import os, sys ROOT_DIR = os.path.dirname(os.path.abspath(__file__)) sys.path.append(ROOT_DIR) import gc import torch import torchvision from torch import nn from torchvision.utils import save_image from torch.utils.data import DataLoader from torch.optim import Adam, SGD from Diffusion.diffuser import DeformDDPM from Diffusion.networks import get_net, STN from torchvision.transforms import Lambda import torch.nn.functional as F import Diffusion.losses as losses import random import glob import numpy as np import utils from tqdm import tqdm from Dataloader.dataloader0 import get_dataloader from Dataloader.dataLoader import * from Dataloader.dataloader_utils import thresh_img import yaml import argparse # XPU support: import Intel Extension for PyTorch and oneCCL bindings if available try: import intel_extension_for_pytorch as ipex except ImportError: ipex = None try: import oneccl_bindings_for_pytorch except (ImportError, Exception) as e: print(f"WARNING: Failed to import oneccl_bindings_for_pytorch: {e}") #################### import torch.multiprocessing as mp from torch.utils.data.distributed import DistributedSampler from torch.nn.parallel import DistributedDataParallel as DDP import torch.distributed as dist # from torch.distributed import init_process_group ############### def _device_available(device_type): if device_type == 'xpu': return hasattr(torch, 'xpu') and torch.xpu.is_available() return torch.cuda.is_available() def _device_count(device_type): if device_type == 'xpu': return torch.xpu.device_count() if hasattr(torch, 'xpu') else 0 return torch.cuda.device_count() def _set_device(rank, device_type): if device_type == 'xpu': torch.xpu.set_device(rank) else: torch.cuda.set_device(rank) def _empty_cache(device_type): if device_type == 'xpu' and hasattr(torch, 'xpu'): torch.xpu.empty_cache() elif torch.cuda.is_available(): torch.cuda.empty_cache() def ddp_setup(rank, world_size): """ Args: rank: Unique identifier of each process (local_rank when launched by torchrun) world_size: Total number of processes """ backend = "ccl" if DEVICE_TYPE == "xpu" else "nccl" if "LOCAL_RANK" in os.environ: # Launched by torchrun: MASTER_ADDR, MASTER_PORT, RANK, WORLD_SIZE already set dist.init_process_group(backend=backend) _set_device(int(os.environ["LOCAL_RANK"]), DEVICE_TYPE) else: # Single-node mp.spawn os.environ["MASTER_ADDR"] = "localhost" os.environ["MASTER_PORT"] = "12355" dist.init_process_group(backend=backend, rank=rank, world_size=world_size) _set_device(rank, DEVICE_TYPE) EPS = 1e-5 MSK_EPS = 0.01 TEXT_EMBED_PROB = 0.5 AUG_RESAMPLE_PROB = 0.5 LOSS_WEIGHTS_DIFF = [2.0, 1.0, 4.0] # [ang, dist, reg] # LOSS_WEIGHTS_REGIST = [9.0, 1.0, 16.0] # [imgsim, imgmse, ddf] LOSS_WEIGHTS_REGIST = [1.0, 0.01, 1e2] # [imgsim, imgmse, ddf] DIFF_REG_BATCH_RATIO = 2 LOSS_WEIGHT_CONTRASTIVE = 0.001 REGISTRATION_STEP_RATIO = 1 CONTRASTIVE_STEP_RATIO = 1 # AUG_PERMUTE_PROB = 0.35 parser = argparse.ArgumentParser() # config_file_path = 'Config/config_cmr.yaml' parser.add_argument( "--config", "-C", help="Path for the config file", type=str, # default="Config/config_cmr.yaml", # default="Config/config_lct.yaml", default="Config/config_all.yaml", required=False, ) parser.add_argument("--batchsize", type=int, default=0, help="Override batch size from config (0=use config value)") args = parser.parse_args() # Read config early to determine device type for DDP setup with open(args.config, 'r') as _f: _cfg = yaml.safe_load(_f) DEVICE_TYPE = _cfg.get('device', 'cuda') # 'cuda' or 'xpu' # Auto-detect: use DDP only when multiple devices are available use_distributed = _device_available(DEVICE_TYPE) and _device_count(DEVICE_TYPE) > 1 # use_distributed = True # use_distributed = False #======================================================================================================================= def main_train(rank=0,world_size=1,train_mode_ratio=1,thresh_imgsim=0.01): if use_distributed: ddp_setup(rank,world_size) if torch.distributed.is_initialized() and rank == 0: print(f"World size: {torch.distributed.get_world_size()}") print(f"Communication backend: {torch.distributed.get_backend()}") # gpu_id = global rank (for save/print guards); rank = local device index if "RANK" in os.environ: gpu_id = int(os.environ["RANK"]) rank = int(os.environ["LOCAL_RANK"]) else: gpu_id = rank # Load the YAML file into a dictionary with open(args.config, 'r') as file: hyp_parameters = yaml.safe_load(file) if args.batchsize > 0: hyp_parameters['batchsize'] = args.batchsize if gpu_id == 0: print(hyp_parameters) # epoch_per_save=10 epoch_per_save=hyp_parameters['epoch_per_save'] data_name=hyp_parameters['data_name'] net_name = hyp_parameters['net_name'] Net=get_net(net_name) suffix_pth=f'_{data_name}_{net_name}.pth' model_save_path = os.path.join('Models',f'{data_name}_{net_name}/') model_dir=model_save_path transformer=utils.get_transformer(img_sz=hyp_parameters["ndims"]*[hyp_parameters['img_size']]) # Data_Loader=get_dataloader(data_name=hyp_parameters['data_name'], mode='train') # tsfm = torchvision.transforms.Compose([ # torchvision.transforms.ToTensor(), # ]) # dataset = Data_Loader(target_res = [hyp_parameters["img_size"]]*hyp_parameters["ndims"], transforms=None, noise_scale=hyp_parameters['noise_scale']) # train_loader = DataLoader( # dataset, # batch_size=hyp_parameters['batchsize'], # # shuffle=False, # shuffle=True, # drop_last=True, # ) # dataset = OminiDataset_v1(transform=None) dataset = OMDataset_indiv(transform=None) # datasetp = OminiDataset_paired(transform=None) datasetp = OMDataset_pair(transform=None) if use_distributed: sampler = DistributedSampler(dataset, shuffle=True) sampler_p = DistributedSampler(datasetp, shuffle=True) else: sampler = None sampler_p = None train_loader = DataLoader( dataset, batch_size=hyp_parameters['batchsize'], shuffle=(sampler is None), drop_last=True, sampler=sampler, ) train_loader_p = DataLoader( datasetp, batch_size=max(1, hyp_parameters['batchsize']//DIFF_REG_BATCH_RATIO), shuffle=(sampler_p is None), drop_last=True, sampler=sampler_p, ) Deformddpm = DeformDDPM( network=Net( n_steps=hyp_parameters["timesteps"], ndims=hyp_parameters["ndims"], num_input_chn = hyp_parameters["num_input_chn"], res = hyp_parameters['img_size'] ), n_steps=hyp_parameters["timesteps"], image_chw=[1] + [hyp_parameters["img_size"]]*hyp_parameters["ndims"], device=hyp_parameters["device"], batch_size=hyp_parameters["batchsize"], img_pad_mode=hyp_parameters["img_pad_mode"], v_scale=hyp_parameters["v_scale"], ) ddf_stn = STN( img_sz=hyp_parameters["img_size"], ndims=hyp_parameters["ndims"], # padding_mode="zeros", padding_mode=hyp_parameters["padding_mode"], device=hyp_parameters["device"], ) if use_distributed: device = f"{DEVICE_TYPE}:{rank}" Deformddpm.to(device) Deformddpm = DDP(Deformddpm, device_ids=[rank]) ddf_stn.to(device) else: Deformddpm.to(hyp_parameters["device"]) ddf_stn.to(hyp_parameters["device"]) # ddf_stn = DDP(ddf_stn, device_ids=[rank]) # mse = nn.MSELoss() # loss_reg = losses.Grad(penalty=['l1', 'negdetj'], ndims=hyp_parameters["ndims"]) # loss_reg = losses.Grad(penalty=['l1', 'negdetj', 'range'], ndims=hyp_parameters["ndims"]) loss_reg = losses.Grad(penalty=['l1', 'negdetj', 'range'], ndims=hyp_parameters["ndims"],outrange_thresh=0.2,outrange_weight=1e3) loss_reg1 = losses.Grad(penalty=['l1', 'negdetj', 'range'], ndims=hyp_parameters["ndims"],outrange_thresh=0.6,outrange_weight=1e3) loss_dist = losses.MRSE(img_sz=hyp_parameters["img_size"]) # loss_ang = losses.MRSE(img_sz=hyp_parameters["img_size"]) loss_ang = losses.NCC(img_sz=hyp_parameters["img_size"]) loss_imgsim = losses.MSLNCC() loss_imgmse = losses.LMSE() optimizer = Adam(Deformddpm.parameters(), lr=hyp_parameters["lr"]) # hyp_parameters["lr"]=0.00000001 # optimizer_regist = Adam(Deformddpm.parameters(), lr=hyp_parameters["lr"]*0.01) # optimizer_regist = SGD(Deformddpm.parameters(), lr=hyp_parameters["lr"]*0.01, momentum=0.98) # optimizer = SGD(Deformddpm.parameters(), lr=hyp_parameters["lr"], momentum=0.9) # # LR scheduler ----- YHM # scheduler = torch.optim.lr_scheduler.CyclicLR(optimizer, hyp_parameters["lr"], hyp_parameters["lr"]*10, step_size_up=500, step_size_down=500, mode='triangular', gamma=1.0, scale_fn=None, scale_mode='cycle', cycle_momentum=True, base_momentum=0.8, max_momentum=0.9, last_epoch=-1) # Deformddpm.network.load_state_dict(torch.load('/home/data/jzheng/Adaptive_Motion_Generator-master/models/1000.pth')) # check for existing models if not os.path.exists(model_dir): os.makedirs(model_dir, exist_ok=True) model_files = glob.glob(os.path.join(model_dir, "*.pth")) model_files.sort() if model_files: if gpu_id == 0: print(model_files) initial_epoch, Deformddpm, optimizer = ddp_load_dict(gpu_id, Deformddpm, optimizer, model_files[-1], use_distributed=use_distributed) else: initial_epoch = 0 if gpu_id == 0: print('len_train_data: ',len(dataset)) # Training loop for epoch in range(initial_epoch,hyp_parameters["epoch"]): if use_distributed and sampler is not None: sampler.set_epoch(epoch) sampler_p.set_epoch(epoch) epoch_loss_tot = 0.0 epoch_loss_gen_d = 0.0 epoch_loss_gen_a = 0.0 epoch_loss_reg = 0.0 epoch_loss_regist = 0.0 epoch_loss_imgsim = 0.0 epoch_loss_imgmse = 0.0 epoch_loss_ddfreg = 0.0 epoch_loss_contrastive = 0.0 # Set model inside to train model Deformddpm.train() loss_nan_step = 0 # yu: count the number of nan loss steps total = min(len(train_loader), len(train_loader_p)) total_reg = total // REGISTRATION_STEP_RATIO # for step, batch in tqdm(enumerate(train_loader)): # for step, batch in tqdm(enumerate(train_loader)): # for step, batch in enumerate(train_loader_omni): for step, (batch, batch_p) in tqdm(enumerate(zip(train_loader, train_loader_p)), total=total): # x0, _ = batch # ========================================================================== # diffusion train on single image # x0 = batch # for omni dataset [x0,embd] = batch # for om dataset x0 = x0.to(hyp_parameters["device"]).type(torch.float32) # print('embd:', embd.shape) embd_dev = embd.to(hyp_parameters["device"]).type(torch.float32) if np.random.uniform(0,1) n x0 = x0.to(hyp_parameters["device"]) blind_mask = utils.get_random_deformed_mask(x0.shape[2:],apply_possibility=0.6).to(hyp_parameters["device"]) # random deformation + rotation if hyp_parameters["ndims"]>2: if np.random.uniform(0,1)0: if np.random.uniform(0,1)> JZ: print nan in x0 if torch.isnan(x0).any(): print(f"*** Encountered NaN in input image x0 at epoch {epoch}, step {step}.") # >> JZ: print loss of ddf if loss_ddf>0.001: print(f"*** High diffusion DDF loss at epoch {epoch}, step {step}: {loss_ddf.item()}.") # yu: check if loss_tot==nan or inf if torch.isnan(loss_tot) or torch.isinf(loss_tot): print(f"*** Encountered NaN or Inf loss at epoch {epoch}, step {step}. Skipping this batch.") loss_nan_step += 1 continue if loss_nan_step > 5: print(f"*** Too many NaN or Inf losses ({loss_nan_step} times) at epoch {epoch}, step {step}. Stopping training.") raise ValueError("Too many NaN losses detected in loss_tot. Code terminated.") optimizer.zero_grad() loss_tot.backward() optimizer.step() epoch_loss_tot += loss_tot.item() / total epoch_loss_gen_d += loss_gen_d.item() / total epoch_loss_gen_a += loss_gen_a.item() / total epoch_loss_reg += loss_ddf.item() / total # ========================================================================== # contrastive train on single image (text-image alignment) loss_contra_val = None if step % CONTRASTIVE_STEP_RATIO == 0: raw_network = Deformddpm.module.network if use_distributed else Deformddpm.network n_contra = x0.size()[0] t_contra = torch.randint(0, hyp_parameters["timesteps"], (n_contra,)).to(hyp_parameters["device"]) _ = raw_network(x=(x0 * blind_mask).detach(), y=cond_img.detach(), t=t_contra, text=None) if hasattr(raw_network, 'img_embd') and raw_network.img_embd is not None: img_embd = raw_network.img_embd # [B, 1024] loss_contra = LOSS_WEIGHT_CONTRASTIVE * F.relu(1 - F.cosine_similarity(img_embd, embd_dev, dim=-1).mean()-0.05) # contrastive loss to align image embedding with text embedding, with a margin of 0.02 optimizer.zero_grad() loss_contra.backward() torch.nn.utils.clip_grad_norm_(Deformddpm.parameters(), max_norm=0.02) optimizer.step() loss_contra_val = loss_contra.item() epoch_loss_contrastive += loss_contra_val / total * CONTRASTIVE_STEP_RATIO else: if gpu_id == 0: print(f"*** Warning: Network does not have img_embd attribute for contrastive loss at epoch {epoch}, step {step}.") # ========================================================================== # registration train on paired images if step%REGISTRATION_STEP_RATIO == 0 and loss_gen_a.item()<-0.6: # only train registration on relatively well-deformed images, to avoid too large registration loss and unstable training in the early stage [x1, y1, _, embd_y] = batch_p if np.random.uniform(0,1) n [x1, y1] = utils.random_permute([x1, y1], select_dims=[-1,-2,-3]) if hyp_parameters['noise_scale']>0: [x1, y1] = thresh_img([x1, y1], [0, 2*hyp_parameters['noise_scale']]) random_scale = np.random.normal(1, hyp_parameters['noise_scale'] * 1) random_shift = np.random.normal(0, hyp_parameters['noise_scale'] * 1) x1 = x1 * random_scale + random_shift y1 = y1 * random_scale + random_shift scale_regist = np.random.uniform(0.0,0.7) select_timestep = np.random.randint(12, 25) # select a random number of timesteps to sample, between 8 and 16 T_regist = sorted(random.sample(range(int(hyp_parameters["timesteps"] * scale_regist),hyp_parameters["timesteps"]), select_timestep), reverse=True) T_regist = [[t for _ in range(max(1, hyp_parameters["batchsize"]//2))] for t in T_regist] proc_type = random.choice(['downsample', 'slice', 'slice1', 'none', 'none']) ddpm_inner = Deformddpm.module if use_distributed else Deformddpm y1_proc, msk_tgt, cond_ratio = ddpm_inner.proc_cond_img(y1,proc_type=proc_type) msk_tgt = msk_tgt+MSK_EPS [ddf_comp,ddf_rand],[img_rec,img_diff,img_save],_ = Deformddpm(img_org=x1, cond_imgs=y1_proc, T=[None, T_regist], proc_type=[],text=embd_y) # forward diffusion process loss_sim = loss_imgsim(img_rec, y1, label=msk_tgt*(y1>thresh_imgsim)) # calculate loss for the registration process loss_mse = loss_imgmse(img_rec, y1, label=msk_tgt*(y1>=0.0)) # calculate loss for the registration process loss_ddf1 = loss_reg1(ddf_comp, img=y1) # calculate loss for the registration process loss_regist = 0 loss_regist += LOSS_WEIGHTS_REGIST[0] * loss_sim loss_regist += LOSS_WEIGHTS_REGIST[1] * loss_mse loss_regist += LOSS_WEIGHTS_REGIST[2] * loss_ddf1 # >> JZ: print nan in x0 if torch.isnan(x0).any(): print(f"*** Encountered NaN in input image x0 at epoch {epoch}, step {step}.") # >> JZ: print loss of ddf if loss_ddf1>0.002: print(f"*** High registration DDF loss at epoch {epoch}, step {step}: {loss_ddf1.item()}.") loss_regist = torch.sqrt(cond_ratio+MSK_EPS) *loss_regist optimizer.zero_grad() loss_regist.backward() torch.nn.utils.clip_grad_norm_(Deformddpm.parameters(), max_norm=0.1) optimizer.step() epoch_loss_regist += loss_regist.item() epoch_loss_imgsim += loss_sim.item() epoch_loss_imgmse += loss_mse.item() epoch_loss_ddfreg += loss_ddf1.item() else: loss_sim = torch.tensor(0.0) loss_mse = torch.tensor(0.0) loss_ddf1 = torch.tensor(0.0) loss_regist = torch.tensor(0.0) if step % REGISTRATION_STEP_RATIO==0: total_reg = total_reg-1 # if step % 50 == 0: # print('step:',step,':', loss_tot.item(),'=',loss_gen_a.item(),'+', loss_gen_d.item(),'+',loss_ddf.item()) # if loss_contra_val is not None: # print(f' loss_contrastive: {loss_contra_val:.6f}') # print(f' loss_regist: {loss_regist} = {loss_sim} (imgsim) + {loss_mse} (imgmse) + {loss_ddf1} (ddf)') if gpu_id == 0: print('==================') print(epoch,':', epoch_loss_tot,'=',epoch_loss_gen_a,'+', epoch_loss_gen_d,'+',epoch_loss_reg, ' (ang+dist+regul)') print(f' loss_contrastive: {epoch_loss_contrastive}') print(f' loss_regist: {epoch_loss_regist/total_reg} = {epoch_loss_imgsim/total_reg} (imgsim) + {epoch_loss_imgmse/total_reg} (imgmse) + {epoch_loss_ddfreg/total_reg} (ddf)') print('==================') if 0 == epoch % epoch_per_save: save_dir=model_save_path + str(epoch).rjust(6, '0') + suffix_pth os.makedirs(os.path.dirname(model_save_path), exist_ok=True) # break # FOR TESTING if not use_distributed: print(f"saved in {save_dir}") # torch.save(Deformddpm.state_dict(), save_dir) torch.save({ 'model_state_dict': Deformddpm.state_dict(), 'optimizer_state_dict': optimizer.state_dict(), 'epoch': epoch }, save_dir) elif gpu_id == 0: print(f"saved in {save_dir}") # torch.save(Deformddpm.module.state_dict(), save_dir) torch.save({ 'model_state_dict': Deformddpm.module.state_dict(), 'optimizer_state_dict': optimizer.state_dict(), 'epoch': epoch }, save_dir) # Resource cleanup at the end of training _empty_cache(DEVICE_TYPE) gc.collect() if use_distributed and dist.is_initialized(): dist.destroy_process_group() def ddp_load_dict(gpu_id, Deformddpm, optimizer, model_file,use_distributed=True, load_strict=False): if gpu_id == 0: # if 0: utils.print_memory_usage("Before Loading Model") gc.collect() _empty_cache(DEVICE_TYPE) # Deformddpm.network.load_state_dict(torch.load(latest_model_file)) # Deformddpm.load_state_dict(torch.load(latest_model_file), strict=False) checkpoint = torch.load(model_file, map_location='cpu') # checkpoint = torch.load(latest_model_file, map_location=f"cuda:{rank}") if use_distributed: Deformddpm.module.load_state_dict(checkpoint['model_state_dict'], strict=load_strict) else: Deformddpm.load_state_dict(checkpoint['model_state_dict'], strict=load_strict) if load_strict: optimizer.load_state_dict(checkpoint['optimizer_state_dict']) utils.print_memory_usage("After Loading Checkpoint on GPU") if use_distributed: # Broadcast model weights from rank 0 to all other GPUs dist.barrier() for param in Deformddpm.parameters(): dist.broadcast(param.data, src=0) # Synchronize model across ranks dist.barrier() for param_group in optimizer.param_groups: for param in param_group['params']: if param.grad is not None: dist.broadcast(param.grad, src=0) # Sync optimizer gradients # initial_epoch = checkpoint['epoch'] + 1 # get the epoch number from the filename and add 1 to set as initial_epoch initial_epoch = int(os.path.basename(model_file).split('.')[0][:6]) + 1 return initial_epoch, Deformddpm, optimizer if __name__ == "__main__": if "LOCAL_RANK" in os.environ: # Multi-node: launched by torchrun / srun use_distributed = True local_rank = int(os.environ["LOCAL_RANK"]) world_size = int(os.environ["WORLD_SIZE"]) print(f"torchrun launch: LOCAL_RANK={local_rank}, RANK={os.environ.get('RANK')}, WORLD_SIZE={world_size}") try: main_train(local_rank, world_size) except Exception as e: import traceback print(f"\n{'='*60}\nRANK {os.environ.get('RANK')} FAILED:\n{'='*60}", flush=True) traceback.print_exc() raise elif use_distributed: # Single-node multi-GPU: use mp.spawn world_size = _device_count(DEVICE_TYPE) print(f"Distributed {DEVICE_TYPE.upper()} device number = {world_size}") mp.spawn(main_train,args = (world_size,),nprocs = world_size) else: main_train(0,1)