4394.svs,0 +CRC_4395,CRC_4395.svs,2 +CRC_4396,CRC_4396.svs,1 +CRC_4397,CRC_4397.svs,1 +CRC_4398,CRC_4398.svs,1 +CRC_4399,CRC_4399.svs,2 +CRC_4400,CRC_4400.svs,1 +CRC_4401,CRC_4401.svs,1 +CRC_4402,CRC_4402.svs,0 +CRC_4403,CRC_4403.svs,2 +CRC_4404,CRC_4404.svs,1 +CRC_4405,CRC_4405.svs,1 +CRC_4406,CRC_4406.svs,2 +CRC_4407,CRC_4407.svs,2 +CRC_4408,CRC_4408.svs,1 +CRC_4409,CRC_4409.svs,1 +CRC_4410,CRC_4410.svs,2 +CRC_4411,CRC_4411.svs,0 +CRC_4412,CRC_4412.svs,1 +CRC_4413,CRC_4413.svs,2 +CRC_4414,CRC_4414.svs,1 +CRC_4415,CRC_4415.svs,1 +CRC_4416,CRC_4416.svs,2 +CRC_4417,CRC_4417.svs,2 +CRC_4418,CRC_4418.svs,2 +CRC_4419,CRC_4419.svs,1 +CRC_4420,CRC_4420.svs,2 +CRC_4421,CRC_4421.svs,2 +CRC_4422,CRC_4422.svs,2 +CRC_4423,CRC_4423.svs,1 +CRC_4424,CRC_4424.svs,2 +CRC_4425,CRC_4425.svs,2 +CRC_4426,CRC_4426.svs,1 +CRC_4427,CRC_4427.svs,0 +CRC_4428,CRC_4428.svs,1 +CRC_4429,CRC_4429.svs,1 +CRC_4430,CRC_4430.svs,2 +CRC_4431,CRC_4431.svs,0 +CRC_4432,CRC_4432.svs,2 +CRC_test_000,CRC_test_000.svs,0 +CRC_test_001,CRC_test_001.svs,1 +CRC_test_002,CRC_test_002.svs,1 +CRC_test_003,CRC_test_003.svs,1 +CRC_test_004,CRC_test_004.svs,2 +CRC_test_005,CRC_test_005.svs,0 +CRC_test_006,CRC_test_006.svs,0 +CRC_test_007,CRC_test_007.svs,1 +CRC_test_008,CRC_test_008.svs,1 +CRC_test_009,CRC_test_009.svs,1 +CRC_test_010,CRC_test_010.svs,0 +CRC_test_011,CRC_test_011.svs,1 +CRC_test_012,CRC_test_012.svs,1 +CRC_test_013,CRC_test_013.svs,1 +CRC_test_014,CRC_test_014.svs,1 +CRC_test_015,CRC_test_015.svs,1 +CRC_test_016,CRC_test_016.svs,0 +CRC_test_017,CRC_test_017.svs,2 +CRC_test_018,CRC_test_018.svs,1 +CRC_test_019,CRC_test_019.svs,2 +CRC_test_020,CRC_test_020.svs,1 +CRC_test_021,CRC_test_021.svs,1 +CRC_test_022,CRC_test_022.svs,1 +CRC_test_023,CRC_test_023.svs,2 +CRC_test_024,CRC_test_024.svs,2 +CRC_test_025,CRC_test_025.svs,0 +CRC_test_026,CRC_test_026.svs,2 +CRC_test_027,CRC_test_027.svs,1 +CRC_test_028,CRC_test_028.svs,1 +CRC_test_029,CRC_test_029.svs,1 +CRC_test_030,CRC_test_030.svs,0 +CRC_test_031,CRC_test_031.svs,2 +CRC_test_032,CRC_test_032.svs,2 +CRC_test_033,CRC_test_033.svs,0 +CRC_test_034,CRC_test_034.svs,1 +CRC_test_035,CRC_test_035.svs,2 +CRC_test_036,CRC_test_036.svs,1 +CRC_test_037,CRC_test_037.svs,2 +CRC_test_038,CRC_test_038.svs,1 +CRC_test_039,CRC_test_039.svs,1 +CRC_test_040,CRC_test_040.svs,1 +CRC_test_041,CRC_test_041.svs,0 +CRC_test_042,CRC_test_042.svs,2 +CRC_test_043,CRC_test_043.svs,0 +CRC_test_044,CRC_test_044.svs,2 +CRC_test_045,CRC_test_045.svs,0 +CRC_test_046,CRC_test_046.svs,0 +CRC_test_047,CRC_test_047.svs,1 +CRC_test_048,CRC_test_048.svs,0 +CRC_test_049,CRC_test_049.svs,0 +CRC_test_050,CRC_test_050.svs,2 +CRC_test_051,CRC_test_051.svs,0 +CRC_test_052,CRC_test_052.svs,1 +CRC_test_053,CRC_test_053.svs,1 +CRC_test_054,CRC_test_054.svs,1 +CRC_test_055,CRC_test_055.svs,0 +CRC_test_056,CRC_test_056.svs,1 +CRC_test_057,CRC_test_057.svs,1 +CRC_test_058,CRC_test_058.svs,1 +CRC_test_059,CRC_test_059.svs,1 +CRC_test_060,CRC_test_060.svs,1 +CRC_test_061,CRC_test_061.svs,1 +CRC_test_062,CRC_test_062.svs,0 +CRC_test_063,CRC_test_063.svs,1 +CRC_test_064,CRC_test_064.svs,2 +CRC_test_065,CRC_test_065.svs,1 +CRC_test_066,CRC_test_066.svs,2 +CRC_test_067,CRC_test_067.svs,1 +CRC_test_068,CRC_test_068.svs,2 +CRC_test_069,CRC_test_069.svs,2 +CRC_test_070,CRC_test_070.svs,1 +CRC_test_071,CRC_test_071.svs,1 +CRC_test_072,CRC_test_072.svs,0 +CRC_test_073,CRC_test_073.svs,2 +CRC_test_074,CRC_test_074.svs,2 +CRC_test_075,CRC_test_075.svs,1 +CRC_test_076,CRC_test_076.svs,0 +CRC_test_077,CRC_test_077.svs,1 +CRC_test_078,CRC_test_078.svs,1 +CRC_test_079,CRC_test_079.svs,0 +CRC_test_080,CRC_test_080.svs,0 +CRC_test_081,CRC_test_081.svs,1 +CRC_test_082,CRC_test_082.svs,1 +CRC_test_083,CRC_test_083.svs,0 +CRC_test_084,CRC_test_084.svs,1 +CRC_test_085,CRC_test_085.svs,1 +CRC_test_086,CRC_test_086.svs,2 +CRC_test_087,CRC_test_087.svs,0 +CRC_test_088,CRC_test_088.svs,1 +CRC_test_089,CRC_test_089.svs,2 +CRC_test_090,CRC_test_090.svs,1 +CRC_test_091,CRC_test_091.svs,0 +CRC_test_092,CRC_test_092.svs,1 +CRC_test_093,CRC_test_093.svs,1 +CRC_test_094,CRC_test_094.svs,0 +CRC_test_095,CRC_test_095.svs,0 +CRC_test_096,CRC_test_096.svs,0 +CRC_test_097,CRC_test_097.svs,0 +CRC_test_098,CRC_test_098.svs,1 +CRC_test_099,CRC_test_099.svs,1 +CRC_test_100,CRC_test_100.svs,0 +CRC_test_101,CRC_test_101.svs,1 +CRC_test_102,CRC_test_102.svs,1 +CRC_test_103,CRC_test_103.svs,1 +CRC_test_104,CRC_test_104.svs,1 +CRC_test_105,CRC_test_105.svs,1 +CRC_test_106,CRC_test_106.svs,1 +CRC_test_107,CRC_test_107.svs,1 +CRC_test_108,CRC_test_108.svs,1 +CRC_test_109,CRC_test_109.svs,2 +CRC_test_110,CRC_test_110.svs,2 +CRC_test_111,CRC_test_111.svs,2 +CRC_test_112,CRC_test_112.svs,0 +CRC_test_113,CRC_test_113.svs,0 +CRC_test_114,CRC_test_114.svs,0 +CRC_test_115,CRC_test_115.svs,0 +CRC_test_116,CRC_test_116.svs,1 +CRC_test_117,CRC_test_117.svs,2 +CRC_test_118,CRC_test_118.svs,1 +CRC_test_119,CRC_test_119.svs,0 +CRC_test_120,CRC_test_120.svs,2 +CRC_test_121,CRC_test_121.svs,1 +CRC_test_122,CRC_test_122.svs,1 +CRC_test_123,CRC_test_123.svs,0 +CRC_test_124,CRC_test_124.svs,0 +CRC_test_125,CRC_test_125.svs,2 +CRC_test_126,CRC_test_126.svs,2 +CRC_test_127,CRC_test_127.svs,1 +CRC_test_128,CRC_test_128.svs,2 +CRC_test_129,CRC_test_129.svs,2 +CRC_test_130,CRC_test_130.svs,2 +CRC_test_131,CRC_test_131.svs,1 +CRC_test_132,CRC_test_132.svs,2 +CRC_test_133,CRC_test_133.svs,2 +CRC_test_134,CRC_test_134.svs,0 +CRC_test_135,CRC_test_135.svs,1 +CRC_test_136,CRC_test_136.svs,2 +CRC_test_137,CRC_test_137.svs,1 +CRC_test_138,CRC_test_138.svs,0 +CRC_test_139,CRC_test_139.svs,1 +CRC_test_140,CRC_test_140.svs,2 +CRC_test_141,CRC_test_141.svs,1 +CRC_test_142,CRC_test_142.svs,0 +CRC_test_143,CRC_test_143.svs,0 +CRC_test_144,CRC_test_144.svs,2 +CRC_test_145,CRC_test_145.svs,1 +CRC_test_146,CRC_test_146.svs,2 +CRC_test_147,CRC_test_147.svs,1 +CRC_test_148,CRC_test_148.svs,0 +CRC_test_149,CRC_test_149.svs,1 +CRC_test_150,CRC_test_150.svs,2 +CRC_test_151,CRC_test_151.svs,2 +CRC_test_152,CRC_test_152.svs,1 +CRC_test_153,CRC_test_153.svs,1 +CRC_test_154,CRC_test_154.svs,1 +CRC_test_155,CRC_test_155.svs,1 +CRC_test_156,CRC_test_156.svs,1 +CRC_test_157,CRC_test_157.svs,1 +CRC_test_158,CRC_test_158.svs,1 +CRC_test_159,CRC_test_159.svs,1 +CRC_test_160,CRC_test_160.svs,2 +CRC_test_161,CRC_test_161.svs,1 +CRC_test_162,CRC_test_162.svs,2 +CRC_test_163,CRC_test_163.svs,1 +CRC_test_164,CRC_test_164.svs,1 +CRC_test_165,CRC_test_165.svs,0 +CRC_test_166,CRC_test_166.svs,1 +CRC_test_167,CRC_test_167.svs,1 +CRC_test_168,CRC_test_168.svs,0 +CRC_test_169,CRC_test_169.svs,1 +CRC_test_170,CRC_test_170.svs,1 +CRC_test_171,CRC_test_171.svs,2 +CRC_test_172,CRC_test_172.svs,1 +CRC_test_173,CRC_test_173.svs,0 +CRC_test_174,CRC_test_174.svs,1 +CRC_test_175,CRC_test_175.svs,1 +CRC_test_176,CRC_test_176.svs,2 +CRC_test_177,CRC_test_177.svs,1 +CRC_test_178,CRC_test_178.svs,2 +CRC_test_179,CRC_test_179.svs,1 +CRC_test_180,CRC_test_180.svs,1 +CRC_test_181,CRC_test_181.svs,0 +CRC_test_182,CRC_test_182.svs,1 +CRC_test_183,CRC_test_183.svs,0 +CRC_test_184,CRC_test_184.svs,1 +CRC_test_185,CRC_test_185.svs,1 +CRC_test_186,CRC_test_186.svs,2 +CRC_test_187,CRC_test_187.svs,1 +CRC_test_188,CRC_test_188.svs,2 +CRC_test_189,CRC_test_189.svs,0 +CRC_test_190,CRC_test_190.svs,2 +CRC_test_191,CRC_test_191.svs,0 +CRC_test_192,CRC_test_192.svs,1 +CRC_test_193,CRC_test_193.svs,1 +CRC_test_194,CRC_test_194.svs,1 +CRC_test_195,CRC_test_195.svs,1 +CRC_test_196,CRC_test_196.svs,0 +CRC_test_197,CRC_test_197.svs,2 +CRC_test_198,CRC_test_198.svs,1 +CRC_test_199,CRC_test_199.svs,1 +CRC_test_200,CRC_test_200.svs,2 +CRC_test_201,CRC_test_201.svs,1 +CRC_test_202,CRC_test_202.svs,0 +CRC_test_203,CRC_test_203.svs,1 +CRC_test_204,CRC_test_204.svs,1 +CRC_test_205,CRC_test_205.svs,2 +CRC_test_206,CRC_test_206.svs,1 +CRC_test_207,CRC_test_207.svs,1 +CRC_test_208,CRC_test_208.svs,2 +CRC_test_209,CRC_test_209.svs,1 +CRC_test_210,CRC_test_210.svs,1 +CRC_test_211,CRC_test_211.svs,2 +CRC_test_212,CRC_test_212.svs,1 +CRC_test_213,CRC_test_213.svs,2 +CRC_test_214,CRC_test_214.svs,1 +CRC_test_215,CRC_test_215.svs,1 +CRC_test_216,CRC_test_216.svs,0 +CRC_test_217,CRC_test_217.svs,1 +CRC_test_218,CRC_test_218.svs,1 +CRC_test_219,CRC_test_219.svs,1 +CRC_test_220,CRC_test_220.svs,2 +CRC_test_221,CRC_test_221.svs,1 +CRC_test_222,CRC_test_222.svs,0 +CRC_test_223,CRC_test_223.svs,2 +CRC_test_224,CRC_test_224.svs,2 +CRC_test_225,CRC_test_225.svs,2 +CRC_test_226,CRC_test_226.svs,0 +CRC_test_227,CRC_test_227.svs,1 +CRC_test_228,CRC_test_228.svs,1 +CRC_test_229,CRC_test_229.svs,0 +CRC_test_230,CRC_test_230.svs,2 +CRC_test_231,CRC_test_231.svs,1 +CRC_test_232,CRC_test_232.svs,1 +CRC_test_233,CRC_test_233.svs,1 +CRC_test_234,CRC_test_234.svs,1 +CRC_test_235,CRC_test_235.svs,1 +CRC_test_236,CRC_test_236.svs,2 +CRC_test_237,CRC_test_237.svs,1 +CRC_test_238,CRC_test_238.svs,1 +CRC_test_239,CRC_test_239.svs,1 +CRC_test_240,CRC_test_240.svs,2 +CRC_test_241,CRC_test_241.svs,0 +CRC_test_242,CRC_test_242.svs,2 +CRC_test_243,CRC_test_243.svs,2 +CRC_test_244,CRC_test_244.svs,2 +CRC_test_245,CRC_test_245.svs,1 +CRC_test_246,CRC_test_246.svs,2 +CRC_test_247,CRC_test_247.svs,1 +CRC_test_248,CRC_test_248.svs,1 +CRC_test_249,CRC_test_249.svs,2 +CRC_test_250,CRC_test_250.svs,2 +CRC_test_251,CRC_test_251.svs,2 +CRC_test_252,CRC_test_252.svs,1 +CRC_test_253,CRC_test_253.svs,1 +CRC_test_254,CRC_test_254.svs,1 +CRC_test_255,CRC_test_255.svs,1 +CRC_test_256,CRC_test_256.svs,1 +CRC_test_257,CRC_test_257.svs,1 +CRC_test_258,CRC_test_258.svs,0 +CRC_test_259,CRC_test_259.svs,2 +CRC_test_260,CRC_test_260.svs,2 +CRC_test_261,CRC_test_261.svs,2 +CRC_test_262,CRC_test_262.svs,1 +CRC_test_263,CRC_test_263.svs,2 +CRC_test_264,CRC_test_264.svs,2 +CRC_test_265,CRC_test_265.svs,0 +CRC_test_266,CRC_test_266.svs,0 +CRC_test_267,CRC_test_267.svs,0 +CRC_test_268,CRC_test_268.svs,2 +CRC_test_269,CRC_test_269.svs,1 +CRC_test_270,CRC_test_270.svs,1 +CRC_test_271,CRC_test_271.svs,1 +CRC_test_272,CRC_test_272.svs,0 +CRC_test_273,CRC_test_273.svs,1 +CRC_test_274,CRC_test_274.svs,2 +CRC_test_275,CRC_test_275.svs,1 +CRC_test_276,CRC_test_276.svs,1 +CRC_test_277,CRC_test_277.svs,1 +CRC_test_278,CRC_test_278.svs,2 +CRC_test_279,CRC_test_279.svs,0 +CRC_test_280,CRC_test_280.svs,1 +CRC_test_281,CRC_test_281.svs,1 +CRC_test_282,CRC_test_282.svs,1 +CRC_test_283,CRC_test_283.svs,0 +CRC_test_284,CRC_test_284.svs,1 +CRC_test_285,CRC_test_285.svs,1 +CRC_test_286,CRC_test_286.svs,1 +CRC_test_287,CRC_test_287.svs,1 +CRC_test_288,CRC_test_288.svs,1 +CRC_test_289,CRC_test_289.svs,2 +CRC_test_290,CRC_test_290.svs,2 +CRC_test_291,CRC_test_291.svs,2 +CRC_test_292,CRC_test_292.svs,0 +CRC_test_293,CRC_test_293.svs,2 +CRC_test_294,CRC_test_294.svs,2 +CRC_test_295,CRC_test_295.svs,1 +CRC_test_296,CRC_test_296.svs,2 +CRC_test_297,CRC_test_297.svs,0 +CRC_test_298,CRC_test_298.svs,0 +CRC_test_299,CRC_test_299.svs,2 +CRC_test_300,CRC_test_300.svs,0 +CRC_test_301,CRC_test_301.svs,1 +CRC_test_302,CRC_test_302.svs,1 +CRC_test_303,CRC_test_303.svs,1 +CRC_test_304,CRC_test_304.svs,1 +CRC_test_305,CRC_test_305.svs,0 +CRC_test_306,CRC_test_306.svs,2 +CRC_test_307,CRC_test_307.svs,1 +CRC_test_308,CRC_test_308.svs,2 +CRC_test_309,CRC_test_309.svs,1 +CRC_test_310,CRC_test_310.svs,2 +CRC_test_311,CRC_test_311.svs,2 +CRC_test_312,CRC_test_312.svs,1 +CRC_test_313,CRC_test_313.svs,1 +CRC_test_314,CRC_test_314.svs,1 +CRC_test_315,CRC_test_315.svs,1 +CRC_test_316,CRC_test_316.svs,1 +CRC_test_317,CRC_test_317.svs,0 +CRC_test_318,CRC_test_318.svs,0 +CRC_test_319,CRC_test_319.svs,2 +CRC_test_320,CRC_test_320.svs,1 +CRC_test_321,CRC_test_321.svs,0 +CRC_test_322,CRC_test_322.svs,1 +CRC_test_323,CRC_test_323.svs,0 +CRC_test_324,CRC_test_324.svs,2 +CRC_test_325,CRC_test_325.svs,1 +CRC_test_326,CRC_test_326.svs,0 +CRC_test_327,CRC_test_327.svs,2 +CRC_test_328,CRC_test_328.svs,2 +CRC_test_329,CRC_test_329.svs,2 +CRC_test_330,CRC_test_330.svs,2 +CRC_test_331,CRC_test_331.svs,1 +CRC_test_332,CRC_test_332.svs,2 +CRC_test_333,CRC_test_333.svs,1 +CRC_test_334,CRC_test_334.svs,2 +CRC_test_335,CRC_test_335.svs,1 +CRC_test_336,CRC_test_336.svs,0 +CRC_test_337,CRC_test_337.svs,2 +CRC_test_338,CRC_test_338.svs,1 +CRC_test_339,CRC_test_339.svs,2 +CRC_test_340,CRC_test_340.svs,1 +CRC_test_341,CRC_test_341.svs,1 +CRC_test_342,CRC_test_342.svs,1 +CRC_test_343,CRC_test_343.svs,0 +CRC_test_344,CRC_test_344.svs,2 +CRC_test_345,CRC_test_345.svs,2 +CRC_test_346,CRC_test_346.svs,1 +CRC_test_347,CRC_test_347.svs,2 +CRC_test_348,CRC_test_348.svs,1 +CRC_test_349,CRC_test_349.svs,2 +CRC_test_350,CRC_test_350.svs,1 +CRC_test_351,CRC_test_351.svs,0 +CRC_test_352,CRC_test_352.svs,2 +CRC_test_353,CRC_test_353.svs,1 +CRC_test_354,CRC_test_354.svs,2 +CRC_test_355,CRC_test_355.svs,1 +CRC_test_356,CRC_test_356.svs,1 +CRC_test_357,CRC_test_357.svs,1 +CRC_test_358,CRC_test_358.svs,2 +CRC_test_359,CRC_test_359.svs,2 +CRC_test_360,CRC_test_360.svs,1 +CRC_test_361,CRC_test_361.svs,1 +CRC_test_362,CRC_test_362.svs,1 +CRC_test_363,CRC_test_363.svs,0 +CRC_test_364,CRC_test_364.svs,2 +CRC_test_365,CRC_test_365.svs,1 +CRC_test_366,CRC_test_366.svs,0 +CRC_test_367,CRC_test_367.svs,0 +CRC_test_368,CRC_test_368.svs,1 +CRC_test_369,CRC_test_369.svs,1 +CRC_test_370,CRC_test_370.svs,0 +CRC_test_371,CRC_test_371.svs,2 +CRC_test_372,CRC_test_372.svs,1 +CRC_test_373,CRC_test_373.svs,1 +CRC_test_374,CRC_test_374.svs,0 +CRC_test_375,CRC_test_375.svs,2 +CRC_test_376,CRC_test_376.svs,2 +CRC_test_377,CRC_test_377.svs,1 +CRC_test_378,CRC_test_378.svs,1 +CRC_test_379,CRC_test_379.svs,2 +CRC_test_380,CRC_test_380.svs,2 +CRC_test_381,CRC_test_381.svs,1 +CRC_test_382,CRC_test_382.svs,2 +CRC_test_383,CRC_test_383.svs,0 +CRC_test_384,CRC_test_384.svs,1 +CRC_test_385,CRC_test_385.svs,2 +CRC_test_386,CRC_test_386.svs,2 +CRC_test_387,CRC_test_387.svs,0 +CRC_test_388,CRC_test_388.svs,1 +CRC_test_389,CRC_test_389.svs,2 +CRC_test_390,CRC_test_390.svs,0 +CRC_test_391,CRC_test_391.svs,1 +CRC_test_392,CRC_test_392.svs,1 +CRC_test_393,CRC_test_393.svs,0 +CRC_test_394,CRC_test_394.svs,2 +CRC_test_395,CRC_test_395.svs,1 +CRC_test_396,CRC_test_396.svs,1 +CRC_test_397,CRC_test_397.svs,2 +CRC_test_398,CRC_test_398.svs,2 +CRC_test_399,CRC_test_399.svs,1 +CRC_test_400,CRC_test_400.svs,1 +CRC_test_401,CRC_test_401.svs,2 +CRC_test_402,CRC_test_402.svs,1 +CRC_test_403,CRC_test_403.svs,2 +CRC_test_404,CRC_test_404.svs,2 +CRC_test_405,CRC_test_405.svs,0 +CRC_test_406,CRC_test_406.svs,1 +CRC_test_407,CRC_test_407.svs,2 +CRC_test_408,CRC_test_408.svs,1 +CRC_test_409,CRC_test_409.svs,2 +CRC_test_410,CRC_test_410.svs,1 +CRC_test_411,CRC_test_411.svs,1 +CRC_test_412,CRC_test_412.svs,1 +CRC_test_413,CRC_test_413.svs,0 +CRC_test_414,CRC_test_414.svs,1 +CRC_test_415,CRC_test_415.svs,1 +CRC_test_416,CRC_test_416.svs,1 +CRC_test_417,CRC_test_417.svs,1 +CRC_test_418,CRC_test_418.svs,1 +CRC_test_419,CRC_test_419.svs,1 +CRC_test_420,CRC_test_420.svs,2 +CRC_test_421,CRC_test_421.svs,1 +CRC_test_422,CRC_test_422.svs,1 +CRC_test_423,CRC_test_423.svs,1 +CRC_test_424,CRC_test_424.svs,1 +CRC_test_425,CRC_test_425.svs,1 +CRC_test_426,CRC_test_426.svs,0 +CRC_test_427,CRC_test_427.svs,0 +CRC_test_428,CRC_test_428.svs,2 +CRC_test_429,CRC_test_429.svs,1 +CRC_test_430,CRC_test_430.svs,0 +CRC_test_431,CRC_test_431.svs,0 +CRC_test_432,CRC_test_432.svs,1 +CRC_test_433,CRC_test_433.svs,2 +CRC_test_434,CRC_test_434.svs,0 +CRC_test_435,CRC_test_435.svs,2 +CRC_test_436,CRC_test_436.svs,1 +CRC_test_437,CRC_test_437.svs,1 +CRC_test_438,CRC_test_438.svs,1 +CRC_test_439,CRC_test_439.svs,1 +CRC_test_440,CRC_test_440.svs,2 +CRC_test_441,CRC_test_441.svs,2 +CRC_test_442,CRC_test_442.svs,2 +CRC_test_443,CRC_test_443.svs,2 +CRC_test_444,CRC_test_444.svs,1 +CRC_test_445,CRC_test_445.svs,2 +CRC_test_446,CRC_test_446.svs,1 +CRC_test_447,CRC_test_447.svs,0 +CRC_test_448,CRC_test_448.svs,1 +CRC_test_449,CRC_test_449.svs,2 +CRC_test_450,CRC_test_450.svs,1 +CRC_test_451,CRC_test_451.svs,2 +CRC_test_452,CRC_test_452.svs,2 +CRC_test_453,CRC_test_453.svs,1 +CRC_test_454,CRC_test_454.svs,1 +CRC_test_455,CRC_test_455.svs,1 +CRC_test_456,CRC_test_456.svs,2 +CRC_test_457,CRC_test_457.svs,1 +CRC_test_458,CRC_test_458.svs,2 +CRC_test_459,CRC_test_459.svs,1 +CRC_test_460,CRC_test_460.svs,2 +CRC_test_461,CRC_test_461.svs,0 +CRC_test_462,CRC_test_462.svs,1 +CRC_test_463,CRC_test_463.svs,1 +CRC_test_464,CRC_test_464.svs,1 +CRC_test_465,CRC_test_465.svs,1 +CRC_test_466,CRC_test_466.svs,1 +CRC_test_467,CRC_test_467.svs,2 +CRC_test_468,CRC_test_468.svs,2 +CRC_test_469,CRC_test_469.svs,0 +CRC_test_470,CRC_test_470.svs,0 +CRC_test_471,CRC_test_471.svs,1 +CRC_test_472,CRC_test_472.svs,2 +CRC_test_473,CRC_test_473.svs,0 +CRC_test_474,CRC_test_474.svs,2 +CRC_test_475,CRC_test_475.svs,0 +CRC_test_476,CRC_test_476.svs,2 +CRC_test_477,CRC_test_477.svs,2 +CRC_test_478,CRC_test_478.svs,0 +CRC_test_479,CRC_test_479.svs,1 +CRC_test_480,CRC_test_480.svs,1 +CRC_test_481,CRC_test_481.svs,1 +CRC_test_482,CRC_test_482.svs,2 +CRC_test_483,CRC_test_483.svs,2 +CRC_test_484,CRC_test_484.svs,1 +CRC_test_485,CRC_test_485.svs,1 +CRC_test_486,CRC_test_486.svs,1 +CRC_test_487,CRC_test_487.svs,2 +CRC_test_488,CRC_test_488.svs,1 +CRC_test_489,CRC_test_489.svs,2 +CRC_test_490,CRC_test_490.svs,2 +CRC_test_491,CRC_test_491.svs,0 +CRC_test_492,CRC_test_492.svs,1 +CRC_test_493,CRC_test_493.svs,1 +CRC_test_494,CRC_test_494.svs,0 +CRC_test_495,CRC_test_495.svs,1 +CRC_test_496,CRC_test_496.svs,1 +CRC_test_497,CRC_test_497.svs,0 +CRC_test_498,CRC_test_498.svs,0 +CRC_test_499,CRC_test_499.svs,0 +CRC_test_500,CRC_test_500.svs,2 +CRC_test_501,CRC_test_501.svs,0 +CRC_test_502,CRC_test_502.svs,2 +CRC_test_503,CRC_test_503.svs,1 +CRC_test_504,CRC_test_504.svs,2 +CRC_test_505,CRC_test_505.svs,1 +CRC_test_506,CRC_test_506.svs,1 +CRC_test_507,CRC_test_507.svs,1 +CRC_test_508,CRC_test_508.svs,1 +CRC_test_509,CRC_test_509.svs,2 +CRC_test_510,CRC_test_510.svs,1 +CRC_test_511,CRC_test_511.svs,1 +CRC_test_512,CRC_test_512.svs,1 +CRC_test_513,CRC_test_513.svs,0 +CRC_test_514,CRC_test_514.svs,1 +CRC_test_515,CRC_test_515.svs,2 +CRC_test_516,CRC_test_516.svs,1 +CRC_test_517,CRC_test_517.svs,1 +CRC_test_518,CRC_test_518.svs,1 +CRC_test_519,CRC_test_519.svs,0 +CRC_test_520,CRC_test_520.svs,0 +CRC_test_521,CRC_test_521.svs,1 +CRC_test_522,CRC_test_522.svs,2 +CRC_test_523,CRC_test_523.svs,2 +CRC_test_524,CRC_test_524.svs,1 +CRC_test_525,CRC_test_525.svs,1 +CRC_test_526,CRC_test_526.svs,0 +CRC_test_527,CRC_test_527.svs,0 +CRC_test_528,CRC_test_528.svs,0 +CRC_test_529,CRC_test_529.svs,1 +CRC_test_530,CRC_test_530.svs,1 +CRC_test_531,CRC_test_531.svs,1 +CRC_test_532,CRC_test_532.svs,2 +CRC_test_533,CRC_test_533.svs,0 +CRC_test_534,CRC_test_534.svs,2 +CRC_test_535,CRC_test_535.svs,1 +CRC_test_536,CRC_test_536.svs,0 +CRC_test_537,CRC_test_537.svs,1 +CRC_test_538,CRC_test_538.svs,0 +CRC_test_539,CRC_test_539.svs,2 +CRC_test_540,CRC_test_540.svs,0 +CRC_test_541,CRC_test_541.svs,1 +CRC_test_542,CRC_test_542.svs,1 +CRC_test_543,CRC_test_543.svs,1 +CRC_test_544,CRC_test_544.svs,2 +CRC_test_545,CRC_test_545.svs,1 +CRC_test_546,CRC_test_546.svs,1 +CRC_test_547,CRC_test_547.svs,1 +CRC_test_548,CRC_test_548.svs,1 +CRC_test_549,CRC_test_549.svs,1 +CRC_test_550,CRC_test_550.svs,1 +CRC_test_551,CRC_test_551.svs,1 +CRC_test_552,CRC_test_552.svs,1 +CRC_test_553,CRC_test_553.svs,2 +CRC_test_554,CRC_test_554.svs,1 +CRC_test_555,CRC_test_555.svs,0 +CRC_test_556,CRC_test_556.svs,1 +CRC_test_557,CRC_test_557.svs,0 +CRC_test_558,CRC_test_558.svs,2 +CRC_test_559,CRC_test_559.svs,1 +CRC_test_560,CRC_test_560.svs,1 +CRC_test_561,CRC_test_561.svs,2 +CRC_test_562,CRC_test_562.svs,1 +CRC_test_563,CRC_test_563.svs,0 +CRC_test_564,CRC_test_564.svs,1 +CRC_test_565,CRC_test_565.svs,0 +CRC_test_566,CRC_test_566.svs,1 +CRC_test_567,CRC_test_567.svs,1 +CRC_test_568,CRC_test_568.svs,2 +CRC_test_569,CRC_test_569.svs,1 +CRC_test_570,CRC_test_570.svs,2 +CRC_test_571,CRC_test_571.svs,1 +CRC_test_572,CRC_test_572.svs,1 +CRC_test_573,CRC_test_573.svs,1 +CRC_test_574,CRC_test_574.svs,0 +CRC_test_575,CRC_test_575.svs,1 +CRC_test_576,CRC_test_576.svs,1 +CRC_test_577,CRC_test_577.svs,1 +CRC_test_578,CRC_test_578.svs,2 +CRC_test_579,CRC_test_579.svs,0 +CRC_test_580,CRC_test_580.svs,0 +CRC_test_581,CRC_test_581.svs,1 +CRC_test_582,CRC_test_582.svs,2 +CRC_test_583,CRC_test_583.svs,2 +CRC_test_584,CRC_test_584.svs,1 +CRC_test_585,CRC_test_585.svs,1 +CRC_test_586,CRC_test_586.svs,1 +CRC_test_587,CRC_test_587.svs,0 +CRC_test_588,CRC_test_588.svs,1 +CRC_test_589,CRC_test_589.svs,1 +CRC_test_590,CRC_test_590.svs,1 +CRC_test_591,CRC_test_591.svs,1 +CRC_test_592,CRC_test_592.svs,1 +CRC_test_593,CRC_test_593.svs,1 +CRC_test_594,CRC_test_594.svs,1 +CRC_test_595,CRC_test_595.svs,1 +CRC_test_596,CRC_test_596.svs,1 +CRC_test_597,CRC_test_597.svs,1 +CRC_test_598,CRC_test_598.svs,2 +CRC_test_599,CRC_test_599.svs,1 +CRC_test_600,CRC_test_600.svs,1 +CRC_test_601,CRC_test_601.svs,2 +CRC_test_602,CRC_test_602.svs,1 +CRC_test_603,CRC_test_603.svs,0 +CRC_test_604,CRC_test_604.svs,1 +CRC_test_605,CRC_test_605.svs,0 +CRC_test_606,CRC_test_606.svs,1 +CRC_test_607,CRC_test_607.svs,1 +CRC_test_608,CRC_test_608.svs,1 +CRC_test_609,CRC_test_609.svs,1 +CRC_test_610,CRC_test_610.svs,2 +CRC_test_611,CRC_test_611.svs,1 +CRC_test_612,CRC_test_612.svs,2 +CRC_test_613,CRC_test_613.svs,2 +CRC_test_614,CRC_test_614.svs,0 +CRC_test_615,CRC_test_615.svs,2 +CRC_test_616,CRC_test_616.svs,1 +CRC_test_617,CRC_test_617.svs,2 +CRC_test_618,CRC_test_618.svs,0 +CRC_test_619,CRC_test_619.svs,1 +CRC_test_620,CRC_test_620.svs,1 +CRC_test_621,CRC_test_621.svs,1 +CRC_test_622,CRC_test_622.svs,0 +CRC_test_623,CRC_test_623.svs,1 +CRC_test_624,CRC_test_624.svs,2 +CRC_test_625,CRC_test_625.svs,2 +CRC_test_626,CRC_test_626.svs,1 +CRC_test_627,CRC_test_627.svs,0 +CRC_test_628,CRC_test_628.svs,2 +CRC_test_629,CRC_test_629.svs,2 +CRC_test_630,CRC_test_630.svs,2 +CRC_test_631,CRC_test_631.svs,2 +CRC_test_632,CRC_test_632.svs,0 +CRC_test_633,CRC_test_633.svs,1 +CRC_test_634,CRC_test_634.svs,2 +CRC_test_635,CRC_test_635.svs,2 +CRC_test_636,CRC_test_636.svs,2 +CRC_test_637,CRC_test_637.svs,2 +CRC_test_638,CRC_test_638.svs,1 +CRC_test_639,CRC_test_639.svs,1 +CRC_test_640,CRC_test_640.svs,1 +CRC_test_641,CRC_test_641.svs,1 +CRC_test_642,CRC_test_642.svs,1 +CRC_test_643,CRC_test_643.svs,1 +CRC_test_644,CRC_test_644.svs,1 +CRC_test_645,CRC_test_645.svs,2 +CRC_test_646,CRC_test_646.svs,1 +CRC_test_647,CRC_test_647.svs,0 +CRC_test_648,CRC_test_648.svs,1 +CRC_test_649,CRC_test_649.svs,2 +CRC_test_650,CRC_test_650.svs,1 +CRC_test_651,CRC_test_651.svs,1 +CRC_test_652,CRC_test_652.svs,2 +CRC_test_653,CRC_test_653.svs,1 +CRC_test_654,CRC_test_654.svs,2 +CRC_test_655,CRC_test_655.svs,2 +CRC_test_656,CRC_test_656.svs,0 +CRC_test_657,CRC_test_657.svs,0 +CRC_test_658,CRC_test_658.svs,1 +CRC_test_659,CRC_test_659.svs,1 +CRC_test_660,CRC_test_660.svs,2 +CRC_test_661,CRC_test_661.svs,2 +CRC_test_662,CRC_test_662.svs,1 +CRC_test_663,CRC_test_663.svs,1 +CRC_test_664,CRC_test_664.svs,2 +CRC_test_665,CRC_test_665.svs,1 +CRC_test_666,CRC_test_666.svs,1 +CRC_test_667,CRC_test_667.svs,2 +CRC_test_668,CRC_test_668.svs,0 +CRC_test_669,CRC_test_669.svs,0 +CRC_test_670,CRC_test_670.svs,2 +CRC_test_671,CRC_test_671.svs,2 +CRC_test_672,CRC_test_672.svs,0 +CRC_test_673,CRC_test_673.svs,1 +CRC_test_674,CRC_test_674.svs,1 +CRC_test_675,CRC_test_675.svs,0 +CRC_test_676,CRC_test_676.svs,0 +CRC_test_677,CRC_test_677.svs,1 +CRC_test_678,CRC_test_678.svs,0 +CRC_test_679,CRC_test_679.svs,2 +CRC_test_680,CRC_test_680.svs,2 +CRC_test_681,CRC_test_681.svs,0 +CRC_test_682,CRC_test_682.svs,1 +CRC_test_683,CRC_test_683.svs,1 +CRC_test_684,CRC_test_684.svs,1 +CRC_test_685,CRC_test_685.svs,1 +CRC_test_686,CRC_test_686.svs,1 +CRC_test_687,CRC_test_687.svs,1 +CRC_test_688,CRC_test_688.svs,1 +CRC_test_689,CRC_test_689.svs,2 +CRC_test_690,CRC_test_690.svs,1 +CRC_test_691,CRC_test_691.svs,1 +CRC_test_692,CRC_test_692.svs,2 +CRC_test_693,CRC_test_693.svs,1 +CRC_test_694,CRC_test_694.svs,2 +CRC_test_695,CRC_test_695.svs,0 +CRC_test_696,CRC_test_696.svs,2 +CRC_test_697,CRC_test_697.svs,0 +CRC_test_698,CRC_test_698.svs,0 +CRC_test_699,CRC_test_699.svs,0 +CRC_test_700,CRC_test_700.svs,1 +CRC_test_701,CRC_test_701.svs,1 +CRC_test_702,CRC_test_702.svs,1 +CRC_test_703,CRC_test_703.svs,2 +CRC_test_704,CRC_test_704.svs,2 +CRC_test_705,CRC_test_705.svs,2 +CRC_test_706,CRC_test_706.svs,0 +CRC_test_707,CRC_test_707.svs,1 +CRC_test_708,CRC_test_708.svs,2 +CRC_test_709,CRC_test_709.svs,2 +CRC_test_710,CRC_test_710.svs,0 +CRC_test_711,CRC_test_711.svs,2 +CRC_test_712,CRC_test_712.svs,0 +CRC_test_713,CRC_test_713.svs,2 +CRC_test_714,CRC_test_714.svs,1 +CRC_test_715,CRC_test_715.svs,2 +CRC_test_716,CRC_test_716.svs,2 +CRC_test_717,CRC_test_717.svs,2 +CRC_test_718,CRC_test_718.svs,1 +CRC_test_719,CRC_test_719.svs,1 +CRC_test_720,CRC_test_720.svs,2 +CRC_test_721,CRC_test_721.svs,2 +CRC_test_722,CRC_test_722.svs,1 +CRC_test_723,CRC_test_723.svs,0 +CRC_test_724,CRC_test_724.svs,2 +CRC_test_725,CRC_test_725.svs,1 +CRC_test_726,CRC_test_726.svs,2 +CRC_test_727,CRC_test_727.svs,2 +CRC_test_728,CRC_test_728.svs,1 +CRC_test_729,CRC_test_729.svs,1 +CRC_test_730,CRC_test_730.svs,1 +CRC_test_731,CRC_test_731.svs,1 +CRC_test_732,CRC_test_732.svs,1 +CRC_test_733,CRC_test_733.svs,1 +CRC_test_734,CRC_test_734.svs,1 +CRC_test_735,CRC_test_735.svs,0 +CRC_test_736,CRC_test_736.svs,1 +CRC_test_737,CRC_test_737.svs,2 +CRC_test_738,CRC_test_738.svs,2 +CRC_test_739,CRC_test_739.svs,2 +CRC_test_740,CRC_test_740.svs,1 +CRC_test_741,CRC_test_741.svs,1 +CRC_test_742,CRC_test_742.svs,0 +CRC_test_743,CRC_test_743.svs,0 +CRC_test_744,CRC_test_744.svs,0 +CRC_test_745,CRC_test_745.svs,1 +CRC_test_746,CRC_test_746.svs,2 +CRC_test_747,CRC_test_747.svs,1 +CRC_test_748,CRC_test_748.svs,1 +CRC_test_749,CRC_test_749.svs,2 +CRC_test_750,CRC_test_750.svs,2 +CRC_test_751,CRC_test_751.svs,0 +CRC_test_752,CRC_test_752.svs,1 +CRC_test_753,CRC_test_753.svs,1 +CRC_test_754,CRC_test_754.svs,2 +CRC_test_755,CRC_test_755.svs,1 +CRC_test_756,CRC_test_756.svs,2 +CRC_test_757,CRC_test_757.svs,0 +CRC_test_758,CRC_test_758.svs,0 +CRC_test_759,CRC_test_759.svs,1 +CRC_test_760,CRC_test_760.svs,0 +CRC_test_761,CRC_test_761.svs,1 +CRC_test_762,CRC_test_762.svs,1 +CRC_test_763,CRC_test_763.svs,2 +CRC_test_764,CRC_test_764.svs,2 +CRC_test_765,CRC_test_765.svs,1 +CRC_test_766,CRC_test_766.svs,1 +CRC_test_767,CRC_test_767.svs,2 +CRC_test_768,CRC_test_768.svs,1 +CRC_test_769,CRC_test_769.svs,2 +CRC_test_770,CRC_test_770.svs,1 +CRC_test_771,CRC_test_771.svs,1 +CRC_test_772,CRC_test_772.svs,0 +CRC_test_773,CRC_test_773.svs,2 +CRC_test_774,CRC_test_774.svs,1 +CRC_test_775,CRC_test_775.svs,2 +CRC_test_776,CRC_test_776.svs,1 +CRC_test_777,CRC_test_777.svs,1 +CRC_test_778,CRC_test_778.svs,0 +CRC_test_779,CRC_test_779.svs,0 +CRC_test_780,CRC_test_780.svs,2 +CRC_test_781,CRC_test_781.svs,0 +CRC_test_782,CRC_test_782.svs,2 +CRC_test_783,CRC_test_783.svs,2 +CRC_test_784,CRC_test_784.svs,0 +CRC_test_785,CRC_test_785.svs,1 +CRC_test_786,CRC_test_786.svs,1 +CRC_test_787,CRC_test_787.svs,1 +CRC_test_788,CRC_test_788.svs,1 +CRC_test_789,CRC_test_789.svs,0 +CRC_test_790,CRC_test_790.svs,0 +CRC_test_791,CRC_test_791.svs,2 +CRC_test_792,CRC_test_792.svs,0 +CRC_test_793,CRC_test_793.svs,2 +CRC_test_794,CRC_test_794.svs,1 +CRC_test_795,CRC_test_795.svs,2 +CRC_test_796,CRC_test_796.svs,1 +CRC_test_797,CRC_test_797.svs,2 +CRC_test_798,CRC_test_798.svs,0 +CRC_test_799,CRC_test_799.svs,0 +CRC_test_800,CRC_test_800.svs,1 +CRC_test_801,CRC_test_801.svs,1 +CRC_test_802,CRC_test_802.svs,2 +CRC_test_803,CRC_test_803.svs,0 +CRC_test_804,CRC_test_804.svs,0 +CRC_test_805,CRC_test_805.svs,1 +CRC_test_806,CRC_test_806.svs,1 +CRC_test_807,CRC_test_807.svs,1 +CRC_test_808,CRC_test_808.svs,1 +CRC_test_809,CRC_test_809.svs,0 +CRC_test_810,CRC_test_810.svs,2 +CRC_test_811,CRC_test_811.svs,2 +CRC_test_812,CRC_test_812.svs,1 +CRC_test_813,CRC_test_813.svs,0 +CRC_test_814,CRC_test_814.svs,1 +CRC_test_815,CRC_test_815.svs,2 +CRC_test_816,CRC_test_816.svs,0 +CRC_test_817,CRC_test_817.svs,2 +CRC_test_818,CRC_test_818.svs,1 +CRC_test_819,CRC_test_819.svs,1 +CRC_test_820,CRC_test_820.svs,0 +CRC_test_821,CRC_test_821.svs,2 +CRC_test_822,CRC_test_822.svs,0 +CRC_test_823,CRC_test_823.svs,1 +CRC_test_824,CRC_test_824.svs,1 +CRC_test_825,CRC_test_825.svs,2 +CRC_test_826,CRC_test_826.svs,1 +CRC_test_827,CRC_test_827.svs,1 +CRC_test_828,CRC_test_828.svs,2 +CRC_test_829,CRC_test_829.svs,1 +CRC_test_830,CRC_test_830.svs,2 +CRC_test_831,CRC_test_831.svs,1 +CRC_test_832,CRC_test_832.svs,2 +CRC_test_833,CRC_test_833.svs,1 +CRC_test_834,CRC_test_834.svs,1 +CRC_test_835,CRC_test_835.svs,0 +CRC_test_836,CRC_test_836.svs,1 +CRC_test_837,CRC_test_837.svs,1 +CRC_test_838,CRC_test_838.svs,1 +CRC_test_839,CRC_test_839.svs,2 +CRC_test_840,CRC_test_840.svs,1 +CRC_test_841,CRC_test_841.svs,1 +CRC_test_842,CRC_test_842.svs,1 +CRC_test_843,CRC_test_843.svs,2 +CRC_test_844,CRC_test_844.svs,1 +CRC_test_845,CRC_test_845.svs,1 +CRC_test_846,CRC_test_846.svs,1 +CRC_test_847,CRC_test_847.svs,2 +CRC_test_848,CRC_test_848.svs,2 +CRC_test_849,CRC_test_849.svs,1 +CRC_test_850,CRC_test_850.svs,2 +CRC_test_851,CRC_test_851.svs,2 +CRC_test_852,CRC_test_852.svs,1 +CRC_test_853,CRC_test_853.svs,2 +CRC_test_854,CRC_test_854.svs,1 +CRC_test_855,CRC_test_855.svs,1 +CRC_test_856,CRC_test_856.svs,2 +CRC_test_857,CRC_test_857.svs,1 +CRC_test_858,CRC_test_858.svs,1 +CRC_test_859,CRC_test_859.svs,1 +CRC_test_860,CRC_test_860.svs,1 +CRC_test_861,CRC_test_861.svs,1 +CRC_test_862,CRC_test_862.svs,0 +CRC_test_863,CRC_test_863.svs,1 +CRC_test_864,CRC_test_864.svs,1 +CRC_test_865,CRC_test_865.svs,2 +CRC_test_866,CRC_test_866.svs,2 +CRC_test_867,CRC_test_867.svs,1 +CRC_test_868,CRC_test_868.svs,0 +CRC_test_869,CRC_test_869.svs,1 +CRC_test_870,CRC_test_870.svs,1 +CRC_test_871,CRC_test_871.svs,2 +CRC_test_872,CRC_test_872.svs,1 +CRC_test_873,CRC_test_873.svs,0 +CRC_test_874,CRC_test_874.svs,1 +CRC_test_875,CRC_test_875.svs,0 +CRC_test_876,CRC_test_876.svs,2 +CRC_test_877,CRC_test_877.svs,1 +CRC_test_878,CRC_test_878.svs,1 +CRC_test_879,CRC_test_879.svs,2 +CRC_test_880,CRC_test_880.svs,2 +CRC_test_881,CRC_test_881.svs,1 +CRC_test_882,CRC_test_882.svs,0 +CRC_test_883,CRC_test_883.svs,1 +CRC_test_884,CRC_test_884.svs,2 +CRC_test_885,CRC_test_885.svs,1 +CRC_test_886,CRC_test_886.svs,2 +CRC_test_887,CRC_test_887.svs,1 +CRC_test_888,CRC_test_888.svs,1 +CRC_test_889,CRC_test_889.svs,1 +CRC_test_890,CRC_test_890.svs,1 +CRC_test_891,CRC_test_891.svs,1 +CRC_test_892,CRC_test_892.svs,1 +CRC_test_893,CRC_test_893.svs,1 +CRC_test_894,CRC_test_894.svs,0 +CRC_test_895,CRC_test_895.svs,1 +CRC_test_896,CRC_test_896.svs,2 +CRC_test_897,CRC_test_897.svs,0 +CRC_test_898,CRC_test_898.svs,0 +CRC_test_899,CRC_test_899.svs,0 diff --git a/tasks/imp_cervix/dysplasia_grading/config.yaml b/tasks/imp_cervix/dysplasia_grading/config.yaml new file mode 100644 index 0000000000000000000000000000000000000000..9c168377356339665ba40353903b2aaea240fbfe --- /dev/null +++ b/tasks/imp_cervix/dysplasia_grading/config.yaml @@ -0,0 +1,8 @@ +task_type: classification +organ: cervix +sample_col: filename +label_dict: + 0: "Non-neoplastic (NNeo)" + 1: "Low-grade squamous intraepithelial lesion (LSIL)" + 2: "High-grade squamous intraepithelial lesion (HSIL)" + 3: "Non-representative / other" diff --git a/tasks/imp_cervix/dysplasia_grading/task.csv b/tasks/imp_cervix/dysplasia_grading/task.csv new file mode 100644 index 0000000000000000000000000000000000000000..1e64b58335be58d874344a3ed6c9641294e7c714 --- /dev/null +++ b/tasks/imp_cervix/dysplasia_grading/task.csv @@ -0,0 +1,601 @@ +case_id,filename,label +cervix_000,cervix_000.svs,3 +cervix_001,cervix_001.svs,2 +cervix_002,cervix_002.svs,0 +cervix_003,cervix_003.svs,3 +cervix_004,cervix_004.svs,2 +cervix_005,cervix_005.svs,3 +cervix_006,cervix_006.svs,2 +cervix_007,cervix_007.svs,0 +cervix_008,cervix_008.svs,2 +cervix_009,cervix_009.svs,2 +cervix_010,cervix_010.svs,1 +cervix_011,cervix_011.svs,0 +cervix_012,cervix_012.svs,1 +cervix_013,cervix_013.svs,0 +cervix_014,cervix_014.svs,2 +cervix_015,cervix_015.svs,1 +cervix_016,cervix_016.svs,0 +cervix_017,cervix_017.svs,0 +cervix_018,cervix_018.svs,0 +cervix_019,cervix_019.svs,1 +cervix_020,cervix_020.svs,1 +cervix_021,cervix_021.svs,0 +cervix_022,cervix_022.svs,1 +cervix_023,cervix_023.svs,1 +cervix_024,cervix_024.svs,0 +cervix_025,cervix_025.svs,2 +cervix_026,cervix_026.svs,1 +cervix_027,cervix_027.svs,0 +cervix_028,cervix_028.svs,2 +cervix_029,cervix_029.svs,1 +cervix_030,cervix_030.svs,0 +cervix_031,cervix_031.svs,3 +cervix_032,cervix_032.svs,2 +cervix_033,cervix_033.svs,0 +cervix_034,cervix_034.svs,0 +cervix_035,cervix_035.svs,2 +cervix_036,cervix_036.svs,2 +cervix_037,cervix_037.svs,0 +cervix_038,cervix_038.svs,0 +cervix_039,cervix_039.svs,1 +cervix_040,cervix_040.svs,1 +cervix_041,cervix_041.svs,0 +cervix_042,cervix_042.svs,2 +cervix_043,cervix_043.svs,1 +cervix_044,cervix_044.svs,3 +cervix_045,cervix_045.svs,0 +cervix_046,cervix_046.svs,1 +cervix_047,cervix_047.svs,1 +cervix_048,cervix_048.svs,2 +cervix_049,cervix_049.svs,1 +cervix_050,cervix_050.svs,2 +cervix_051,cervix_051.svs,0 +cervix_052,cervix_052.svs,1 +cervix_053,cervix_053.svs,3 +cervix_054,cervix_054.svs,0 +cervix_055,cervix_055.svs,2 +cervix_056,cervix_056.svs,1 +cervix_057,cervix_057.svs,1 +cervix_058,cervix_058.svs,0 +cervix_059,cervix_059.svs,0 +cervix_060,cervix_060.svs,3 +cervix_061,cervix_061.svs,0 +cervix_062,cervix_062.svs,1 +cervix_063,cervix_063.svs,0 +cervix_064,cervix_064.svs,2 +cervix_065,cervix_065.svs,2 +cervix_066,cervix_066.svs,0 +cervix_067,cervix_067.svs,0 +cervix_068,cervix_068.svs,1 +cervix_069,cervix_069.svs,1 +cervix_070,cervix_070.svs,0 +cervix_071,cervix_071.svs,0 +cervix_072,cervix_072.svs,3 +cervix_073,cervix_073.svs,0 +cervix_074,cervix_074.svs,3 +cervix_075,cervix_075.svs,3 +cervix_076,cervix_076.svs,2 +cervix_077,cervix_077.svs,2 +cervix_078,cervix_078.svs,0 +cervix_079,cervix_079.svs,2 +cervix_080,cervix_080.svs,0 +cervix_081,cervix_081.svs,1 +cervix_082,cervix_082.svs,0 +cervix_083,cervix_083.svs,1 +cervix_084,cervix_084.svs,1 +cervix_085,cervix_085.svs,0 +cervix_086,cervix_086.svs,0 +cervix_087,cervix_087.svs,2 +cervix_088,cervix_088.svs,1 +cervix_089,cervix_089.svs,1 +cervix_090,cervix_090.svs,1 +cervix_091,cervix_091.svs,1 +cervix_092,cervix_092.svs,1 +cervix_093,cervix_093.svs,1 +cervix_094,cervix_094.svs,3 +cervix_095,cervix_095.svs,1 +cervix_096,cervix_096.svs,1 +cervix_097,cervix_097.svs,1 +cervix_098,cervix_098.svs,1 +cervix_099,cervix_099.svs,1 +cervix_100,cervix_100.svs,0 +cervix_101,cervix_101.svs,3 +cervix_102,cervix_102.svs,1 +cervix_103,cervix_103.svs,2 +cervix_104,cervix_104.svs,0 +cervix_105,cervix_105.svs,3 +cervix_106,cervix_106.svs,1 +cervix_107,cervix_107.svs,0 +cervix_108,cervix_108.svs,1 +cervix_109,cervix_109.svs,1 +cervix_110,cervix_110.svs,0 +cervix_111,cervix_111.svs,0 +cervix_112,cervix_112.svs,0 +cervix_113,cervix_113.svs,0 +cervix_114,cervix_114.svs,3 +cervix_115,cervix_115.svs,1 +cervix_116,cervix_116.svs,3 +cervix_117,cervix_117.svs,1 +cervix_118,cervix_118.svs,1 +cervix_119,cervix_119.svs,3 +cervix_120,cervix_120.svs,0 +cervix_121,cervix_121.svs,0 +cervix_122,cervix_122.svs,2 +cervix_123,cervix_123.svs,0 +cervix_124,cervix_124.svs,1 +cervix_125,cervix_125.svs,0 +cervix_126,cervix_126.svs,0 +cervix_127,cervix_127.svs,0 +cervix_128,cervix_128.svs,1 +cervix_129,cervix_129.svs,0 +cervix_130,cervix_130.svs,1 +cervix_131,cervix_131.svs,0 +cervix_132,cervix_132.svs,0 +cervix_133,cervix_133.svs,2 +cervix_134,cervix_134.svs,0 +cervix_135,cervix_135.svs,1 +cervix_136,cervix_136.svs,0 +cervix_137,cervix_137.svs,3 +cervix_138,cervix_138.svs,0 +cervix_139,cervix_139.svs,1 +cervix_140,cervix_140.svs,0 +cervix_141,cervix_141.svs,0 +cervix_142,cervix_142.svs,0 +cervix_143,cervix_143.svs,3 +cervix_144,cervix_144.svs,1 +cervix_145,cervix_145.svs,2 +cervix_146,cervix_146.svs,1 +cervix_147,cervix_147.svs,1 +cervix_148,cervix_148.svs,0 +cervix_149,cervix_149.svs,1 +cervix_150,cervix_150.svs,1 +cervix_151,cervix_151.svs,3 +cervix_152,cervix_152.svs,1 +cervix_153,cervix_153.svs,0 +cervix_154,cervix_154.svs,0 +cervix_155,cervix_155.svs,0 +cervix_156,cervix_156.svs,1 +cervix_157,cervix_157.svs,1 +cervix_158,cervix_158.svs,0 +cervix_159,cervix_159.svs,1 +cervix_160,cervix_160.svs,1 +cervix_161,cervix_161.svs,1 +cervix_162,cervix_162.svs,1 +cervix_163,cervix_163.svs,1 +cervix_164,cervix_164.svs,0 +cervix_165,cervix_165.svs,1 +cervix_166,cervix_166.svs,3 +cervix_167,cervix_167.svs,2 +cervix_168,cervix_168.svs,1 +cervix_169,cervix_169.svs,3 +cervix_170,cervix_170.svs,0 +cervix_171,cervix_171.svs,2 +cervix_172,cervix_172.svs,2 +cervix_173,cervix_173.svs,0 +cervix_174,cervix_174.svs,1 +cervix_175,cervix_175.svs,0 +cervix_176,cervix_176.svs,3 +cervix_177,cervix_177.svs,1 +cervix_178,cervix_178.svs,0 +cervix_179,cervix_179.svs,1 +cervix_180,cervix_180.svs,1 +cervix_181,cervix_181.svs,1 +cervix_182,cervix_182.svs,1 +cervix_183,cervix_183.svs,1 +cervix_184,cervix_184.svs,0 +cervix_185,cervix_185.svs,1 +cervix_186,cervix_186.svs,2 +cervix_187,cervix_187.svs,0 +cervix_188,cervix_188.svs,1 +cervix_189,cervix_189.svs,1 +cervix_190,cervix_190.svs,0 +cervix_191,cervix_191.svs,0 +cervix_192,cervix_192.svs,1 +cervix_193,cervix_193.svs,0 +cervix_194,cervix_194.svs,1 +cervix_195,cervix_195.svs,1 +cervix_196,cervix_196.svs,1 +cervix_197,cervix_197.svs,2 +cervix_198,cervix_198.svs,0 +cervix_199,cervix_199.svs,2 +cervix_200,cervix_200.svs,2 +cervix_201,cervix_201.svs,3 +cervix_202,cervix_202.svs,0 +cervix_203,cervix_203.svs,0 +cervix_204,cervix_204.svs,0 +cervix_205,cervix_205.svs,2 +cervix_206,cervix_206.svs,0 +cervix_207,cervix_207.svs,0 +cervix_208,cervix_208.svs,0 +cervix_209,cervix_209.svs,0 +cervix_210,cervix_210.svs,0 +cervix_211,cervix_211.svs,2 +cervix_212,cervix_212.svs,0 +cervix_213,cervix_213.svs,3 +cervix_214,cervix_214.svs,0 +cervix_215,cervix_215.svs,3 +cervix_216,cervix_216.svs,0 +cervix_217,cervix_217.svs,1 +cervix_218,cervix_218.svs,1 +cervix_219,cervix_219.svs,0 +cervix_220,cervix_220.svs,1 +cervix_221,cervix_221.svs,0 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