Image-to-Image
Diffusers
pathology
microscopy
image-segmentation
instance-segmentation
lora
qwen-image-edit
Instructions to use Biogod/spatial-banana with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Diffusers
How to use Biogod/spatial-banana with Diffusers:
pip install -U diffusers transformers accelerate
import torch from diffusers import DiffusionPipeline from diffusers.utils import load_image # switch to "mps" for apple devices pipe = DiffusionPipeline.from_pretrained("Qwen/Qwen-Image-Edit-2511", dtype=torch.bfloat16, device_map="cuda") pipe.load_lora_weights("Biogod/spatial-banana") prompt = "Turn this cat into a dog" input_image = load_image("https://huggingface.co/datasets/huggingface/documentation-images/resolve/main/diffusers/cat.png") image = pipe(image=input_image, prompt=prompt).images[0] - Inference
- Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- Draw Things
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| "batch_alignment_reduced_sources": [ | |
| "cellpose", | |
| "dsb_fixed", | |
| "s2_stardist" | |
| ], | |
| "batch_compatible_large_count": 320, | |
| "dev": [ | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2c_e_coli/pos0_frame_56.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2c_e_coli", | |
| "stem": "pos0_frame_56.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2c_e_coli/pos0_frame_56.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2c_e_coli/pos0_frame_56.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2c_e_coli/pos1_frame_23.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2c_e_coli", | |
| "stem": "pos1_frame_23.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2c_e_coli/pos1_frame_23.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2c_e_coli/pos1_frame_23.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_1_SplineDist_dataset/train_1_4.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_1_SplineDist_dataset", | |
| "stem": "train_1_4.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_1_4.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_1_4.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_1_SplineDist_dataset/train_4_3.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_1_SplineDist_dataset", | |
| "stem": "train_4_3.b0", | |
| "target": "bacterial_cell", | |
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| "y_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_4_3.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_1_SplineDist_dataset/train_7_1.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_1_SplineDist_dataset", | |
| "stem": "train_7_1.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_7_1.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_7_1.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_1_SplineDist_dataset/train_8_4.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_1_SplineDist_dataset", | |
| "stem": "train_8_4.b0", | |
| "target": "bacterial_cell", | |
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| "y_member": "cellsam_v1.2/train/2d_1_SplineDist_dataset/train_8_4.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_2_b_subtilis/train_26.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_2_b_subtilis", | |
| "stem": "train_26.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_26.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_26.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_2_b_subtilis/train_33.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_2_b_subtilis", | |
| "stem": "train_33.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_33.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_33.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_2_b_subtilis/train_55.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_2_b_subtilis", | |
| "stem": "train_55.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_55.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_55.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2d_2_b_subtilis/train_69.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2d_2_b_subtilis", | |
| "stem": "train_69.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_69.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2d_2_b_subtilis/train_69.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2e_e_coli/pos_0_slice_1.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2e_e_coli", | |
| "stem": "pos_0_slice_1.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2e_e_coli/pos_0_slice_1.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2e_e_coli/pos_0_slice_1.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2e_e_coli/pos_1_slice_10.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2e_e_coli", | |
| "stem": "pos_1_slice_10.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2e_e_coli/pos_1_slice_10.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2e_e_coli/pos_1_slice_10.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2e_e_coli/pos_4_slice_20.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2e_e_coli", | |
| "stem": "pos_4_slice_20.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2e_e_coli/pos_4_slice_20.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2e_e_coli/pos_4_slice_20.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "deepbacs", | |
| "fov_key": "2e_e_coli/stack_5_slice_5.b0", | |
| "paper_category": "bacteria", | |
| "source_dataset": "2e_e_coli", | |
| "stem": "stack_5_slice_5.b0", | |
| "target": "bacterial_cell", | |
| "x_member": "cellsam_v1.2/train/2e_e_coli/stack_5_slice_5.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/2e_e_coli/stack_5_slice_5.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "3T3_ep_microscopy/3T3_med_cyto_slice00_save_version_1.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "3T3_ep_microscopy", | |
| "stem": "3T3_med_cyto_slice00_save_version_1.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/3T3_ep_microscopy/3T3_med_cyto_slice00_save_version_1.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/3T3_ep_microscopy/3T3_med_cyto_slice00_save_version_1.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "3T3_ep_microscopy/3T3_med_cyto_slice08_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "3T3_ep_microscopy", | |
| "stem": "3T3_med_cyto_slice08_save_version_0.b0", | |
| "target": "whole_cell", | |
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| { | |
| "dataset": "phase400", | |
| "fov_key": "3T3_ep_microscopy/3T3_med_cyto_slice21_save_version_1.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "3T3_ep_microscopy", | |
| "stem": "3T3_med_cyto_slice21_save_version_1.b0", | |
| "target": "whole_cell", | |
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| { | |
| "dataset": "phase400", | |
| "fov_key": "3T3_ep_microscopy/3T3_med_cyto_slice22_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "3T3_ep_microscopy", | |
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| "target": "whole_cell", | |
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| { | |
| "dataset": "phase400", | |
| "fov_key": "A549_ep_microscopy/A549_med_cyto_slice13_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "A549_ep_microscopy", | |
| "stem": "A549_med_cyto_slice13_save_version_0.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice13_save_version_0.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice13_save_version_0.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "A549_ep_microscopy/A549_med_cyto_slice35_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "A549_ep_microscopy", | |
| "stem": "A549_med_cyto_slice35_save_version_0.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice35_save_version_0.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice35_save_version_0.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "A549_ep_microscopy/A549_med_cyto_slice58_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "A549_ep_microscopy", | |
| "stem": "A549_med_cyto_slice58_save_version_0.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice58_save_version_0.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice58_save_version_0.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "A549_ep_microscopy/A549_med_cyto_slice79_save_version_0.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "A549_ep_microscopy", | |
| "stem": "A549_med_cyto_slice79_save_version_0.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice79_save_version_0.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/A549_ep_microscopy/A549_med_cyto_slice79_save_version_0.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "CHO_ep_microscopy/CHO_med_cyto_slice13.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "CHO_ep_microscopy", | |
| "stem": "CHO_med_cyto_slice13.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice13.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice13.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "CHO_ep_microscopy/CHO_med_cyto_slice24.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "CHO_ep_microscopy", | |
| "stem": "CHO_med_cyto_slice24.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice24.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice24.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "CHO_ep_microscopy/CHO_med_cyto_slice29.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "CHO_ep_microscopy", | |
| "stem": "CHO_med_cyto_slice29.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice29.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice29.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "CHO_ep_microscopy/CHO_med_cyto_slice34.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "CHO_ep_microscopy", | |
| "stem": "CHO_med_cyto_slice34.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice34.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/CHO_ep_microscopy/CHO_med_cyto_slice34.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "brifiseg", | |
| "fov_key": "Gendarme_BriFi/Task015_RPE1.b107", | |
| "paper_category": "nuclear", | |
| "source_dataset": "Gendarme_BriFi", | |
| "stem": "Task015_RPE1.b107", | |
| "target": "nucleus", | |
| "x_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b107.X.npy", | |
| "y_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b107.y.npy" | |
| }, | |
| { | |
| "dataset": "brifiseg", | |
| "fov_key": "Gendarme_BriFi/Task015_RPE1.b11", | |
| "paper_category": "nuclear", | |
| "source_dataset": "Gendarme_BriFi", | |
| "stem": "Task015_RPE1.b11", | |
| "target": "nucleus", | |
| "x_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b11.X.npy", | |
| "y_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b11.y.npy" | |
| }, | |
| { | |
| "dataset": "brifiseg", | |
| "fov_key": "Gendarme_BriFi/Task015_RPE1.b215", | |
| "paper_category": "nuclear", | |
| "source_dataset": "Gendarme_BriFi", | |
| "stem": "Task015_RPE1.b215", | |
| "target": "nucleus", | |
| "x_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b215.X.npy", | |
| "y_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b215.y.npy" | |
| }, | |
| { | |
| "dataset": "brifiseg", | |
| "fov_key": "Gendarme_BriFi/Task015_RPE1.b66", | |
| "paper_category": "nuclear", | |
| "source_dataset": "Gendarme_BriFi", | |
| "stem": "Task015_RPE1.b66", | |
| "target": "nucleus", | |
| "x_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b66.X.npy", | |
| "y_member": "cellsam_v1.2/train/Gendarme_BriFi/Task015_RPE1.b66.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "HEK293_ep_microscopy/HEK293_med_cyto_slice12.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "HEK293_ep_microscopy", | |
| "stem": "HEK293_med_cyto_slice12.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice12.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice12.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "HEK293_ep_microscopy/HEK293_med_cyto_slice13.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "HEK293_ep_microscopy", | |
| "stem": "HEK293_med_cyto_slice13.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice13.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice13.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "HEK293_ep_microscopy/HEK293_med_cyto_slice14.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "HEK293_ep_microscopy", | |
| "stem": "HEK293_med_cyto_slice14.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice14.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice14.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "HEK293_ep_microscopy/HEK293_med_cyto_slice18.b0", | |
| "paper_category": "cell_culture", | |
| "source_dataset": "HEK293_ep_microscopy", | |
| "stem": "HEK293_med_cyto_slice18.b0", | |
| "target": "whole_cell", | |
| "x_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice18.b0.X.npy", | |
| "y_member": "cellsam_v1.2/train/HEK293_ep_microscopy/HEK293_med_cyto_slice18.b0.y.npy" | |
| }, | |
| { | |
| "dataset": "phase400", | |
| "fov_key": "HeLa-S3_ep_microscopy/HeLa-S3_med_cyto_slice109.b0", | |
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| }, | |
| "unassessable_dev_sources": [ | |
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| "2b_fluorescence_dataset" | |
| ] | |
| } | |