#!/bin/bash #SBATCH -o ../watch_folder/%x_%j.out # output file (%j expands to jobID) #SBATCH -N 1 # Total number of nodes requested #SBATCH --get-user-env # retrieve the users login environment #SBATCH --mem=64000 # server memory requested (per node) #SBATCH -t 960:00:00 # Time limit (hh:mm:ss) #SBATCH --constraint="[a100|a6000|a5000|3090]" #SBATCH --ntasks-per-node=4 #SBATCH --gres=gpu:4 # Type/number of GPUs needed #SBATCH --open-mode=append # Do not overwrite logs #SBATCH --requeue # Requeue upon preemption < sbatch \ --export=ALL,MODEL=${MODEL} \ --job-name=train_ten_species_guidance_${MODEL} \ train_ten_species_guidance.sh comment # Setup environment cd ../ || exit # Go to the root directory of the repo source setup_env.sh export NCCL_P2P_LEVEL=NVL export HYDRA_FULL_ERROR=1 # Expecting: # - MODEL (ar, mdlm, udlm) if [ -z "${MODEL}" ]; then echo "MODEL is not set" exit 1 fi if [ -z "${USE_SIMPLE_CE_LOSS}" ]; then USE_SIMPLE_CE_LOSS=False fi RUN_NAME="${MODEL}" if [ "${USE_SIMPLE_CE_LOSS}" = "True" ]; then RUN_NAME="${RUN_NAME}_simple-ce" fi if [ "${MODEL}" = "ar" ]; then # AR DIFFUSION="absorbing_state" PARAMETERIZATION="ar" T=0 TIME_COND=False ZERO_RECON_LOSS=False BIDIRECTIONAL=False BIDIRECTIONAL_STRATEGY=null BIDIRECTIONAL_WEIGHT_TIE=null elif [ "${MODEL}" = "mdlm" ]; then # MDLM DIFFUSION="absorbing_state" PARAMETERIZATION="subs" T=0 TIME_COND=False ZERO_RECON_LOSS=False BIDIRECTIONAL=True BIDIRECTIONAL_STRATEGY=add BIDIRECTIONAL_WEIGHT_TIE=True elif [ "${MODEL}" = "udlm" ]; then # UDLM DIFFUSION="uniform" PARAMETERIZATION="d3pm" T=0 TIME_COND=True ZERO_RECON_LOSS=True BIDIRECTIONAL=True BIDIRECTIONAL_STRATEGY=add BIDIRECTIONAL_WEIGHT_TIE=True else echo "MODEL must be one of ar, mdlm, udlm" exit 1 fi # To enable preemption re-loading, set `hydra.run.dir` or srun python -u -m main \ diffusion=${DIFFUSION} \ parameterization=${PARAMETERIZATION} \ T=${T} \ time_conditioning=${TIME_COND} \ zero_recon_loss=${ZERO_RECON_LOSS} \ data=ten_species \ eval.generate_samples=False \ loader.global_batch_size=32 \ loader.eval_global_batch_size=64 \ loader.batch_size=2 \ backbone=dimamba \ model=dimamba \ model.bidirectional=${BIDIRECTIONAL} \ model.bidirectional_strategy=${BIDIRECTIONAL_STRATEGY} \ model.bidirectional_weight_tie=${BIDIRECTIONAL_WEIGHT_TIE} \ model.length=32768 \ optim.lr=2e-3 \ lr_scheduler=cosine_decay_warmup \ lr_scheduler.warmup_t=3000 \ lr_scheduler.lr_min=2e-6 \ training.guidance.cond_dropout=0.1 \ training.compute_loss_on_pad_tokens=False \ training.use_simple_ce_loss=${USE_SIMPLE_CE_LOSS} \ callbacks.checkpoint_every_n_steps.every_n_train_steps=6_000 \ trainer.max_steps=30_000 \ trainer.val_check_interval=3_000 \ wandb.name="ten_species_${RUN_NAME}" \ hydra.run.dir="./outputs/ten_species/${RUN_NAME}"