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PepPA

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PepPA
File size: 1,742 Bytes
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{
  "episode_id": "real_data_replay",
  "task": "binding",
  "objective": "Reconstruct one observed SNOOPPI interaction with dataset source records.",
  "targets": [
    {
      "id": "snooppi_partner",
      "accession": "SNOOPPI_partner_00202528",
      "molecule": {
        "sequence": "MKWVTFISLLLLFSSAYSRGVFRRDTHKSEIAHRFKDLGEEHFKGLVLIAFSQYLQQCPFDEHVKLVNELTEFAKTCVADESHAGCEKSLHTLFGDELCKVASLRETYGDMADCCEKQEPERNECFLSHKDDSPDLPKLKPDPNTLCDEFKADEKKFWGKYLYEIARRHPYFYAPELLYYANKYNGVFQECCQAEDKGACLLPKIETMREKVLASSARQRLRCASIQKFGERALKAWSVARLSQKFPKAEFVEVTKLVTDLTKVHKECCHGDLLECADDRADLAKYICDNQDTISSKLKECCDKPLLEKSHCIAEVEKDAIPENLPPLTADFAEDKDVCKNYQEAKDAFLGSFLYEYSRRHPEYAVSVLLRLAKEYEATLEECCAKDDPHACYSTVFDKLKHLVDEPQNLIKQNCDQFEKLGEYGFQNALIVRYTRKVPQVSTPTLVEVSRSLGKVGTRCCTKPESERMPCTEDYLSLILNRLCVLHEKTPVSEKVTKCCTESLVNRRPCFSALTPDETYVPKAFDEKLFTFHADICTLPDTEKQIKKQTALVELLKHKPKATEEQLKTVMENFVAFVDKCCAADDKEACFAVEGPKLVVSTQTALA",
        "modifications": [],
        "bonds": [],
        "n_terminus": "free",
        "c_terminus": "free",
        "smiles": null
      },
      "species": "Homo sapiens",
      "compartment": "source annotation",
      "structure_paths": [],
      "construct_start": 1
    }
  ],
  "countertargets": [],
  "requirements": [
    {
      "endpoint": "observed_interaction",
      "unit": "binary_label",
      "direction": "ge",
      "threshold": 1.0,
      "assay": "SNOOPPI_curated",
      "scale": 1.0,
      "required": true
    }
  ],
  "administration": "retrospective dataset example",
  "peptide_format": "linear",
  "sequence_lengths": [
    30
  ],
  "budgets": {
    "tool_calls": 64.0,
    "gpu_minutes": 480.0,
    "controller_calls": 40.0,
    "controller_tokens": 128000.0,
    "synthesis_slots": 24.0
  },
  "seed": 2027
}