Update README.md
Browse files
README.md
CHANGED
|
@@ -11,9 +11,8 @@ tags:
|
|
| 11 |
|
| 12 |

|
| 13 |
|
| 14 |
-
**Research code accompanying the TRACE ICLR 2027 submission.**
|
| 15 |
|
| 16 |
-
TRACE
|
| 17 |
|
| 18 |
This is an **initial code-only release**. Input matrices, frozen TF-target prior, pretrained weights, and third-party benchmark implementations are not included.
|
| 19 |
|
|
@@ -74,6 +73,6 @@ The runner produces fold-level results, mean ± population-SD summaries, and TF
|
|
| 74 |
- `benchmark_table.ot_plan()` attempts exact EMD but has an approximate fallback if EMD fails. Confirm whether the fallback was triggered in archived paper runs before claiming exact reproduction.
|
| 75 |
- This release does not yet reproduce all manuscript components (Slingshot curvature, external method baselines, interpolation-family ablations, or saved checkpoints).
|
| 76 |
|
| 77 |
-
##
|
| 78 |
|
| 79 |
The present Hub metadata retains the repository's CC BY-NC-ND 4.0 designation, which restricts derivative works and may not be the desired license for software; confirm the final code license with the lab before public release.
|
|
|
|
| 11 |
|
| 12 |

|
| 13 |
|
|
|
|
| 14 |
|
| 15 |
+
TRACE modulates the reference path of temporal single-cell conditional flow matching using transcription-factor regulon derivatives. It first couples retained population snapshots with balanced optimal transport, constructs PCHIP/Hermite reference paths, maps regulon activity derivatives into PCA coordinates with a ridge fit \(Z pprox AW+b\), calibrates their norms, and blends the mapped tangents with geometric PCHIP tangents before shape-preserving projection.
|
| 16 |
|
| 17 |
This is an **initial code-only release**. Input matrices, frozen TF-target prior, pretrained weights, and third-party benchmark implementations are not included.
|
| 18 |
|
|
|
|
| 73 |
- `benchmark_table.ot_plan()` attempts exact EMD but has an approximate fallback if EMD fails. Confirm whether the fallback was triggered in archived paper runs before claiming exact reproduction.
|
| 74 |
- This release does not yet reproduce all manuscript components (Slingshot curvature, external method baselines, interpolation-family ablations, or saved checkpoints).
|
| 75 |
|
| 76 |
+
## Licensing
|
| 77 |
|
| 78 |
The present Hub metadata retains the repository's CC BY-NC-ND 4.0 designation, which restricts derivative works and may not be the desired license for software; confirm the final code license with the lab before public release.
|