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Dockerfile
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# Plant DNA Designer — container image for the FastAPI web app.
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# Doubles as the Hugging Face Space image (sdk: docker, app_port: 7860).
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#
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# docker build -t plant-dna-designer .
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# docker run -p 7860:7860 plant-dna-designer # open http://localhost:7860
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#
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FROM python:3.12-slim
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ENV PIP_NO_CACHE_DIR=1 \
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PYTHONUNBUFFERED=1 \
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PYTHONDONTWRITEBYTECODE=1
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WORKDIR /app
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# Core runtime dependencies (must install cleanly; all ship manylinux wheels for
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# cp312, so no compiler is needed). matplotlib/pytest/httpx from requirements.txt
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# are build/test-only and are intentionally excluded from the runtime image.
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RUN pip install \
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"fastapi>=0.139.0" \
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"uvicorn[standard]>=0.50.2" \
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"jinja2>=3.1.6" \
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"pydantic>=2.13.4" \
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"biopython>=1.87" \
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"numpy>=2.5.0"
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# Optional: ViennaRNA gives exact MFE / partition-function folding. The app falls
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# back to a built-in Nussinov estimator when it is absent, so a failure here must
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# NOT break the image — hence the guard.
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RUN pip install "ViennaRNA>=2.7.2" \
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|| echo "ViennaRNA unavailable; falling back to the built-in Nussinov fold."
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# Application code (pure-Python core, API, and no-build web frontend).
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COPY cool/ ./cool/
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WORKDIR /app/cool
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EXPOSE 7860
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CMD ["python", "-m", "uvicorn", "api.main:app", "--host", "0.0.0.0", "--port", "7860"]
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