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07fcdfe | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | #!/bin/bash
# Process COSMIC data
cd scripts/cosmic
python3 generate_cell_line_mutations_files.py
cd ../..
# Process COSMIC data
cd scripts/drugbank
python3 get_drug_targets.py
cd ../..
# Process PPI data
cd scripts/ppi
python3 export_ppi_all_genes.py
cd ../..
# Process LINCS data
cd scripts/lincs
python3 process_data.py
python3 process_data_healthy.py
python3 process_data_chemical_1.py
python3 process_data_chemical_2.py
python3 process_data_healthy_chemical.py
cd ../..
# Data preparation
cd scripts/rep-learning-approach-3
python3 export_data_for_torch_geometric.py
python3 export_data_for_torch_geometric_chemical.py
cd ../.. |