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Browse files- README.md +85 -0
- mpknet_components.py +397 -0
- mpknet_v6.py +207 -0
- v6_kvasir_best.pth +3 -0
README.md
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---
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license: other
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license_name: polyform-small-business-1.0.0
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license_link: https://polyformproject.org/licenses/small-business/1.0.0/
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library_name: pytorch
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pipeline_tag: image-classification
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tags:
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- bio-inspired
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- neuroscience
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- lightweight
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- medical-imaging
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- edge-ai
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- retinal-ganglion-cells
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- fibonacci-strides
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datasets:
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- kvasir-v2
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- cifar-10
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- cifar-100
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- imagenet-100
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---
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# MPKNet V6 - Bio-Inspired Visual Classification
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A lightweight neural network inspired by the primate Lateral Geniculate Nucleus (LGN), implementing parallel **Parvocellular (P)**, **Koniocellular (K)**, and **Magnocellular (M)** pathways with Fibonacci-stride spatial sampling.
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## Architecture
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MPKNet V6 uses three parallel pathways with biologically-motivated stride ratios (2:3:5):
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- **P pathway** (stride 2): Fine detail and edges, analogous to Parvocellular neurons (~80% of LGN)
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- **K pathway** (stride 3): Context signals that generate gating modulation, analogous to Koniocellular neurons (~10% of LGN)
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- **M pathway** (stride 5): Global structure and coarse features, analogous to Magnocellular neurons (~10% of LGN)
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The **K-gating mechanism** dynamically modulates P and M pathways via learned sigmoid gates, inspired by cross-stream modulation in biological vision.
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## Results
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| Dataset | Classes | Accuracy | Parameters |
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|---------|---------|----------|------------|
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| Kvasir-v2 (GI endoscopy) | 8 | 89.2% | 0.21M |
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| CIFAR-10 | 10 | 89.4% | 0.54M |
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| CIFAR-100 | 100 | 58.8% | 0.22M |
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| ImageNet-100 | 100 | 60.8% | 0.54M |
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No pretraining. No augmentation. 161x fewer parameters than MobileNetV3-Small.
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## Usage
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```python
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import torch
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from mpknet_v6 import BinocularMPKNetV6
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from mpknet_components import count_params
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# Load model
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model = BinocularMPKNetV6(num_classes=8, ch=48, use_stereo=True)
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state_dict = torch.load("v6_kvasir_best.pth", map_location="cpu", weights_only=True)
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model.load_state_dict(state_dict)
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model.eval()
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# Inference
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x = torch.randn(1, 3, 224, 224)
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with torch.no_grad():
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logits = model(x)
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pred = logits.argmax(dim=1)
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```
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## Files
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- `v6_kvasir_best.pth` - Trained weights (Kvasir-v2, 8 classes, 2.1MB)
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- `mpknet_v6.py` - Model architecture
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- `mpknet_components.py` - Shared components (RGCLayer, BinocularPreMPK, StereoDisparity, StridedMonocularBlock)
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## Citation
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```
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D.J. Lougen, "MPKNet: Bio-Inspired Visual Classification with Parallel LGN Pathways", 2025.
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```
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## License
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PolyForm Small Business License 1.0.0 - Free for organizations with less than $100K revenue, non-profits, and education.
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## Links
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- [GitHub](https://github.com/DJLougen/MPKnet)
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mpknet_components.py
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"""
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| 2 |
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Shared components for all MPKNet model variants.
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| 3 |
+
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| 4 |
+
Contains building blocks used across V1, V2, V3, V4 and detection models:
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| 5 |
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- RGCLayer: Biologically accurate retinal ganglion cell preprocessing
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| 6 |
+
- BinocularPreMPK: Legacy retinal preprocessing (deprecated, use RGCLayer)
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| 7 |
+
- StereoDisparity: Stereo disparity simulation
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| 8 |
+
- OcularDominanceConv: Convolution with ocular dominance channels
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| 9 |
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- BinocularMPKPathway: Pathway with binocular processing
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| 10 |
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- MonocularPathwayBlock: Pathway keeping eyes separate
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| 11 |
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- StridedMonocularBlock: Strided pathway for V4
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"""
|
| 13 |
+
|
| 14 |
+
import torch
|
| 15 |
+
import torch.nn as nn
|
| 16 |
+
import torch.nn.functional as F
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| 17 |
+
from typing import Tuple
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| 18 |
+
|
| 19 |
+
|
| 20 |
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class RGCLayer(nn.Module):
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| 21 |
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"""
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Biologically accurate Retinal Ganglion Cell layer.
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+
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Based on Kim et al. 2021 "Retinal Ganglion Cells—Diversity of Cell Types
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| 25 |
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and Clinical Relevance" (Front. Neurol. 12:661938).
|
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+
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| 27 |
+
Models three main RGC types that feed the P/K/M pathways:
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+
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1. MIDGET RGCs (~70% of RGCs):
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- Small receptive field (5-10 μm dendritic field)
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| 31 |
+
- Center-surround via Difference of Gaussians (DoG)
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| 32 |
+
- Red-Green color opponency (L-M or M-L)
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| 33 |
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- Feeds PARVOCELLULAR (P) pathway
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| 34 |
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- High spatial acuity, low temporal resolution
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| 35 |
+
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| 36 |
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2. PARASOL RGCs (~10% of RGCs):
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| 37 |
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- Large receptive field (30-300 μm dendritic field)
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| 38 |
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- Center-surround DoG on luminance
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- Achromatic (no color, L+M pooled)
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| 40 |
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- Feeds MAGNOCELLULAR (M) pathway
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- Motion detection, high temporal resolution
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| 43 |
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3. SMALL BISTRATIFIED RGCs (~5-8% of RGCs):
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- Medium receptive field
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- S-cone ON center, (L+M) OFF surround
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- Blue-Yellow opponency
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- Feeds KONIOCELLULAR (K) pathway
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- Color context, particularly blue
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| 50 |
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Key biological details implemented:
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| 51 |
+
- DoG (Difference of Gaussians) for center-surround RF
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| 52 |
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- RF size ratios: Midget < Bistratified < Parasol
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| 53 |
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- Surround ~3-6x larger than center (we use 3x)
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| 54 |
+
- ON-center and OFF-center populations (we use ON-center)
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| 55 |
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"""
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| 56 |
+
|
| 57 |
+
def __init__(
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| 58 |
+
self,
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| 59 |
+
midget_sigma: float = 0.8, # Small RF for fine detail
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| 60 |
+
parasol_sigma: float = 2.5, # Large RF for motion/gist
|
| 61 |
+
bistrat_sigma: float = 1.2, # Medium RF for color context
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| 62 |
+
surround_ratio: float = 3.0, # Surround is 3x center
|
| 63 |
+
):
|
| 64 |
+
super().__init__()
|
| 65 |
+
|
| 66 |
+
self.midget_sigma = midget_sigma
|
| 67 |
+
self.parasol_sigma = parasol_sigma
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| 68 |
+
self.bistrat_sigma = bistrat_sigma
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| 69 |
+
self.surround_ratio = surround_ratio
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| 70 |
+
|
| 71 |
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# Create DoG kernels for each cell type
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| 72 |
+
self.register_buffer('midget_center', self._make_gaussian(midget_sigma))
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| 73 |
+
self.register_buffer('midget_surround', self._make_gaussian(midget_sigma * surround_ratio))
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| 74 |
+
|
| 75 |
+
self.register_buffer('parasol_center', self._make_gaussian(parasol_sigma))
|
| 76 |
+
self.register_buffer('parasol_surround', self._make_gaussian(parasol_sigma * surround_ratio))
|
| 77 |
+
|
| 78 |
+
self.register_buffer('bistrat_center', self._make_gaussian(bistrat_sigma))
|
| 79 |
+
self.register_buffer('bistrat_surround', self._make_gaussian(bistrat_sigma * surround_ratio))
|
| 80 |
+
|
| 81 |
+
# Store kernel sizes for padding calculation
|
| 82 |
+
self.midget_ks = self.midget_surround.shape[-1]
|
| 83 |
+
self.parasol_ks = self.parasol_surround.shape[-1]
|
| 84 |
+
self.bistrat_ks = self.bistrat_surround.shape[-1]
|
| 85 |
+
|
| 86 |
+
def _make_gaussian(self, sigma: float) -> torch.Tensor:
|
| 87 |
+
"""Create a normalized 2D Gaussian kernel."""
|
| 88 |
+
ks = int(6 * sigma + 1) | 1 # Ensure odd, cover 3 sigma each side
|
| 89 |
+
ax = torch.arange(ks, dtype=torch.float32) - ks // 2
|
| 90 |
+
xx, yy = torch.meshgrid(ax, ax, indexing='ij')
|
| 91 |
+
kernel = torch.exp(-(xx**2 + yy**2) / (2 * sigma**2))
|
| 92 |
+
kernel = kernel / kernel.sum() # Normalize
|
| 93 |
+
return kernel.unsqueeze(0).unsqueeze(0) # (1, 1, H, W)
|
| 94 |
+
|
| 95 |
+
def _apply_dog(
|
| 96 |
+
self,
|
| 97 |
+
x: torch.Tensor,
|
| 98 |
+
center_kernel: torch.Tensor,
|
| 99 |
+
surround_kernel: torch.Tensor,
|
| 100 |
+
kernel_size: int
|
| 101 |
+
) -> torch.Tensor:
|
| 102 |
+
"""Apply Difference of Gaussians (center - surround)."""
|
| 103 |
+
B, C, H, W = x.shape
|
| 104 |
+
padding = kernel_size // 2
|
| 105 |
+
|
| 106 |
+
# Expand kernels for all channels
|
| 107 |
+
center_k = center_kernel.expand(C, 1, -1, -1)
|
| 108 |
+
surround_k = surround_kernel.expand(C, 1, -1, -1)
|
| 109 |
+
|
| 110 |
+
# Pad surround kernel to match size if needed
|
| 111 |
+
c_size = center_k.shape[-1]
|
| 112 |
+
s_size = surround_k.shape[-1]
|
| 113 |
+
if c_size < s_size:
|
| 114 |
+
pad_amt = (s_size - c_size) // 2
|
| 115 |
+
center_k = F.pad(center_k, (pad_amt, pad_amt, pad_amt, pad_amt))
|
| 116 |
+
|
| 117 |
+
# Apply center and surround
|
| 118 |
+
center_response = F.conv2d(x, center_k, padding=padding, groups=C)
|
| 119 |
+
surround_response = F.conv2d(x, surround_k, padding=padding, groups=C)
|
| 120 |
+
|
| 121 |
+
# DoG: ON-center response (center - surround)
|
| 122 |
+
return center_response - surround_response
|
| 123 |
+
|
| 124 |
+
def forward(
|
| 125 |
+
self,
|
| 126 |
+
x_left: torch.Tensor,
|
| 127 |
+
x_right: torch.Tensor
|
| 128 |
+
) -> Tuple[torch.Tensor, torch.Tensor, torch.Tensor,
|
| 129 |
+
torch.Tensor, torch.Tensor, torch.Tensor]:
|
| 130 |
+
"""
|
| 131 |
+
Process left and right eye inputs through RGC populations.
|
| 132 |
+
|
| 133 |
+
Returns:
|
| 134 |
+
P_left, P_right: Midget RGC output (R-G opponency) -> P pathway
|
| 135 |
+
M_left, M_right: Parasol RGC output (luminance DoG) -> M pathway
|
| 136 |
+
K_left, K_right: Bistratified RGC output (S vs L+M) -> K pathway
|
| 137 |
+
"""
|
| 138 |
+
# ========== MIDGET RGCs -> P pathway ==========
|
| 139 |
+
# Red-Green opponency: L-cone vs M-cone
|
| 140 |
+
# Approximate: R channel vs G channel
|
| 141 |
+
# DoG on the opponent signal
|
| 142 |
+
|
| 143 |
+
# Extract R and G channels (approximating L and M cones)
|
| 144 |
+
R_left, G_left = x_left[:, 0:1], x_left[:, 1:2]
|
| 145 |
+
R_right, G_right = x_right[:, 0:1], x_right[:, 1:2]
|
| 146 |
+
|
| 147 |
+
# L-M opponency (R-G) with small receptive field DoG
|
| 148 |
+
rg_left = R_left - G_left
|
| 149 |
+
rg_right = R_right - G_right
|
| 150 |
+
|
| 151 |
+
P_left = self._apply_dog(rg_left, self.midget_center, self.midget_surround, self.midget_ks)
|
| 152 |
+
P_right = self._apply_dog(rg_right, self.midget_center, self.midget_surround, self.midget_ks)
|
| 153 |
+
|
| 154 |
+
# Expand back to 3 channels for compatibility
|
| 155 |
+
P_left = P_left.expand(-1, 3, -1, -1)
|
| 156 |
+
P_right = P_right.expand(-1, 3, -1, -1)
|
| 157 |
+
|
| 158 |
+
# ========== PARASOL RGCs -> M pathway ==========
|
| 159 |
+
# Achromatic: pool L+M (approximate as luminance)
|
| 160 |
+
# Large RF DoG for motion sensitivity
|
| 161 |
+
|
| 162 |
+
lum_left = 0.299 * x_left[:, 0:1] + 0.587 * x_left[:, 1:2] + 0.114 * x_left[:, 2:3]
|
| 163 |
+
lum_right = 0.299 * x_right[:, 0:1] + 0.587 * x_right[:, 1:2] + 0.114 * x_right[:, 2:3]
|
| 164 |
+
|
| 165 |
+
M_left = self._apply_dog(lum_left, self.parasol_center, self.parasol_surround, self.parasol_ks)
|
| 166 |
+
M_right = self._apply_dog(lum_right, self.parasol_center, self.parasol_surround, self.parasol_ks)
|
| 167 |
+
|
| 168 |
+
# Expand to 3 channels
|
| 169 |
+
M_left = M_left.expand(-1, 3, -1, -1)
|
| 170 |
+
M_right = M_right.expand(-1, 3, -1, -1)
|
| 171 |
+
|
| 172 |
+
# ========== SMALL BISTRATIFIED RGCs -> K pathway ==========
|
| 173 |
+
# S-cone ON center, (L+M) OFF surround
|
| 174 |
+
# Blue-Yellow opponency: S vs (L+M)
|
| 175 |
+
|
| 176 |
+
# S-cone approximated by B channel
|
| 177 |
+
# (L+M) approximated by (R+G)/2
|
| 178 |
+
S_left = x_left[:, 2:3] # Blue
|
| 179 |
+
S_right = x_right[:, 2:3]
|
| 180 |
+
LM_left = (x_left[:, 0:1] + x_left[:, 1:2]) / 2
|
| 181 |
+
LM_right = (x_right[:, 0:1] + x_right[:, 1:2]) / 2
|
| 182 |
+
|
| 183 |
+
# S - (L+M) opponency with medium RF
|
| 184 |
+
by_left = S_left - LM_left
|
| 185 |
+
by_right = S_right - LM_right
|
| 186 |
+
|
| 187 |
+
K_left = self._apply_dog(by_left, self.bistrat_center, self.bistrat_surround, self.bistrat_ks)
|
| 188 |
+
K_right = self._apply_dog(by_right, self.bistrat_center, self.bistrat_surround, self.bistrat_ks)
|
| 189 |
+
|
| 190 |
+
# Expand to 3 channels
|
| 191 |
+
K_left = K_left.expand(-1, 3, -1, -1)
|
| 192 |
+
K_right = K_right.expand(-1, 3, -1, -1)
|
| 193 |
+
|
| 194 |
+
return P_left, M_left, K_left, P_right, M_right, K_right
|
| 195 |
+
|
| 196 |
+
|
| 197 |
+
class BinocularPreMPK(nn.Module):
|
| 198 |
+
"""
|
| 199 |
+
Simulates retinal + LGN preprocessing for both eyes.
|
| 200 |
+
Each eye gets its own center-surround filtering.
|
| 201 |
+
|
| 202 |
+
Biological motivation:
|
| 203 |
+
- Retinal ganglion cells have center-surround receptive fields
|
| 204 |
+
- M cells respond to luminance changes (motion/gist)
|
| 205 |
+
- P cells respond to color/detail (high-pass filtered)
|
| 206 |
+
"""
|
| 207 |
+
def __init__(self, sigma: float = 1.0):
|
| 208 |
+
super().__init__()
|
| 209 |
+
self.sigma = sigma
|
| 210 |
+
ks = int(4 * sigma + 1) | 1 # ensure odd
|
| 211 |
+
ax = torch.arange(ks, dtype=torch.float32) - ks // 2
|
| 212 |
+
xx, yy = torch.meshgrid(ax, ax, indexing='ij')
|
| 213 |
+
kernel = torch.exp(-(xx**2 + yy**2) / (2 * sigma**2))
|
| 214 |
+
kernel = kernel / kernel.sum()
|
| 215 |
+
self.register_buffer('gauss', kernel.unsqueeze(0).unsqueeze(0))
|
| 216 |
+
self.ks = ks
|
| 217 |
+
|
| 218 |
+
def _blur(self, x: torch.Tensor) -> torch.Tensor:
|
| 219 |
+
B, C, H, W = x.shape
|
| 220 |
+
kernel = self.gauss.expand(C, 1, self.ks, self.ks)
|
| 221 |
+
return F.conv2d(x, kernel, padding=self.ks // 2, groups=C)
|
| 222 |
+
|
| 223 |
+
def forward(self, x_left: torch.Tensor, x_right: torch.Tensor) -> Tuple[torch.Tensor, ...]:
|
| 224 |
+
"""
|
| 225 |
+
Returns (P_left, M_left, P_right, M_right)
|
| 226 |
+
P = high-pass (center - surround) for detail
|
| 227 |
+
M = low-pass luminance for motion/gist
|
| 228 |
+
"""
|
| 229 |
+
# Left eye
|
| 230 |
+
blur_L = self._blur(x_left)
|
| 231 |
+
P_left = x_left - blur_L # high-pass (Parvo-like)
|
| 232 |
+
lum_L = x_left.mean(dim=1, keepdim=True)
|
| 233 |
+
M_left = self._blur(lum_L).expand(-1, 3, -1, -1) # low-pass luminance (Magno-like)
|
| 234 |
+
|
| 235 |
+
# Right eye
|
| 236 |
+
blur_R = self._blur(x_right)
|
| 237 |
+
P_right = x_right - blur_R
|
| 238 |
+
lum_R = x_right.mean(dim=1, keepdim=True)
|
| 239 |
+
M_right = self._blur(lum_R).expand(-1, 3, -1, -1)
|
| 240 |
+
|
| 241 |
+
return P_left, M_left, P_right, M_right
|
| 242 |
+
|
| 243 |
+
|
| 244 |
+
class StereoDisparity(nn.Module):
|
| 245 |
+
"""
|
| 246 |
+
Creates stereo disparity by horizontally shifting left/right views.
|
| 247 |
+
Simulates the slight positional difference between two eyes.
|
| 248 |
+
|
| 249 |
+
disparity_range: maximum pixel shift (positive = crossed disparity)
|
| 250 |
+
"""
|
| 251 |
+
def __init__(self, disparity_range: int = 2):
|
| 252 |
+
super().__init__()
|
| 253 |
+
self.disparity_range = disparity_range
|
| 254 |
+
|
| 255 |
+
def forward(self, x: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 256 |
+
"""
|
| 257 |
+
Takes single image, returns (left_view, right_view) with disparity.
|
| 258 |
+
For training, uses random disparity. For inference, uses fixed small disparity.
|
| 259 |
+
"""
|
| 260 |
+
B, C, H, W = x.shape
|
| 261 |
+
|
| 262 |
+
if self.training:
|
| 263 |
+
d = torch.randint(-self.disparity_range, self.disparity_range + 1, (1,)).item()
|
| 264 |
+
else:
|
| 265 |
+
d = 1
|
| 266 |
+
|
| 267 |
+
if d == 0:
|
| 268 |
+
return x, x
|
| 269 |
+
|
| 270 |
+
if d > 0:
|
| 271 |
+
x_left = F.pad(x[:, :, :, d:], (0, d, 0, 0), mode='replicate')
|
| 272 |
+
x_right = F.pad(x[:, :, :, :-d], (d, 0, 0, 0), mode='replicate')
|
| 273 |
+
else:
|
| 274 |
+
d = -d
|
| 275 |
+
x_left = F.pad(x[:, :, :, :-d], (d, 0, 0, 0), mode='replicate')
|
| 276 |
+
x_right = F.pad(x[:, :, :, d:], (0, d, 0, 0), mode='replicate')
|
| 277 |
+
|
| 278 |
+
return x_left, x_right
|
| 279 |
+
|
| 280 |
+
|
| 281 |
+
class OcularDominanceConv(nn.Module):
|
| 282 |
+
"""
|
| 283 |
+
Convolution with ocular dominance - channels are assigned to left/right eye
|
| 284 |
+
with graded mixing (some purely monocular, some binocular).
|
| 285 |
+
|
| 286 |
+
Inspired by V1 ocular dominance columns but applied at LGN stage
|
| 287 |
+
for computational efficiency.
|
| 288 |
+
"""
|
| 289 |
+
def __init__(self, in_ch: int, out_ch: int, kernel_size: int,
|
| 290 |
+
monocular_ratio: float = 0.5):
|
| 291 |
+
super().__init__()
|
| 292 |
+
self.out_ch = out_ch
|
| 293 |
+
self.monocular_ratio = monocular_ratio
|
| 294 |
+
|
| 295 |
+
n_mono = int(out_ch * monocular_ratio)
|
| 296 |
+
n_mono_per_eye = n_mono // 2
|
| 297 |
+
n_bino = out_ch - 2 * n_mono_per_eye
|
| 298 |
+
|
| 299 |
+
self.n_left = n_mono_per_eye
|
| 300 |
+
self.n_right = n_mono_per_eye
|
| 301 |
+
self.n_bino = n_bino
|
| 302 |
+
|
| 303 |
+
self.conv_left = nn.Conv2d(in_ch, n_mono_per_eye, kernel_size, padding=kernel_size//2)
|
| 304 |
+
self.conv_right = nn.Conv2d(in_ch, n_mono_per_eye, kernel_size, padding=kernel_size//2)
|
| 305 |
+
self.conv_bino_L = nn.Conv2d(in_ch, n_bino, kernel_size, padding=kernel_size//2)
|
| 306 |
+
self.conv_bino_R = nn.Conv2d(in_ch, n_bino, kernel_size, padding=kernel_size//2)
|
| 307 |
+
self.bn = nn.BatchNorm2d(out_ch)
|
| 308 |
+
|
| 309 |
+
def forward(self, x_left: torch.Tensor, x_right: torch.Tensor) -> torch.Tensor:
|
| 310 |
+
left_only = self.conv_left(x_left)
|
| 311 |
+
right_only = self.conv_right(x_right)
|
| 312 |
+
bino = self.conv_bino_L(x_left) + self.conv_bino_R(x_right)
|
| 313 |
+
out = torch.cat([left_only, right_only, bino], dim=1)
|
| 314 |
+
return F.relu(self.bn(out))
|
| 315 |
+
|
| 316 |
+
|
| 317 |
+
class BinocularMPKPathway(nn.Module):
|
| 318 |
+
"""
|
| 319 |
+
Single pathway (M, P, or K) with binocular processing.
|
| 320 |
+
Receives left and right eye inputs, produces fused output.
|
| 321 |
+
"""
|
| 322 |
+
def __init__(self, in_ch: int, out_ch: int, kernel_sizes: list,
|
| 323 |
+
monocular_ratio: float = 0.5):
|
| 324 |
+
super().__init__()
|
| 325 |
+
|
| 326 |
+
layers = []
|
| 327 |
+
ch = in_ch
|
| 328 |
+
for i, ks in enumerate(kernel_sizes):
|
| 329 |
+
is_first = (i == 0)
|
| 330 |
+
if is_first:
|
| 331 |
+
layers.append(OcularDominanceConv(ch, out_ch, ks, monocular_ratio))
|
| 332 |
+
else:
|
| 333 |
+
layers.append(nn.Sequential(
|
| 334 |
+
nn.Conv2d(out_ch if i > 0 else ch, out_ch, ks, padding=ks//2),
|
| 335 |
+
nn.BatchNorm2d(out_ch),
|
| 336 |
+
nn.ReLU(inplace=True)
|
| 337 |
+
))
|
| 338 |
+
ch = out_ch
|
| 339 |
+
|
| 340 |
+
self.first_layer = layers[0]
|
| 341 |
+
self.rest = nn.Sequential(*layers[1:]) if len(layers) > 1 else nn.Identity()
|
| 342 |
+
|
| 343 |
+
def forward(self, x_left: torch.Tensor, x_right: torch.Tensor) -> torch.Tensor:
|
| 344 |
+
x = self.first_layer(x_left, x_right)
|
| 345 |
+
return self.rest(x)
|
| 346 |
+
|
| 347 |
+
|
| 348 |
+
class MonocularPathwayBlock(nn.Module):
|
| 349 |
+
"""
|
| 350 |
+
Single pathway block that keeps left/right eyes separate.
|
| 351 |
+
Used for LGN processing where eye segregation persists.
|
| 352 |
+
"""
|
| 353 |
+
def __init__(self, in_ch: int, out_ch: int, kernel_size: int):
|
| 354 |
+
super().__init__()
|
| 355 |
+
self.conv_left = nn.Sequential(
|
| 356 |
+
nn.Conv2d(in_ch, out_ch, kernel_size, padding=kernel_size//2),
|
| 357 |
+
nn.BatchNorm2d(out_ch),
|
| 358 |
+
nn.ReLU(inplace=True)
|
| 359 |
+
)
|
| 360 |
+
self.conv_right = nn.Sequential(
|
| 361 |
+
nn.Conv2d(in_ch, out_ch, kernel_size, padding=kernel_size//2),
|
| 362 |
+
nn.BatchNorm2d(out_ch),
|
| 363 |
+
nn.ReLU(inplace=True)
|
| 364 |
+
)
|
| 365 |
+
|
| 366 |
+
def forward(self, x_left: torch.Tensor, x_right: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 367 |
+
return self.conv_left(x_left), self.conv_right(x_right)
|
| 368 |
+
|
| 369 |
+
|
| 370 |
+
class StridedMonocularBlock(nn.Module):
|
| 371 |
+
"""
|
| 372 |
+
Monocular pathway block with configurable stride.
|
| 373 |
+
Keeps left/right eyes separate, uses stride to control spatial sampling.
|
| 374 |
+
|
| 375 |
+
Used in V4 for stride-based pathway differentiation.
|
| 376 |
+
"""
|
| 377 |
+
def __init__(self, in_ch: int, out_ch: int, kernel_size: int = 3, stride: int = 1):
|
| 378 |
+
super().__init__()
|
| 379 |
+
padding = kernel_size // 2
|
| 380 |
+
self.conv_left = nn.Sequential(
|
| 381 |
+
nn.Conv2d(in_ch, out_ch, kernel_size, stride=stride, padding=padding),
|
| 382 |
+
nn.BatchNorm2d(out_ch),
|
| 383 |
+
nn.ReLU(inplace=True)
|
| 384 |
+
)
|
| 385 |
+
self.conv_right = nn.Sequential(
|
| 386 |
+
nn.Conv2d(in_ch, out_ch, kernel_size, stride=stride, padding=padding),
|
| 387 |
+
nn.BatchNorm2d(out_ch),
|
| 388 |
+
nn.ReLU(inplace=True)
|
| 389 |
+
)
|
| 390 |
+
|
| 391 |
+
def forward(self, x_left: torch.Tensor, x_right: torch.Tensor) -> Tuple[torch.Tensor, torch.Tensor]:
|
| 392 |
+
return self.conv_left(x_left), self.conv_right(x_right)
|
| 393 |
+
|
| 394 |
+
|
| 395 |
+
def count_params(model: nn.Module) -> int:
|
| 396 |
+
"""Count total trainable parameters."""
|
| 397 |
+
return sum(p.numel() for p in model.parameters())
|
mpknet_v6.py
ADDED
|
@@ -0,0 +1,207 @@
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
| 1 |
+
"""
|
| 2 |
+
BinocularMPKNet V6 - First complete M/P/K pathway implementation with Fibonacci strides.
|
| 3 |
+
|
| 4 |
+
Key innovations:
|
| 5 |
+
1. First Fibonacci strides (2:3:5) in CNNs - derived from biological spatial frequency tuning
|
| 6 |
+
2. First complete M/P/K implementation - prior work (Magno-Parvo CNN, EVNets) models M/P only
|
| 7 |
+
3. Biologically-grounded K→M/P gating - extends cross-attention (Bahdanau, FiLM) with LGN anatomy
|
| 8 |
+
|
| 9 |
+
Fibonacci-inspired stride ratios (2:3:5) for P:K:M pathways:
|
| 10 |
+
- P: stride=2, kernel=5 (fine detail, ~80% of LGN neurons)
|
| 11 |
+
- K: stride=3, kernel=5 (context/modulation, ~10% of LGN)
|
| 12 |
+
- M: stride=5, kernel=5 (global gist, ~10% of LGN)
|
| 13 |
+
|
| 14 |
+
Results:
|
| 15 |
+
- 89.38% on CIFAR-10 with 0.539M parameters
|
| 16 |
+
- 60.8% on ImageNet-100 with 0.54M parameters
|
| 17 |
+
- 89.2% on Kvasir-v2 with 0.21M parameters
|
| 18 |
+
|
| 19 |
+
The stride ratios produce resolutions converging toward golden ratio (φ ≈ 1.618),
|
| 20 |
+
optimizing multi-scale coverage without redundancy - same principle as phyllotaxis.
|
| 21 |
+
|
| 22 |
+
Prior art acknowledgment:
|
| 23 |
+
- Cross-stream attention: Bahdanau (2014), FiLM (2018), SlowFast laterals (2019)
|
| 24 |
+
- M/P pathways: Magno-Parvo CNN (2022), EVNets (2024)
|
| 25 |
+
- Contribution: Complete M/P/K with functional K gating, Fibonacci strides
|
| 26 |
+
"""
|
| 27 |
+
|
| 28 |
+
import torch
|
| 29 |
+
import torch.nn as nn
|
| 30 |
+
import torch.nn.functional as F
|
| 31 |
+
|
| 32 |
+
from mpknet_components import (
|
| 33 |
+
BinocularPreMPK,
|
| 34 |
+
StereoDisparity,
|
| 35 |
+
StridedMonocularBlock,
|
| 36 |
+
count_params,
|
| 37 |
+
)
|
| 38 |
+
|
| 39 |
+
|
| 40 |
+
class BinocularMPKNetV6(nn.Module):
|
| 41 |
+
"""
|
| 42 |
+
Binocular MPKNet V6 with fibonacci stride scaling.
|
| 43 |
+
|
| 44 |
+
Key changes from V4:
|
| 45 |
+
- Larger kernel (5 vs 3)
|
| 46 |
+
- Fibonacci strides: P=2, K=3, M=5
|
| 47 |
+
- Same information extraction, fewer FLOPs
|
| 48 |
+
|
| 49 |
+
The stride/kernel ratio ~0.4-1.0 provides efficient coverage:
|
| 50 |
+
- P: 5/2 = 2.5 overlap per step (fine but not redundant)
|
| 51 |
+
- K: 5/3 = 1.67 overlap (moderate)
|
| 52 |
+
- M: 5/5 = 1.0 no overlap (coarse gist)
|
| 53 |
+
"""
|
| 54 |
+
def __init__(self, num_classes: int = 10, ch: int = 48,
|
| 55 |
+
use_stereo: bool = True, disparity_range: int = 2,
|
| 56 |
+
kernel_size: int = 5):
|
| 57 |
+
super().__init__()
|
| 58 |
+
|
| 59 |
+
self.use_stereo = use_stereo
|
| 60 |
+
self.kernel_size = kernel_size
|
| 61 |
+
|
| 62 |
+
# Fibonacci strides: 2, 3, 5
|
| 63 |
+
self.p_stride = 2
|
| 64 |
+
self.k_stride = 3
|
| 65 |
+
self.m_stride = 5
|
| 66 |
+
|
| 67 |
+
if use_stereo:
|
| 68 |
+
self.stereo = StereoDisparity(disparity_range)
|
| 69 |
+
|
| 70 |
+
self.pre_mpk = BinocularPreMPK(sigma=1.0)
|
| 71 |
+
|
| 72 |
+
# ========== BLOCK 1 ==========
|
| 73 |
+
# P pathway: stride=2 (detail without noise), 2 layers
|
| 74 |
+
self.P_block1_layer1 = StridedMonocularBlock(3, ch, kernel_size, stride=self.p_stride)
|
| 75 |
+
self.P_block1_layer2 = StridedMonocularBlock(ch, ch, kernel_size, stride=1)
|
| 76 |
+
|
| 77 |
+
# K pathway: stride=3 (context), 1 layer
|
| 78 |
+
self.K_block1 = StridedMonocularBlock(3, ch // 2, kernel_size, stride=self.k_stride)
|
| 79 |
+
|
| 80 |
+
# M pathway: stride=5 (global gist), 1 layer
|
| 81 |
+
self.M_block1 = StridedMonocularBlock(3, ch, kernel_size, stride=self.m_stride)
|
| 82 |
+
|
| 83 |
+
# K gates for block 1
|
| 84 |
+
self.k_gate1_M_left = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 85 |
+
self.k_gate1_M_right = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 86 |
+
self.k_gate1_P_left = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 87 |
+
self.k_gate1_P_right = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 88 |
+
|
| 89 |
+
# ========== BLOCK 2 ==========
|
| 90 |
+
# All stride=1 now (already at different resolutions)
|
| 91 |
+
self.P_block2_layer1 = StridedMonocularBlock(ch, ch, kernel_size, stride=1)
|
| 92 |
+
self.P_block2_layer2 = StridedMonocularBlock(ch, ch, kernel_size, stride=1)
|
| 93 |
+
|
| 94 |
+
self.K_block2 = StridedMonocularBlock(ch // 2, ch // 2, kernel_size, stride=1)
|
| 95 |
+
|
| 96 |
+
self.M_block2 = StridedMonocularBlock(ch, ch, kernel_size, stride=1)
|
| 97 |
+
|
| 98 |
+
# K gates for block 2
|
| 99 |
+
self.k_gate2_M_left = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 100 |
+
self.k_gate2_M_right = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 101 |
+
self.k_gate2_P_left = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 102 |
+
self.k_gate2_P_right = nn.Sequential(nn.Linear(ch // 2, ch), nn.Sigmoid())
|
| 103 |
+
|
| 104 |
+
# ========== V1 FUSION ==========
|
| 105 |
+
self.v1_fusion = nn.Sequential(
|
| 106 |
+
nn.Conv2d(ch * 4, ch * 2, 1),
|
| 107 |
+
nn.BatchNorm2d(ch * 2),
|
| 108 |
+
nn.ReLU(inplace=True),
|
| 109 |
+
)
|
| 110 |
+
|
| 111 |
+
# Classification head (dropout before FC per NiN paper)
|
| 112 |
+
self.gap = nn.AdaptiveAvgPool2d(1)
|
| 113 |
+
self.dropout = nn.Dropout(p=0.5)
|
| 114 |
+
self.fc = nn.Linear(ch * 2, num_classes)
|
| 115 |
+
|
| 116 |
+
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 117 |
+
# Create stereo views
|
| 118 |
+
if self.use_stereo:
|
| 119 |
+
x_left, x_right = self.stereo(x)
|
| 120 |
+
else:
|
| 121 |
+
x_left, x_right = x, x
|
| 122 |
+
|
| 123 |
+
# Retinal preprocessing
|
| 124 |
+
P_left, M_left, P_right, M_right = self.pre_mpk(x_left, x_right)
|
| 125 |
+
|
| 126 |
+
# ========== BLOCK 1 ==========
|
| 127 |
+
# K first (from original input)
|
| 128 |
+
K_left, K_right = self.K_block1(P_left, P_right)
|
| 129 |
+
|
| 130 |
+
# P pathway: 2 layers
|
| 131 |
+
P_left, P_right = self.P_block1_layer1(P_left, P_right)
|
| 132 |
+
P_left, P_right = self.P_block1_layer2(P_left, P_right)
|
| 133 |
+
|
| 134 |
+
# M pathway: 1 layer
|
| 135 |
+
M_left, M_right = self.M_block1(M_left, M_right)
|
| 136 |
+
|
| 137 |
+
# K gate 1 - GAP makes it resolution-independent
|
| 138 |
+
k_ctx1_left = self.gap(K_left).flatten(1)
|
| 139 |
+
k_ctx1_right = self.gap(K_right).flatten(1)
|
| 140 |
+
|
| 141 |
+
gate1_M_left = self.k_gate1_M_left(k_ctx1_left).unsqueeze(-1).unsqueeze(-1)
|
| 142 |
+
gate1_M_right = self.k_gate1_M_right(k_ctx1_right).unsqueeze(-1).unsqueeze(-1)
|
| 143 |
+
gate1_P_left = self.k_gate1_P_left(k_ctx1_left).unsqueeze(-1).unsqueeze(-1)
|
| 144 |
+
gate1_P_right = self.k_gate1_P_right(k_ctx1_right).unsqueeze(-1).unsqueeze(-1)
|
| 145 |
+
|
| 146 |
+
M_left = M_left * gate1_M_left
|
| 147 |
+
M_right = M_right * gate1_M_right
|
| 148 |
+
P_left = P_left * gate1_P_left
|
| 149 |
+
P_right = P_right * gate1_P_right
|
| 150 |
+
|
| 151 |
+
# ========== BLOCK 2 ==========
|
| 152 |
+
P_left, P_right = self.P_block2_layer1(P_left, P_right)
|
| 153 |
+
P_left, P_right = self.P_block2_layer2(P_left, P_right)
|
| 154 |
+
|
| 155 |
+
K_left, K_right = self.K_block2(K_left, K_right)
|
| 156 |
+
|
| 157 |
+
M_left, M_right = self.M_block2(M_left, M_right)
|
| 158 |
+
|
| 159 |
+
# K gate 2
|
| 160 |
+
k_ctx2_left = self.gap(K_left).flatten(1)
|
| 161 |
+
k_ctx2_right = self.gap(K_right).flatten(1)
|
| 162 |
+
|
| 163 |
+
gate2_M_left = self.k_gate2_M_left(k_ctx2_left).unsqueeze(-1).unsqueeze(-1)
|
| 164 |
+
gate2_M_right = self.k_gate2_M_right(k_ctx2_right).unsqueeze(-1).unsqueeze(-1)
|
| 165 |
+
gate2_P_left = self.k_gate2_P_left(k_ctx2_left).unsqueeze(-1).unsqueeze(-1)
|
| 166 |
+
gate2_P_right = self.k_gate2_P_right(k_ctx2_right).unsqueeze(-1).unsqueeze(-1)
|
| 167 |
+
|
| 168 |
+
M_left = M_left * gate2_M_left
|
| 169 |
+
M_right = M_right * gate2_M_right
|
| 170 |
+
P_left = P_left * gate2_P_left
|
| 171 |
+
P_right = P_right * gate2_P_right
|
| 172 |
+
|
| 173 |
+
# ========== V1 FUSION ==========
|
| 174 |
+
# Match spatial sizes only at fusion (pool to smallest)
|
| 175 |
+
target_size = M_left.shape[-1] # M is smallest
|
| 176 |
+
if P_left.shape[-1] != target_size:
|
| 177 |
+
P_left = F.adaptive_avg_pool2d(P_left, target_size)
|
| 178 |
+
P_right = F.adaptive_avg_pool2d(P_right, target_size)
|
| 179 |
+
if K_left.shape[-1] != target_size:
|
| 180 |
+
K_left = F.adaptive_avg_pool2d(K_left, target_size)
|
| 181 |
+
K_right = F.adaptive_avg_pool2d(K_right, target_size)
|
| 182 |
+
|
| 183 |
+
# Combine all four streams (M and P from both eyes)
|
| 184 |
+
z = torch.cat([M_left, M_right, P_left, P_right], dim=1)
|
| 185 |
+
z = self.v1_fusion(z)
|
| 186 |
+
|
| 187 |
+
# Classification
|
| 188 |
+
z = self.gap(z).flatten(1)
|
| 189 |
+
z = self.dropout(z)
|
| 190 |
+
return self.fc(z)
|
| 191 |
+
|
| 192 |
+
|
| 193 |
+
if __name__ == "__main__":
|
| 194 |
+
model = BinocularMPKNetV6(num_classes=10, ch=48, use_stereo=True)
|
| 195 |
+
print(f"BinocularMPKNet V6 params: {count_params(model)/1e6:.3f}M")
|
| 196 |
+
print(f"Strides: P={model.p_stride}, K={model.k_stride}, M={model.m_stride}")
|
| 197 |
+
print(f"Kernel: {model.kernel_size}")
|
| 198 |
+
|
| 199 |
+
# Test on CIFAR-10 size
|
| 200 |
+
x = torch.randn(2, 3, 32, 32)
|
| 201 |
+
y = model(x)
|
| 202 |
+
print(f"Input: {x.shape}, Output: {y.shape}")
|
| 203 |
+
|
| 204 |
+
# Test on larger input
|
| 205 |
+
x = torch.randn(2, 3, 224, 224)
|
| 206 |
+
y = model(x)
|
| 207 |
+
print(f"Input: {x.shape}, Output: {y.shape}")
|
v6_kvasir_best.pth
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:4347d2777ede2279440e1c1f5e264dc8d7724974eb6598a42e9abc2c16d26cb0
|
| 3 |
+
size 2210203
|