[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "pivot-transcriptomics"
version = "0.2.0"
description = "Perturbation-informed endpoint maps for transcriptomic state control"
readme = "README.md"
requires-python = ">=3.11,<3.14"
license = {file = "LICENSE"}
dependencies = ["numpy>=1.26,<3", "scipy>=1.12,<2", "pandas>=2.1,<4", "scikit-learn>=1.5,<2", "torch>=2.2,<3", "anndata>=0.10,<0.14", "scanpy>=1.10,<1.13", "pyarrow>=15", "matplotlib>=3.8,<4", "requests>=2.31"]

[project.optional-dependencies]
test = ["pytest>=8"]
hub = ["huggingface-hub>=0.27"]

[project.scripts]
pivot = "pivot.cli:main"

[tool.setuptools.packages.find]
where = ["src"]

[tool.pytest.ini_options]
testpaths = ["tests"]