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README.md
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| 1 |
+
---
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+
---
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+
license: mit
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+
tags:
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+
- medical-imaging
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+
- pcos-detection
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+
- explainable-ai
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- grad-cam
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- ultrasound
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- tensorflow
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language: en
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metrics:
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- accuracy
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library_name: tensorflow
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---
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+
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# π₯ PCOS Detection with Explainable AI
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A deep learning model for **Polycystic Ovary Syndrome (PCOS)** detection from ultrasound images with **Grad-CAM** visualization for clinical interpretability.
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+
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## π― Model Overview
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| 22 |
+
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+
- **Architecture**: Dual-path CNN with multi-head attention
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+
- **Input**: 224Γ224 RGB ultrasound images
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+
- **Output**: Binary classification (PCOS-positive / Healthy)
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+
- **Accuracy**: ~95%+ on test set
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+
- **XAI**: Grad-CAM heatmaps for interpretability
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+
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+
## π Quick Start
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| 30 |
+
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```bash
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pip install tensorflow opencv-python matplotlib numpy requests huggingface-hub
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```
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+
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### Complete Working Example
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```python
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# ============================================================
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# π PCOS Prediction + Grad-CAM (HF VERSION)
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# ============================================================
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+
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import numpy as np
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import cv2
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import tensorflow as tf
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import matplotlib.pyplot as plt
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from tensorflow.keras import Model, Input
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from tensorflow.keras.layers import (
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Conv2D, MaxPooling2D, Flatten, Dense,
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Lambda, Reshape, Concatenate,
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MultiHeadAttention, GlobalAveragePooling1D
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)
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import requests
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from huggingface_hub import hf_hub_download
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# ============================================================
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# Config
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# ============================================================
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IMG_SIZE = (224, 224)
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HF_MODEL_REPO = "Dehsahk-AI/Pcos-Detect"
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MODEL_FILENAME = "best_pcos_model.h5"
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IMAGE_URL = "https://example.com/ultrasound.jpg" # Your image URL
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CLASS_NAMES = ["infected", "noninfected"]
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# ============================================================
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# Download model from HF
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# ============================================================
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| 67 |
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MODEL_PATH = hf_hub_download(repo_id=HF_MODEL_REPO, filename=MODEL_FILENAME)
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| 68 |
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print(f"β
Model downloaded to: {MODEL_PATH}")
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+
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# ============================================================
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# Custom Lambda Functions
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# ============================================================
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| 73 |
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def split_image(image):
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| 74 |
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upper = image[:, :IMG_SIZE[0]//2, :, :]
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lower = image[:, IMG_SIZE[0]//2:, :, :]
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return upper, lower
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| 77 |
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| 78 |
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def flip_lower(lower_half):
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return tf.image.flip_left_right(lower_half)
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| 80 |
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| 81 |
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# ============================================================
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| 82 |
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# Rebuild Model Architecture
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| 83 |
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# ============================================================
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| 84 |
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input_layer = Input(shape=(224,224,3))
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| 85 |
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| 86 |
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upper_half, lower_half = Lambda(split_image)(input_layer)
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| 87 |
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lower_half = Lambda(flip_lower)(lower_half)
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| 88 |
+
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# Upper CNN
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| 90 |
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u = Conv2D(32, 3, activation="relu", padding="same")(upper_half)
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| 91 |
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u = MaxPooling2D(2)(u)
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u = Conv2D(64, 3, activation="relu", padding="same")(u)
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u = MaxPooling2D(2)(u)
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u = Conv2D(128, 3, activation="relu", padding="same", name="upper_last_conv")(u)
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u = MaxPooling2D(2)(u)
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u = Flatten()(u)
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+
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# Lower CNN
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l = Conv2D(32, 3, activation="relu", padding="same")(lower_half)
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l = MaxPooling2D(2)(l)
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l = Conv2D(64, 3, activation="relu", padding="same")(l)
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l = MaxPooling2D(2)(l)
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l = Conv2D(128, 3, activation="relu", padding="same", name="lower_last_conv")(l)
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l = MaxPooling2D(2)(l)
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l = Flatten()(l)
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u_dense = Dense(512, activation="relu")(u)
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l_dense = Dense(512, activation="relu")(l)
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u_r = Reshape((1,512))(u_dense)
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l_r = Reshape((1,512))(l_dense)
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concat = Concatenate(axis=1)([u_r, l_r])
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att = MultiHeadAttention(num_heads=4, key_dim=64)(concat, concat)
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att = GlobalAveragePooling1D()(att)
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fc = Dense(256, activation="relu")(att)
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fc = Dense(128, activation="relu")(fc)
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# Logits for Grad-CAM
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logits = Dense(2, name="logits")(fc)
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output = tf.keras.layers.Activation('softmax', name='softmax')(logits)
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model = Model(input_layer, output)
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model.load_weights(MODEL_PATH)
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print("β
Weights loaded successfully")
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# ============================================================
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# Load & Preprocess Image
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# ============================================================
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response = requests.get(IMAGE_URL)
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img_array_raw = np.asarray(bytearray(response.content), dtype=np.uint8)
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img = cv2.imdecode(img_array_raw, cv2.IMREAD_COLOR)
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img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
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img = cv2.resize(img, IMG_SIZE)
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img = img.astype(np.float32) / 255.0
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img_array = np.expand_dims(img, axis=0)
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# ============================================================
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# Prediction
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# ============================================================
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pred = model.predict(img_array, verbose=0)[0]
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pred_class = np.argmax(pred)
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confidence = pred[pred_class]
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print(f"\nπ Prediction: {CLASS_NAMES[pred_class]}")
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print(f"π Confidence: {confidence:.2%}")
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# ============================================================
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# Grad-CAM
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# ============================================================
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def gradcam(img_array, model, layer_name, pred_index):
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logits_layer = model.get_layer('logits')
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grad_model = Model(
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model.input,
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[model.get_layer(layer_name).output, logits_layer.output]
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)
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with tf.GradientTape() as tape:
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conv_out, logits = grad_model(img_array)
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loss = logits[:, pred_index]
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grads = tape.gradient(loss, conv_out)
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pooled = tf.reduce_mean(grads, axis=(0,1,2))
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conv_out = conv_out[0]
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heatmap = conv_out @ pooled[..., tf.newaxis]
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heatmap = tf.squeeze(heatmap)
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heatmap = tf.maximum(heatmap, 0)
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if tf.reduce_max(heatmap) > 0:
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heatmap /= tf.reduce_max(heatmap)
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+
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return heatmap.numpy()
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+
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upper = gradcam(img_array, model, "upper_last_conv", pred_class)
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| 178 |
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lower = gradcam(img_array, model, "lower_last_conv", pred_class)
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+
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h = IMG_SIZE[0] // 2
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| 181 |
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upper = cv2.resize(upper, (IMG_SIZE[1], h))
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| 182 |
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lower = cv2.resize(lower, (IMG_SIZE[1], h))
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| 183 |
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lower = cv2.flip(lower, 1)
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heatmap = np.vstack([upper, lower])
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| 186 |
+
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heatmap_color = cv2.applyColorMap(np.uint8(255*heatmap), cv2.COLORMAP_JET)
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| 188 |
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heatmap_color = cv2.cvtColor(heatmap_color, cv2.COLOR_BGR2RGB) / 255.0
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| 189 |
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overlay = 0.5 * heatmap_color + 0.5 * img
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| 191 |
+
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# ============================================================
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# Visualization
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| 194 |
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# ============================================================
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| 195 |
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plt.figure(figsize=(15,5))
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| 196 |
+
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plt.subplot(1,3,1)
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plt.imshow(img)
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plt.title("Original")
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| 200 |
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plt.axis("off")
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plt.subplot(1,3,2)
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| 203 |
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plt.imshow(heatmap, cmap="jet")
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plt.title("Grad-CAM")
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plt.axis("off")
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plt.subplot(1,3,3)
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plt.imshow(overlay)
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plt.title(f"{CLASS_NAMES[pred_class]} ({confidence:.2%})")
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plt.axis("off")
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| 211 |
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plt.tight_layout()
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| 213 |
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plt.show()
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```
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### Load from Local File
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| 217 |
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```python
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# Replace URL loading with:
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| 220 |
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img = cv2.imread('path/to/ultrasound.jpg')
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| 221 |
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img = cv2.cvtColor(img, cv2.COLOR_BGR2RGB)
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img = cv2.resize(img, IMG_SIZE)
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img = img.astype(np.float32) / 255.0
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img_array = np.expand_dims(img, axis=0)
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```
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## π¬ Understanding Grad-CAM Output
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| 228 |
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| 229 |
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- **Red/Hot regions**: High importance for prediction (follicles, cysts)
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- **Blue/Cool regions**: Low influence on decision
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- **Dual visualization**: Separate heatmaps for upper and lower ovarian regions
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## π Model Architecture
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| 234 |
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| 235 |
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```
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| 236 |
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Input (224Γ224Γ3)
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βββ Split horizontally (upper/lower)
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| 238 |
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βββ Upper Path: Conv32 β Conv64 β Conv128 β Dense512
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| 239 |
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βββ Lower Path: Conv32 β Conv64 β Conv128 β Dense512
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βββ Multi-Head Attention (4 heads, dim=64)
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βββ Classification: Dense256 β Dense128 β Dense2
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```
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| 243 |
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**Key Features:**
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| 245 |
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- Dual-path CNN for separate ovarian region analysis
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| 246 |
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- Lower region flipped for symmetry normalization
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| 247 |
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- Multi-head attention for feature fusion
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| 248 |
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- Logits-based Grad-CAM (fixes saturated softmax gradients)
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| 249 |
+
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## π Dataset
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| 251 |
+
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| 252 |
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- **Total**: 11,784 ultrasound images
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| 253 |
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- **PCOS-positive**: 6,784 images (57.5%)
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| 254 |
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- **Healthy**: 5,000 images (42.5%)
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| 255 |
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- **Source**: 3 clinics (2018-2022), expert-annotated
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+
- **Dataset**: [PCOS XAI Ultrasound](https://www.kaggle.com/datasets/...)
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| 257 |
+
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| 258 |
+
## β οΈ Important Notes
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| 259 |
+
|
| 260 |
+
**Clinical Use:**
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| 261 |
+
- β οΈ Research purposes only - NOT FDA approved
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| 262 |
+
- β οΈ Not a diagnostic tool - requires professional validation
|
| 263 |
+
- β οΈ Must be validated on local datasets before clinical deployment
|
| 264 |
+
|
| 265 |
+
**Technical:**
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| 266 |
+
- Fixed 224Γ224 input size required
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| 267 |
+
- RGB images only
|
| 268 |
+
- Model performance may vary across different ultrasound machines
|
| 269 |
+
|
| 270 |
+
## π Citation
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| 271 |
+
|
| 272 |
+
```bibtex
|
| 273 |
+
@misc{pcos_xai_2024,
|
| 274 |
+
title={PCOS Detection with Explainable AI},
|
| 275 |
+
author={Dehsahk-AI},
|
| 276 |
+
year={2024},
|
| 277 |
+
url={https://huggingface.co/Dehsahk-AI/Pcos-Detect}
|
| 278 |
+
}
|
| 279 |
+
```
|
| 280 |
+
|
| 281 |
+
## π License
|
| 282 |
+
|
| 283 |
+
MIT License - See LICENSE file for details.
|
| 284 |
+
|
| 285 |
+
## π Acknowledgments
|
| 286 |
+
|
| 287 |
+
- Grad-CAM: Selvaraju et al. (ICCV 2017)
|
| 288 |
+
- Multi-head Attention: Vaswani et al. (NeurIPS 2017)
|
| 289 |
+
- Dataset from clinical retrospective studies with ethical compliance
|
| 290 |
+
|
| 291 |
+
---
|
| 292 |
+
|
| 293 |
+
**Model Version**: 1.0 | **Last Updated**: December 2024
|
| 294 |
+
license: apache-2.0
|
| 295 |
+
---
|