Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,200 @@
|
|
| 1 |
-
---
|
| 2 |
-
license: mit
|
| 3 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
---
|
| 2 |
+
license: mit
|
| 3 |
+
pipeline_tag: image-classification
|
| 4 |
+
---
|
| 5 |
+
|
| 6 |
+
# Model Card for Model ID
|
| 7 |
+
|
| 8 |
+
<!-- Provide a quick summary of what the model is/does. -->
|
| 9 |
+
|
| 10 |
+
This modelcard aims to be a base template for new models. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/modelcard_template.md?plain=1).
|
| 11 |
+
|
| 12 |
+
## Model Details
|
| 13 |
+
|
| 14 |
+
### Model Description
|
| 15 |
+
|
| 16 |
+
This model is official best model released from the CHAMMI-75:pre-training multi-channel models with heterogeneous microscopy images currently under review at a conference.
|
| 17 |
+
This model was trained on the entire CHAMMI-75 dataset using the bag of channels method. It has acheived state of the art in 7/8 self-supervised learning benchmarks.
|
| 18 |
+
|
| 19 |
+
|
| 20 |
+
|
| 21 |
+
- **Developed by:** Vidit Agrawal, Juan Caicedo
|
| 22 |
+
- **Funded by [optional]:** [More Information Needed]
|
| 23 |
+
- **Shared by [optional]:** [More Information Needed]
|
| 24 |
+
- **Model type:** [More Information Needed]
|
| 25 |
+
- **Language(s) (NLP):** [More Information Needed]
|
| 26 |
+
- **License:** [More Information Needed]
|
| 27 |
+
- **Finetuned from model [optional]:** [More Information Needed]
|
| 28 |
+
|
| 29 |
+
### Model Sources [optional]
|
| 30 |
+
|
| 31 |
+
<!-- Provide the basic links for the model. -->
|
| 32 |
+
|
| 33 |
+
- **Repository:** https://github.com/CaicedoLab/CHAMMI-75
|
| 34 |
+
- **Paper [optional]:** [More Information Needed]
|
| 35 |
+
- **Demo [optional]:** [More Information Needed]
|
| 36 |
+
|
| 37 |
+
## Uses
|
| 38 |
+
|
| 39 |
+
<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
|
| 40 |
+
|
| 41 |
+
### Direct Use
|
| 42 |
+
|
| 43 |
+
<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
|
| 44 |
+
|
| 45 |
+
[More Information Needed]
|
| 46 |
+
|
| 47 |
+
### Downstream Use [optional]
|
| 48 |
+
|
| 49 |
+
<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
|
| 50 |
+
|
| 51 |
+
[More Information Needed]
|
| 52 |
+
|
| 53 |
+
### Out-of-Scope Use
|
| 54 |
+
|
| 55 |
+
<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
|
| 56 |
+
|
| 57 |
+
[More Information Needed]
|
| 58 |
+
|
| 59 |
+
## Bias, Risks, and Limitations
|
| 60 |
+
|
| 61 |
+
<!-- This section is meant to convey both technical and sociotechnical limitations. -->
|
| 62 |
+
|
| 63 |
+
[More Information Needed]
|
| 64 |
+
|
| 65 |
+
### Recommendations
|
| 66 |
+
|
| 67 |
+
<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
|
| 68 |
+
|
| 69 |
+
Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
|
| 70 |
+
|
| 71 |
+
## How to Get Started with the Model
|
| 72 |
+
|
| 73 |
+
Use the code below to get started with the model.
|
| 74 |
+
|
| 75 |
+
[More Information Needed]
|
| 76 |
+
|
| 77 |
+
## Training Details
|
| 78 |
+
|
| 79 |
+
### Training Data
|
| 80 |
+
|
| 81 |
+
<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
|
| 82 |
+
|
| 83 |
+
[More Information Needed]
|
| 84 |
+
|
| 85 |
+
### Training Procedure
|
| 86 |
+
|
| 87 |
+
We have utilized the DINO model.
|
| 88 |
+
|
| 89 |
+
#### Preprocessing [optional]
|
| 90 |
+
|
| 91 |
+
[More Information Needed]
|
| 92 |
+
|
| 93 |
+
|
| 94 |
+
#### Training Hyperparameters
|
| 95 |
+
|
| 96 |
+
- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
|
| 97 |
+
|
| 98 |
+
#### Speeds, Sizes, Times [optional]
|
| 99 |
+
|
| 100 |
+
<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
|
| 101 |
+
|
| 102 |
+
[More Information Needed]
|
| 103 |
+
|
| 104 |
+
## Evaluation
|
| 105 |
+
|
| 106 |
+
<!-- This section describes the evaluation protocols and provides the results. -->
|
| 107 |
+
|
| 108 |
+
### Testing Data, Factors & Metrics
|
| 109 |
+
|
| 110 |
+
#### Testing Data
|
| 111 |
+
|
| 112 |
+
<!-- This should link to a Dataset Card if possible. -->
|
| 113 |
+
|
| 114 |
+
[More Information Needed]
|
| 115 |
+
|
| 116 |
+
#### Factors
|
| 117 |
+
|
| 118 |
+
<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
|
| 119 |
+
|
| 120 |
+
[More Information Needed]
|
| 121 |
+
|
| 122 |
+
#### Metrics
|
| 123 |
+
|
| 124 |
+
<!-- These are the evaluation metrics being used, ideally with a description of why. -->
|
| 125 |
+
|
| 126 |
+
[More Information Needed]
|
| 127 |
+
|
| 128 |
+
### Results
|
| 129 |
+
|
| 130 |
+
[More Information Needed]
|
| 131 |
+
|
| 132 |
+
#### Summary
|
| 133 |
+
|
| 134 |
+
|
| 135 |
+
|
| 136 |
+
## Model Examination [optional]
|
| 137 |
+
|
| 138 |
+
<!-- Relevant interpretability work for the model goes here -->
|
| 139 |
+
|
| 140 |
+
[More Information Needed]
|
| 141 |
+
|
| 142 |
+
## Environmental Impact
|
| 143 |
+
|
| 144 |
+
<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
|
| 145 |
+
|
| 146 |
+
Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
|
| 147 |
+
|
| 148 |
+
- **Hardware Type:** Nvidia RTX A6000
|
| 149 |
+
- **Hours used:** 2500
|
| 150 |
+
- **Cloud Provider:** Private Infrastructure
|
| 151 |
+
- **Compute Region:** Private Infrastructure
|
| 152 |
+
- **Carbon Emitted:** 324 kg CO2
|
| 153 |
+
|
| 154 |
+
## Technical Specifications [optional]
|
| 155 |
+
|
| 156 |
+
### Model Architecture and Objective
|
| 157 |
+
|
| 158 |
+
The model is a ViT Small trained on 2500 Nvidia A6000 GPU hours.
|
| 159 |
+
|
| 160 |
+
### Compute Infrastructure
|
| 161 |
+
|
| 162 |
+
The model was trained on a multi-node system with 2 nodes, each containing 7 GPUs.
|
| 163 |
+
|
| 164 |
+
#### Hardware
|
| 165 |
+
|
| 166 |
+
[More Information Needed]
|
| 167 |
+
|
| 168 |
+
#### Software
|
| 169 |
+
|
| 170 |
+
[More Information Needed]
|
| 171 |
+
|
| 172 |
+
## Citation [optional]
|
| 173 |
+
|
| 174 |
+
<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
|
| 175 |
+
|
| 176 |
+
**BibTeX:**
|
| 177 |
+
|
| 178 |
+
[More Information Needed]
|
| 179 |
+
|
| 180 |
+
**APA:**
|
| 181 |
+
|
| 182 |
+
[More Information Needed]
|
| 183 |
+
|
| 184 |
+
## Glossary [optional]
|
| 185 |
+
|
| 186 |
+
<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
|
| 187 |
+
|
| 188 |
+
[More Information Needed]
|
| 189 |
+
|
| 190 |
+
## More Information [optional]
|
| 191 |
+
|
| 192 |
+
[More Information Needed]
|
| 193 |
+
|
| 194 |
+
## Model Card Authors [optional]
|
| 195 |
+
|
| 196 |
+
Vidit Agrawal, John Peters, Tyler N. Thompson, Mohammad Vali Sanian, Chau Pham, Nikita Moshkov, Arshad Kazi, Aditya Pillai, Jack Freeman, Byunguk Kang, Samouil L. Farhi, Ernest Fraenkel, Ron M. Stewart, Lassi Paavolainen, Bryan A. Plummer, Juan C. Caicedo
|
| 197 |
+
|
| 198 |
+
## Model Card Contact
|
| 199 |
+
|
| 200 |
+
vagrawal22@wisc.edu, juan.caicedo@wisc.edu
|