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README.md
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# S-Proto: Sparse Prototypical Networks for Long-Tail Clinical Diagnosis Prediction
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This repository provides **S-Proto**, a sparse and interpretable prototypical network for extreme multi-label diagnosis prediction from clinical text. The model is designed to address the long-tail distribution of clinical diagnoses while preserving faithful, prototype-based explanations.
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S-Proto was introduced in the paper:
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**[Boosting Long-Tail Data Classification with Sparse Prototypical Networks](https://ecmlpkdd-storage.s3.eu-central-1.amazonaws.com/preprints/2024/lncs14947/lncs14947435.pdf)**
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Alexei Figueroa*, Jens-Michalis Papaioannou*, et al.
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DATEXIS, Berliner Hochschule für Technik, Feinstein Institutes, TU Munich, Leibniz University Hannover
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(* equal contribution)
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@inproceedings{figueroa2024sproto,
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title={Boosting Long-Tail Data Classification with Sparse Prototypical Networks},
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author={Figueroa, Alexei and Papaioannou, Jens-Michalis and Fallon, Conor and Bekiaridou, Alexandra and Bressem, Keno and Zanos, Stavros and Gers, Felix and Nejdl, Wolfgang and Löser, Alexander},
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booktitle={Proceedings of the Conference on
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year={2024}
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}
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```
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# S-Proto: Sparse Prototypical Networks for Long-Tail Clinical Diagnosis Prediction
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**Published at ECML PKDD 2024 (CORE A)**
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*Boosting Long-Tail Data Classification with Sparse Prototypical Networks*
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Alexei Figueroa*, Jens-Michalis Papaioannou*, et al.
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DATEXIS, Berliner Hochschule für Technik, Feinstein Institutes, TU Munich, Leibniz University Hannover
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(* equal contribution)
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This repository provides **S-Proto**, a sparse and interpretable prototypical network for extreme multi-label diagnosis prediction from clinical text. The model is designed to address the long-tail distribution of clinical diagnoses while preserving faithful, prototype-based explanations.
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S-Proto was introduced in the paper:
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**[Boosting Long-Tail Data Classification with Sparse Prototypical Networks](https://ecmlpkdd-storage.s3.eu-central-1.amazonaws.com/preprints/2024/lncs14947/lncs14947435.pdf)**
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European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD 2024, CORE A)
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Alexei Figueroa*, Jens-Michalis Papaioannou*, et al.
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DATEXIS, Berliner Hochschule für Technik, Feinstein Institutes, TU Munich, Leibniz University Hannover
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(* equal contribution)
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@inproceedings{figueroa2024sproto,
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title={Boosting Long-Tail Data Classification with Sparse Prototypical Networks},
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author={Figueroa, Alexei and Papaioannou, Jens-Michalis and Fallon, Conor and Bekiaridou, Alexandra and Bressem, Keno and Zanos, Stavros and Gers, Felix and Nejdl, Wolfgang and Löser, Alexander},
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booktitle={Proceedings of the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD)},
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year={2024}
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}
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```
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