skinmap_runtime/core/models/utils.py

import collections.abc
import math
import warnings
from enum import Enum
from itertools import repeat

import numpy as np
import torch
from torch import nn


class ModelType(Enum):
    VIT = 0
    CNN = 1
    UNET = 2


def initialize_weights(*models):
    for model in models:
        for module in model.modules():
            if isinstance(module, nn.Conv2d) or isinstance(module, nn.Linear):
                nn.init.kaiming_normal_(module.weight)
                if module.bias is not None:
                    module.bias.data.zero_()
            elif isinstance(module, nn.BatchNorm2d):
                module.weight.data.fill_(1)
                module.bias.data.zero_()


def _no_grad_trunc_normal_(tensor, mean, std, a, b):
    # Cut & paste from PyTorch official master until it's in a few official releases - RW
    # Method based on https://people.sc.fsu.edu/~jburkardt/presentations/truncated_normal.pdf
    def norm_cdf(x):
        # Computes standard normal cumulative distribution function
        return (1.0 + math.erf(x / math.sqrt(2.0))) / 2.0

    if (mean < a - 2 * std) or (mean > b + 2 * std):
        warnings.warn(
            "mean is more than 2 std from [a, b] in nn.init.trunc_normal_. "
            "The distribution of values may be incorrect.",
            stacklevel=2,
        )

    with torch.no_grad():
        # Values are generated by using a truncated uniform distribution and
        # then using the inverse CDF for the normal distribution.
        # Get upper and lower cdf values
        l = norm_cdf((a - mean) / std)
        u = norm_cdf((b - mean) / std)

        # Uniformly fill tensor with values from [l, u], then translate to
        # [2l-1, 2u-1].
        tensor.uniform_(2 * l - 1, 2 * u - 1)

        # Use inverse cdf transform for normal distribution to get truncated
        # standard normal
        tensor.erfinv_()

        # Transform to proper mean, std
        tensor.mul_(std * math.sqrt(2.0))
        tensor.add_(mean)

        # Clamp to ensure it's in the proper range
        tensor.clamp_(min=a, max=b)
        return tensor


def trunc_normal_(tensor, mean=0.0, std=1.0, a=-2.0, b=2.0):
    # type: (Tensor, float, float, float, float) -> Tensor
    return _no_grad_trunc_normal_(tensor, mean, std, a, b)


def get_params_groups(model):
    regularized = []
    not_regularized = []
    for name, param in model.named_parameters():
        if not param.requires_grad:
            continue
        # we do not regularize biases nor Norm parameters
        if name.endswith(".bias") or len(param.shape) == 1:
            not_regularized.append(param)
        else:
            regularized.append(param)
    return [{"params": regularized}, {"params": not_regularized, "weight_decay": 0.0}]


def cosine_scheduler(
    base_value,
    final_value,
    epochs,
    niter_per_ep,
    warmup_epochs=0,
    start_warmup_value=0,
):
    warmup_schedule = np.array([])
    warmup_iters = warmup_epochs * niter_per_ep
    if warmup_epochs > 0:
        warmup_schedule = np.linspace(start_warmup_value, base_value, warmup_iters)

    iters = np.arange(epochs * niter_per_ep - warmup_iters)
    schedule = final_value + 0.5 * (base_value - final_value) * (
        1 + np.cos(np.pi * iters / len(iters))
    )

    schedule = np.concatenate((warmup_schedule, schedule))
    assert len(schedule) == epochs * niter_per_ep
    return schedule


def cancel_gradients_last_layer(epoch, model, freeze_last_layer):
    if epoch >= freeze_last_layer:
        return
    for n, p in model.named_parameters():
        if "last_layer" in n:
            p.grad = None


def drop_path(x, drop_prob: float = 0.0, training: bool = False):
    if drop_prob == 0.0 or not training:
        return x
    keep_prob = 1 - drop_prob
    # work with diff dim tensors, not just 2D ConvNets
    shape = (x.shape[0],) + (1,) * (x.ndim - 1)
    random_tensor = keep_prob + torch.rand(shape, dtype=x.dtype, device=x.device)
    random_tensor.floor_()  # binarize
    output = x.div(keep_prob) * random_tensor
    return output


class DropPath(nn.Module):
    """Drop paths (Stochastic Depth) per sample  (when applied in main path of residual blocks)."""

    def __init__(self, drop_prob=None):
        super(DropPath, self).__init__()
        self.drop_prob = drop_prob

    def forward(self, x):
        return drop_path(x, self.drop_prob, self.training)


# From PyTorch internals
def _ntuple(n):
    def parse(x):
        if isinstance(x, collections.abc.Iterable) and not isinstance(x, str):
            return x
        return tuple(repeat(x, n))

    return parse


to_1tuple = _ntuple(1)
to_2tuple = _ntuple(2)
to_3tuple = _ntuple(3)
to_4tuple = _ntuple(4)
to_ntuple = _ntuple


def ema_update_teacher(student, teacher, momentum_schedule, n_iter):
    # EMA update for the teacher
    with torch.no_grad():
        # momentum parameter
        m = momentum_schedule[n_iter]
        names_q, params_s, names_k, params_t = [], [], [], []
        # get student parameters
        for name_s, param_s in student.named_parameters():
            names_q.append(name_s)
            params_s.append(param_s)
        # get teacher parameters
        for name_t, param_t in teacher.named_parameters():
            names_k.append(name_t)
            params_t.append(param_t)
        # get the names (parameters) which both have in common
        names_common = list(set(names_q) & set(names_k))
        params_s = [
            param_s
            for name_s, param_s in zip(names_q, params_s)
            if name_s in names_common
        ]
        params_t = [
            param_t
            for name_t, param_t in zip(names_k, params_t)
            if name_t in names_common
        ]
        for param_s, param_t in zip(params_s, params_t):
            param_t.data.mul_(m).add_((1 - m) * param_s.detach().data)


# --------------------------------------------------------
# 2D sine-cosine position embedding
# References:
# Transformer: https://github.com/tensorflow/models/blob/master/official/nlp/transformer/model_utils.py
# MoCo v3: https://github.com/facebookresearch/moco-v3
# --------------------------------------------------------
def get_2d_sincos_pos_embed(embed_dim, grid_size, cls_token=False):
    """
    grid_size: int of the grid height and width
    return:
    pos_embed: [grid_size*grid_size, embed_dim] or [1+grid_size*grid_size, embed_dim] (w/ or w/o cls_token)
    """
    grid_h = np.arange(grid_size, dtype=np.float32)
    grid_w = np.arange(grid_size, dtype=np.float32)
    grid = np.meshgrid(grid_w, grid_h)  # here w goes first
    grid = np.stack(grid, axis=0)

    grid = grid.reshape([2, 1, grid_size, grid_size])
    pos_embed = get_2d_sincos_pos_embed_from_grid(embed_dim, grid)
    if cls_token:
        pos_embed = np.concatenate([np.zeros([1, embed_dim]), pos_embed], axis=0)
    return pos_embed


def get_2d_sincos_pos_embed_from_grid(embed_dim, grid):
    assert embed_dim % 2 == 0

    # use half of dimensions to encode grid_h
    emb_h = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[0])  # (H*W, D/2)
    emb_w = get_1d_sincos_pos_embed_from_grid(embed_dim // 2, grid[1])  # (H*W, D/2)

    emb = np.concatenate([emb_h, emb_w], axis=1)  # (H*W, D)
    return emb


def get_1d_sincos_pos_embed_from_grid(embed_dim, pos):
    """
    embed_dim: output dimension for each position
    pos: a list of positions to be encoded: size (M,)
    out: (M, D)
    """
    assert embed_dim % 2 == 0
    omega = np.arange(embed_dim // 2, dtype=np.float32)
    omega /= embed_dim / 2.0
    omega = 1.0 / 10000**omega  # (D/2,)

    pos = pos.reshape(-1)  # (M,)
    out = np.einsum("m,d->md", pos, omega)  # (M, D/2), outer product

    emb_sin = np.sin(out)  # (M, D/2)
    emb_cos = np.cos(out)  # (M, D/2)

    emb = np.concatenate([emb_sin, emb_cos], axis=1)  # (M, D)
    return emb