AlienChen commited on
Commit
a33cd10
·
verified ·
1 Parent(s): 9fdebfd

Update moppit.py

Browse files
Files changed (1) hide show
  1. moppit.py +3 -3
moppit.py CHANGED
@@ -25,7 +25,7 @@ tokenizer = AutoTokenizer.from_pretrained("facebook/esm2_t33_650M_UR50D")
25
  target_sequence = tokenizer(target, return_tensors='pt')['input_ids'].to(device)
26
 
27
  # Load Models
28
- solver = load_solver('/scratch/pranamlab/tong/checkpoints/MOG-DFM/ckpt/peptide/cnn_epoch200_lr0.0001_embed512_hidden256_loss3.1051.ckpt', vocab_size, device)
29
 
30
  score_models = []
31
  if 'Hemolysis' in args.objectives:
@@ -41,11 +41,11 @@ if 'Half-Life' in args.objectives:
41
  halflife_model = HalfLifeModel(device=device)
42
  score_models.append(halflife_model)
43
  if 'Affinity' in args.objectives:
44
- affinity_predictor = load_affinity_predictor('/scratch/pranamlab/tong/checkpoints/MOG-DFM/classifier_ckpt/binding_affinity_unpooled.pt', device)
45
  affinity_model = AffinityModel(affinity_predictor, target_sequence)
46
  score_models.append(affinity_model)
47
  if 'Motif' in args.objectives or 'Specificity' in args.objectives:
48
- bindevaluator = load_bindevaluator('/scratch/pranamlab/tong/checkpoints/BindEvaluator/model_path/finetuned_BindEvaluator.ckpt', device)
49
  if 'Specificity' in args.objectives:
50
  motif_penalty = True
51
  else:
 
25
  target_sequence = tokenizer(target, return_tensors='pt')['input_ids'].to(device)
26
 
27
  # Load Models
28
+ solver = load_solver('./ckpt/peptide/cnn_epoch200_lr0.0001_embed512_hidden256_loss3.1051.ckpt', vocab_size, device)
29
 
30
  score_models = []
31
  if 'Hemolysis' in args.objectives:
 
41
  halflife_model = HalfLifeModel(device=device)
42
  score_models.append(halflife_model)
43
  if 'Affinity' in args.objectives:
44
+ affinity_predictor = load_affinity_predictor('./classifier_ckpt/binding_affinity_unpooled.pt', device)
45
  affinity_model = AffinityModel(affinity_predictor, target_sequence)
46
  score_models.append(affinity_model)
47
  if 'Motif' in args.objectives or 'Specificity' in args.objectives:
48
+ bindevaluator = load_bindevaluator('./classifier_ckpt/finetuned_BindEvaluator.ckpt', device)
49
  if 'Specificity' in args.objectives:
50
  motif_penalty = True
51
  else: