Update README.md
Browse files
README.md
CHANGED
|
@@ -19,14 +19,15 @@ extra_gated_fields:
|
|
| 19 |
# Overview
|
| 20 |
This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
|
| 21 |
|
| 22 |
-
>
|
| 23 |
-
>
|
|
|
|
| 24 |
|
| 25 |
# Step 1: Generate Prompt
|
| 26 |
Use `PhenoGemini Atlas` (https://phenogemini.org/) to create a prompt that includes "twin patients". After you input the patient's phenotypes, the Atlas retrieves the most similar patients from the literature and appends them to the final prompt.
|
| 27 |
|
| 28 |
# Step 2: Inference
|
| 29 |
-
> [!
|
| 30 |
> Because PhenoGemini-LLM performs ranking based on the token predicted at the final position,
|
| 31 |
> please ensure that **the prompt passed to the LLM does NOT contain any trailing spaces, newline characters, or other extraneous whitespace AT THE END**.
|
| 32 |
|
|
|
|
| 19 |
# Overview
|
| 20 |
This model ranks candidate disease-causing genes based on a patient’s phenotypic information. During inference, it does not generate a full free-text response. Instead, it performs gene-token subspace ranking on the logits at the final position and outputs a prioritized list of genes.
|
| 21 |
|
| 22 |
+
> [!NOTE]
|
| 23 |
+
> Visit `https://github.com/discostudy/phenogemini`
|
| 24 |
+
> for additional usage examples and demonstration data derived from real-world cohorts.
|
| 25 |
|
| 26 |
# Step 1: Generate Prompt
|
| 27 |
Use `PhenoGemini Atlas` (https://phenogemini.org/) to create a prompt that includes "twin patients". After you input the patient's phenotypes, the Atlas retrieves the most similar patients from the literature and appends them to the final prompt.
|
| 28 |
|
| 29 |
# Step 2: Inference
|
| 30 |
+
> [!IMPORTANT]
|
| 31 |
> Because PhenoGemini-LLM performs ranking based on the token predicted at the final position,
|
| 32 |
> please ensure that **the prompt passed to the LLM does NOT contain any trailing spaces, newline characters, or other extraneous whitespace AT THE END**.
|
| 33 |
|