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  # Overview
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  This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
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- > **Visit https://github.com/discostudy/phenogemini
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- > for additional usage examples and demonstration data derived from real-world cohorts.**
 
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  # Step 1: Generate Prompt
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  Use `PhenoGemini Atlas` (https://phenogemini.org/) to create a prompt that includes "twin patients". After you input the patient's phenotypes, the Atlas retrieves the most similar patients from the literature and appends them to the final prompt.
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  # Step 2: Inference
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- > [!important]
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  > Because PhenoGemini-LLM performs ranking based on the token predicted at the final position,
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  > please ensure that **the prompt passed to the LLM does NOT contain any trailing spaces, newline characters, or other extraneous whitespace AT THE END**.
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  # Overview
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  This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
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+ > [!NOTE]
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+ > Visit `https://github.com/discostudy/phenogemini`
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+ > for additional usage examples and demonstration data derived from real-world cohorts.
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  # Step 1: Generate Prompt
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  Use `PhenoGemini Atlas` (https://phenogemini.org/) to create a prompt that includes "twin patients". After you input the patient's phenotypes, the Atlas retrieves the most similar patients from the literature and appends them to the final prompt.
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  # Step 2: Inference
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+ > [!IMPORTANT]
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  > Because PhenoGemini-LLM performs ranking based on the token predicted at the final position,
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  > please ensure that **the prompt passed to the LLM does NOT contain any trailing spaces, newline characters, or other extraneous whitespace AT THE END**.
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