PrimateX / chimpanzee_brain /plans.json
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{
"dataset_name": "Dataset701_gorilla20Scalp_har_ALL",
"plans_name": "nnUNetPlans",
"original_median_spacing_after_transp": [
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"original_median_shape_after_transp": [
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],
"image_reader_writer": "SimpleITKIO",
"transpose_forward": [
1,
0,
2
],
"transpose_backward": [
1,
0,
2
],
"configurations": {
"2d": {
"data_identifier": "nnUNetPlans_2d",
"preprocessor_name": "DefaultPreprocessor",
"batch_size": 99,
"patch_size": [
128,
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],
"median_image_size_in_voxels": [
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],
"spacing": [
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],
"normalization_schemes": [
"ZScoreNormalization"
],
"use_mask_for_norm": [
false
],
"UNet_class_name": "PlainConvUNet",
"UNet_base_num_features": 32,
"n_conv_per_stage_encoder": [
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2,
2,
2,
2
],
"n_conv_per_stage_decoder": [
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2,
2,
2
],
"num_pool_per_axis": [
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"pool_op_kernel_sizes": [
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2,
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2,
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2,
2
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],
"conv_kernel_sizes": [
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]
],
"unet_max_num_features": 512,
"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
"resampling_fn_data_kwargs": {
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"order": 3,
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},
"resampling_fn_seg_kwargs": {
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},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
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"order": 1,
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},
"batch_dice": true
},
"3d_fullres": {
"data_identifier": "nnUNetPlans_3d_fullres",
"preprocessor_name": "DefaultPreprocessor",
"batch_size": 2,
"patch_size": [
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],
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"UNet_class_name": "PlainConvUNet",
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"n_conv_per_stage_encoder": [
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2,
2,
2
],
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2,
2,
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2,
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2
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2
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2,
2,
2
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2,
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2
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[
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3,
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],
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"resampling_fn_data": "resample_data_or_seg_to_shape",
"resampling_fn_seg": "resample_data_or_seg_to_shape",
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},
"resampling_fn_seg_kwargs": {
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},
"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
"resampling_fn_probabilities_kwargs": {
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"order": 1,
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},
"batch_dice": false
}
},
"experiment_planner_used": "ExperimentPlanner",
"label_manager": "LabelManager",
"foreground_intensity_properties_per_channel": {
"0": {
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"mean": 5.9711809158325195,
"median": 0.143633171916008,
"min": 0.0,
"percentile_00_5": 0.007873655296862125,
"percentile_99_5": 204.03576057434088,
"std": 29.671253204345703
}
}
}