#!/bin/bash #SBATCH -o ../watch_folder/%x_%j.out # output file (%j expands to jobID) #SBATCH -N 1 # Total number of nodes requested #SBATCH --get-user-env # retrieve the users login environment #SBATCH --mem=64000 # server memory requested (per node) #SBATCH -t 960:00:00 # Time limit (hh:mm:ss) #SBATCH --constraint="[a100|a6000|a5000|3090]" #SBATCH --ntasks-per-node=4 #SBATCH --gres=gpu:4 # Type/number of GPUs needed #SBATCH --open-mode=append # Do not overwrite logs #SBATCH --requeue # Requeue upon preemption < sbatch \ --export=ALL,MODEL=${MODEL} \ --job-name=train_ten_species_pplm_classifier_${MODEL} \ train_ten_species_pplm_classifier.sh comment # Setup environment cd ../ || exit # Go to the root directory of the repo source setup_env.sh export HYDRA_FULL_ERROR=1 export NCCL_P2P_LEVEL=NVL # Expecting: # - MODEL (ar, mdlm, or udlm) if [ -z "${MODEL}" ]; then echo "MODEL is not set" exit 1 fi LABEL_SMOOTHING=FALSE RUN_NAME="${MODEL}_lr-2e-3" if [ "${MODEL}" = "ar" ]; then # AR PARAMETERIZATION="ar" PRETRAINED_PATH="${PWD}/outputs/ten_species/${MODEL}_no-guidance/checkpoints/best.ckpt" POOLING="attention_mean" # dummy properties DIFFUSION="absorbing_state" T=0 TIME_COND=False BIDIRECTIONAL=False BIDIRECTIONAL_STRATEGY=null BIDIRECTIONAL_WEIGHT_TIE=null elif [ "${MODEL}" = "mdlm" ]; then # MDLM DIFFUSION="absorbing_state" PARAMETERIZATION="subs" T=0 TIME_COND=False PRETRAINED_PATH="${PWD}/outputs/ten_species/${MODEL}_no-guidance/checkpoints/best.ckpt" POOLING="mean" BIDIRECTIONAL=True BIDIRECTIONAL_STRATEGY=add BIDIRECTIONAL_WEIGHT_TIE=True elif [ "${MODEL}" = "udlm" ]; then # UDLM DIFFUSION="uniform" PARAMETERIZATION="d3pm" T=0 TIME_COND=True PRETRAINED_PATH="${PWD}/outputs/ten_species/${MODEL}_no-guidance/checkpoints/best.ckpt" POOLING="mean" BIDIRECTIONAL=True BIDIRECTIONAL_STRATEGY=add BIDIRECTIONAL_WEIGHT_TIE=True else echo "MODEL must be one of ar, mdlm, udlm" exit 1 fi # To enable preemption re-loading, set `hydra.run.dir` or srun python -u -m main \ mode=train_classifier \ +is_pplm_classifier=True \ +use_label_smoothing=${LABEL_SMOOTHING} \ eval.checkpoint_path="${PRETRAINED_PATH}" \ parameterization=${PARAMETERIZATION} \ time_conditioning=${TIME_COND} \ diffusion=${DIFFUSION} \ T=${T} \ data=ten_species \ loader.global_batch_size=32 \ loader.eval_global_batch_size=64 \ model=dimamba \ backbone=dimamba \ model.bidirectional=${BIDIRECTIONAL} \ model.bidirectional_strategy=${BIDIRECTIONAL_STRATEGY} \ model.bidirectional_weight_tie=${BIDIRECTIONAL_WEIGHT_TIE} \ model.length=32768 \ classifier_model=dimamba-classifier \ classifier_backbone=dimamba \ classifier_model.pooling=${POOLING} \ classifier_model.bidirectional=${BIDIRECTIONAL} \ classifier_model.bidirectional_strategy=${BIDIRECTIONAL_STRATEGY} \ classifier_model.bidirectional_weight_tie=${BIDIRECTIONAL_WEIGHT_TIE} \ +classifier_model.freeze_encoder=True \ +classifier_model.use_encoder_ema=True \ optim.lr=2e-3 \ lr_scheduler=cosine_decay_warmup \ lr_scheduler.warmup_t=3000 \ lr_scheduler.lr_min=2e-6 \ training.guidance=null \ +training.use_label_smoothing=${LABEL_SMOOTHING} \ callbacks.checkpoint_every_n_steps.every_n_train_steps=6_000 \ callbacks.checkpoint_monitor.monitor=val/cross_entropy \ trainer.val_check_interval=3_000 \ trainer.max_steps=30_000 \ wandb.group=train_classifier \ wandb.name="ten_species-pplm_classifier_${RUN_NAME}" \ hydra.run.dir="./outputs/ten_species/pplm_classifier/${RUN_NAME}"