This directory holds functions for downloading raw data needed to train the binding site predictor (classifier) on processed ChIP-seq peaks. 

## Human genome
`genome.py`
* Download the sequences of all chromosomes from a certain genome (e.g. hg38, used for this project)
* Configurations associated with this download can be found in `./configs/data_task/download/genome.yaml`

### Running the download 
To run this download, please change directory to `DPACMAN/dpacman` and run:

```
python -u -m scripts.preprocess data_task=download/genome
```

## ReMap 2022
`remap.py`
* Download non-redundant peaks: `remap2022_nr_macs2_hg38_v1_0.bed`
* Download cis-regulatory modules (CRMS): `remap2022_crm_macs2_hg38_v1_0.bed`
* Configurations associated with this download can be found in `./configs/data_task/download/remap.yaml`

### Running the download 
To run this download, please change directory to `DPACMAN/dpacman` and run:

```
python -u -m scripts.preprocess data_task=download/remap
```