File size: 5,707 Bytes
f4e8048 | 1 2 3 4 5 6 7 8 | case tm_score_avg tm_rmsd_aligned aligned_len n_common_core n_switch_3A n_switch_2A common_core_residues switch_region_3A_residues switch_region_2A_residues method_note
KaiB 0.47887 3.86 66 27 30 38 8,10,11,12,13,18,22,25,29,30,31,32,34,35,36,37,38,39,40,45,46,47,48,49,50,51,73 6,7,8,9,19,20,23,24,34,46,51,52,53,54,57,58,59,60,61,62,63,64,65,66,67,70,71,72,74,75 6,7,8,9,14,15,16,17,19,20,21,23,24,27,34,41,42,46,51,52,53,54,57,58,59,60,61,62,63,64,65,66,67,70,71,72,74,75 TM-align v20220412 superposition; DSSP=mkdssp; common_core threshold=1.5A, terminal trim=10res>3A; switch_3A=disp>=3A or SS(H/E/C) flip; switch_2A=disp>=2A or flip.
GA_GB_GA98_vs_GB98 0.34916 2.76 34 11 20 21 31,35,36,38,39,40,43,44,45,47,49 9,10,13,16,17,20,21,22,23,24,25,27,29,31,32,35,39,51,52,53 9,10,13,16,17,20,21,22,23,24,25,27,29,31,32,35,39,48,51,52,53 TM-align v20220412 superposition; DSSP=mkdssp; common_core threshold=1.5A, terminal trim=10res>3A; switch_3A=disp>=3A or SS(H/E/C) flip; switch_2A=disp>=2A or flip.
Mpt53 NA NA 134 134 NA NA 38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171 NA NA Discovery case: only 1LU4 reference. common_core = all CA-resolved residues of 1LU4 chain A, renumbered into UniProt P9WG65 frame (crystal resnum - 963 -> 38..171).
Mpt53_vs_3EMX_info 0.630745 2.82 103 47 46 56 1019,1027,1028,1029,1030,1031,1032,1033,1034,1036,1037,1038,1039,1040,1041,1042,1043,1044,1045,1046,1047,1048,1049,1050,1051,1053,1056,1057,1058,1059,1060,1061,1094,1100,1101,1102,1103,1104,1105,1113,1126,1127,1128,1129,1130,1131,1132 1009,1010,1011,1012,1013,1014,1015,1016,1017,1018,1019,1020,1021,1022,1023,1026,1032,1033,1052,1056,1057,1058,1059,1060,1061,1062,1066,1067,1085,1086,1087,1088,1089,1091,1092,1096,1098,1108,1109,1111,1112,1113,1114,1115,1116,1117 1009,1010,1011,1012,1013,1014,1015,1016,1017,1018,1019,1020,1021,1022,1023,1024,1026,1032,1033,1035,1052,1055,1056,1057,1058,1059,1060,1061,1062,1066,1067,1085,1086,1087,1088,1089,1091,1092,1093,1095,1096,1097,1098,1099,1107,1108,1109,1110,1111,1112,1113,1114,1115,1116,1117,1123 TM-align v20220412 superposition; DSSP=mkdssp; common_core threshold=1.5A, terminal trim=10res>3A; switch_3A=disp>=3A or SS(H/E/C) flip; switch_2A=disp>=2A or flip.
RfaH NA NA 134 134 131 131 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154 from_residue_mapping_tsv
MAD2 NA NA 187 187 147 147 10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,124,125,126,127,128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196 10,11,12,13,14,15,16,24,25,28,29,30,31,32,33,34,35,36,37,38,39,40,43,44,45,46,47,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196 10,11,12,13,14,15,16,24,25,28,29,30,31,32,33,34,35,36,37,38,39,40,43,44,45,46,47,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,111,112,113,114,115,116,117,118,119,120,121,122,123,141,142,143,144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,160,161,162,163,164,165,166,167,168,170,171,172,173,174,175,176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,192,193,194,195,196 from_residue_mapping_tsv
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