File size: 532 Bytes
6c41692 0dc829a 6c41692 0dc829a 6c41692 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | set -e
echo "Start post-process masks"
python p_processing.py \
--input_dir ./nnUNet_predictions \
--output_dir ./nnUNet_predictions \
--rules "6:1,7:2|3,8:4,9:5" \
--keep_mode any \
--target_labels "6,7,8,9" \
--min_size 25 \
--dilation_iters 1 \
--connectivity 26 \
--num_workers 16
echo "Post-processing finished"
echo "Start organize into BDMAP format"
python masks_BDMAP.py \
--source_dir ./nnUNet_predictions \
--output_dir ./nnUNet_predictions_BDMAP
echo "Organization finished" |