Einae commited on
Commit
1512f44
·
verified ·
1 Parent(s): 983d37d

Update model - Task: default

Browse files
Files changed (3) hide show
  1. EdgePredMolecularEncoder.pt +3 -0
  2. README.md +72 -0
  3. config.json +541 -0
EdgePredMolecularEncoder.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4a5b17e36562a845e53b3a426721459878a4869cd16a4c67dfb4021d8b3342bd
3
+ size 13519303
README.md ADDED
@@ -0,0 +1,72 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ tags:
3
+ - torch_molecule
4
+ library_name: torch_molecule
5
+ ---
6
+
7
+ # EdgePredMolecularEncoder Model
8
+
9
+ ## Model Description
10
+ - **Model Type**: EdgePredMolecularEncoder
11
+ - **Framework**: torch_molecule
12
+ - **Last Updated**: 2025-04-03
13
+
14
+ ## Task Summary
15
+ | Task | Version | Last Updated | Parameters | Metrics |
16
+ |------|---------|--------------|------------|----------|
17
+ | default | 0.0.1 | 2025-04-03 | 3,340,505 | |
18
+
19
+
20
+ ## Usage
21
+
22
+ ```python
23
+ from torch_molecule import EdgePredMolecularEncoder
24
+
25
+ # Load model for specific task
26
+ model = EdgePredMolecularEncoder()
27
+ model.load(
28
+ "local_model_dir/EdgePredMolecularEncoder.pt",
29
+ repo="Einae/EdgePred"
30
+ )
31
+
32
+ # For predictor: Make predictions
33
+ # predictions = model.predict(smiles_list)
34
+ # For generator: Make generations
35
+ # generations = model.generate(n_samples)
36
+ # For encoder: Make encodings
37
+ # encodings = model.encode(smiles_list)
38
+ ```
39
+
40
+ ## Tasks Details
41
+
42
+
43
+ ### default Task
44
+ - **Current Version**: 0.0.1
45
+ - **Last Updated**: 2025-04-03
46
+ - **Parameters**: 3,340,505
47
+ - **Configuration**:
48
+ ```python
49
+ {
50
+ "encoder_type": "gin-virtual",
51
+ "readout": "sum",
52
+ "num_layer": 5,
53
+ "hidden_size": 300,
54
+ "drop_ratio": 0.5,
55
+ "norm_layer": "batch_norm",
56
+ "batch_size": 128,
57
+ "epochs": 500,
58
+ "learning_rate": 0.001,
59
+ "weight_decay": 0.0,
60
+ "grad_clip_value": null,
61
+ "use_lr_scheduler": false,
62
+ "scheduler_factor": 0.5,
63
+ "scheduler_patience": 5,
64
+ "fitting_epoch": 499,
65
+ "device": {
66
+ "_type": "unknown",
67
+ "repr": "cpu"
68
+ },
69
+ "verbose": false,
70
+ "model_name": "EdgePredMolecularEncoder"
71
+ }
72
+ ```
config.json ADDED
@@ -0,0 +1,541 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "model_name": "EdgePredMolecularEncoder",
3
+ "framework": "torch_molecule",
4
+ "date_created": "2025-04-03T11:36:36.524305",
5
+ "tasks": {
6
+ "default": {
7
+ "versions": [],
8
+ "current_version": "0.0.1",
9
+ "date_added": "2025-04-03T11:36:36.524557",
10
+ "last_updated": "2025-04-03T11:36:36.524563",
11
+ "num_parameters": 3340505,
12
+ "config": {
13
+ "encoder_type": "gin-virtual",
14
+ "readout": "sum",
15
+ "num_layer": 5,
16
+ "hidden_size": 300,
17
+ "drop_ratio": 0.5,
18
+ "norm_layer": "batch_norm",
19
+ "batch_size": 128,
20
+ "epochs": 500,
21
+ "learning_rate": 0.001,
22
+ "weight_decay": 0.0,
23
+ "grad_clip_value": null,
24
+ "use_lr_scheduler": false,
25
+ "scheduler_factor": 0.5,
26
+ "scheduler_patience": 5,
27
+ "fitting_epoch": 499,
28
+ "fitting_loss": [
29
+ 23323.2890625,
30
+ 21927.150390625,
31
+ 22441.453125,
32
+ 21692.28125,
33
+ 21241.630859375,
34
+ 22437.546875,
35
+ 21970.79296875,
36
+ 20954.333984375,
37
+ 21985.115234375,
38
+ 21175.57421875,
39
+ 21774.1796875,
40
+ 21486.357421875,
41
+ 20740.09765625,
42
+ 21187.591796875,
43
+ 21690.203125,
44
+ 21714.97265625,
45
+ 21459.912109375,
46
+ 20528.357421875,
47
+ 20366.185546875,
48
+ 23046.865234375,
49
+ 22264.423828125,
50
+ 20860.970703125,
51
+ 22208.111328125,
52
+ 23130.208984375,
53
+ 23305.966796875,
54
+ 19999.6015625,
55
+ 23427.8359375,
56
+ 20586.265625,
57
+ 21204.453125,
58
+ 20258.873046875,
59
+ 21693.1953125,
60
+ 21918.384765625,
61
+ 21275.490234375,
62
+ 22251.251953125,
63
+ 22021.947265625,
64
+ 22555.8671875,
65
+ 21649.779296875,
66
+ 22495.654296875,
67
+ 21631.83203125,
68
+ 19611.9765625,
69
+ 19549.67578125,
70
+ 19725.138671875,
71
+ 20235.025390625,
72
+ 22960.103515625,
73
+ 21227.3671875,
74
+ 19450.44921875,
75
+ 22447.03125,
76
+ 20241.13671875,
77
+ 20828.83203125,
78
+ 20853.15625,
79
+ 18028.802734375,
80
+ 23357.30859375,
81
+ 22490.708984375,
82
+ 22660.62109375,
83
+ 22425.185546875,
84
+ 20449.994140625,
85
+ 20129.849609375,
86
+ 22239.439453125,
87
+ 20417.6796875,
88
+ 20969.82421875,
89
+ 21012.78125,
90
+ 20275.177734375,
91
+ 19666.46875,
92
+ 20750.970703125,
93
+ 19418.55859375,
94
+ 19757.283203125,
95
+ 20915.701171875,
96
+ 21229.51953125,
97
+ 22460.7890625,
98
+ 21664.31640625,
99
+ 20923.443359375,
100
+ 22245.880859375,
101
+ 20105.638671875,
102
+ 21394.92578125,
103
+ 24401.275390625,
104
+ 20204.822265625,
105
+ 21130.283203125,
106
+ 19965.591796875,
107
+ 19916.35546875,
108
+ 19200.099609375,
109
+ 20249.314453125,
110
+ 20690.208984375,
111
+ 20249.5390625,
112
+ 21775.041015625,
113
+ 19226.490234375,
114
+ 21688.12890625,
115
+ 19939.498046875,
116
+ 22428.216796875,
117
+ 18193.078125,
118
+ 20748.578125,
119
+ 20999.2109375,
120
+ 22627.041015625,
121
+ 20623.357421875,
122
+ 21473.611328125,
123
+ 19651.078125,
124
+ 21121.798828125,
125
+ 20570.1171875,
126
+ 21379.15625,
127
+ 19396.2265625,
128
+ 20964.26171875,
129
+ 20540.96484375,
130
+ 18224.419921875,
131
+ 18812.927734375,
132
+ 21063.791015625,
133
+ 21796.90625,
134
+ 20239.740234375,
135
+ 19441.27734375,
136
+ 21171.705078125,
137
+ 19051.484375,
138
+ 20226.6796875,
139
+ 20066.837890625,
140
+ 19853.25,
141
+ 20926.751953125,
142
+ 21118.220703125,
143
+ 20909.75390625,
144
+ 20672.734375,
145
+ 19666.619140625,
146
+ 20209.58984375,
147
+ 20514.1171875,
148
+ 20529.361328125,
149
+ 20054.71484375,
150
+ 20322.419921875,
151
+ 19222.431640625,
152
+ 21152.505859375,
153
+ 22183.166015625,
154
+ 19305.80078125,
155
+ 19274.099609375,
156
+ 20665.923828125,
157
+ 18284.392578125,
158
+ 21646.4765625,
159
+ 20612.53515625,
160
+ 19598.802734375,
161
+ 19038.09765625,
162
+ 18225.732421875,
163
+ 17206.630859375,
164
+ 19636.20703125,
165
+ 19747.44921875,
166
+ 19474.828125,
167
+ 18323.5234375,
168
+ 20283.099609375,
169
+ 20836.08203125,
170
+ 20870.916015625,
171
+ 20747.107421875,
172
+ 19089.3671875,
173
+ 19975.9921875,
174
+ 19983.783203125,
175
+ 18137.044921875,
176
+ 19641.48046875,
177
+ 19774.427734375,
178
+ 21089.26171875,
179
+ 18446.431640625,
180
+ 20861.88671875,
181
+ 19876.662109375,
182
+ 19939.87890625,
183
+ 20545.75390625,
184
+ 20003.458984375,
185
+ 21057.193359375,
186
+ 17287.220703125,
187
+ 19578.853515625,
188
+ 18608.212890625,
189
+ 19994.599609375,
190
+ 19168.091796875,
191
+ 20953.974609375,
192
+ 20126.087890625,
193
+ 19084.91796875,
194
+ 18739.8515625,
195
+ 20012.279296875,
196
+ 18494.263671875,
197
+ 20915.451171875,
198
+ 20710.712890625,
199
+ 19321.16796875,
200
+ 20282.39453125,
201
+ 20097.931640625,
202
+ 19993.357421875,
203
+ 18649.583984375,
204
+ 21555.861328125,
205
+ 17855.71484375,
206
+ 20467.369140625,
207
+ 18041.02734375,
208
+ 17926.396484375,
209
+ 19462.119140625,
210
+ 19620.423828125,
211
+ 16178.404296875,
212
+ 16153.55859375,
213
+ 19179.74609375,
214
+ 19988.01171875,
215
+ 20391.439453125,
216
+ 17938.255859375,
217
+ 18469.78125,
218
+ 18993.111328125,
219
+ 19972.357421875,
220
+ 19338.74609375,
221
+ 20898.27734375,
222
+ 19471.4453125,
223
+ 17829.7421875,
224
+ 18013.212890625,
225
+ 20637.50390625,
226
+ 18086.765625,
227
+ 19371.435546875,
228
+ 19349.326171875,
229
+ 19690.29296875,
230
+ 18030.771484375,
231
+ 17692.41015625,
232
+ 18304.564453125,
233
+ 18888.359375,
234
+ 18715.404296875,
235
+ 19754.423828125,
236
+ 18096.46484375,
237
+ 16847.591796875,
238
+ 18027.193359375,
239
+ 20192.08984375,
240
+ 19993.01171875,
241
+ 19867.515625,
242
+ 19025.115234375,
243
+ 18715.89453125,
244
+ 16914.189453125,
245
+ 18784.052734375,
246
+ 18758.5703125,
247
+ 19441.251953125,
248
+ 18655.974609375,
249
+ 18517.798828125,
250
+ 19392.236328125,
251
+ 16618.25,
252
+ 16681.220703125,
253
+ 19211.712890625,
254
+ 17901.162109375,
255
+ 20016.34375,
256
+ 16902.8515625,
257
+ 18122.103515625,
258
+ 17988.888671875,
259
+ 16165.94921875,
260
+ 18280.265625,
261
+ 19003.861328125,
262
+ 19080.03515625,
263
+ 19341.509765625,
264
+ 18084.072265625,
265
+ 17569.00390625,
266
+ 17996.744140625,
267
+ 19790.255859375,
268
+ 19031.80859375,
269
+ 17183.544921875,
270
+ 20076.44921875,
271
+ 18595.138671875,
272
+ 19348.0703125,
273
+ 15060.7978515625,
274
+ 16654.921875,
275
+ 19370.14453125,
276
+ 18658.537109375,
277
+ 17681.44140625,
278
+ 20076.443359375,
279
+ 19126.673828125,
280
+ 17719.869140625,
281
+ 18226.322265625,
282
+ 17910.623046875,
283
+ 18967.66796875,
284
+ 16930.873046875,
285
+ 18579.193359375,
286
+ 18981.662109375,
287
+ 16290.0458984375,
288
+ 18688.751953125,
289
+ 18477.048828125,
290
+ 19289.283203125,
291
+ 17813.1953125,
292
+ 18429.25,
293
+ 18227.76171875,
294
+ 18415.693359375,
295
+ 17798.798828125,
296
+ 18036.69921875,
297
+ 18210.59375,
298
+ 19295.05078125,
299
+ 18668.77734375,
300
+ 18054.91796875,
301
+ 17622.865234375,
302
+ 17366.435546875,
303
+ 16999.40625,
304
+ 17154.08984375,
305
+ 17629.33203125,
306
+ 17066.7265625,
307
+ 17279.3671875,
308
+ 17299.515625,
309
+ 17047.431640625,
310
+ 17783.42578125,
311
+ 16044.2763671875,
312
+ 17913.638671875,
313
+ 17661.5859375,
314
+ 17207.361328125,
315
+ 17981.185546875,
316
+ 17477.2109375,
317
+ 16578.34375,
318
+ 17575.123046875,
319
+ 17537.67578125,
320
+ 18489.48828125,
321
+ 17660.990234375,
322
+ 18183.75,
323
+ 17372.298828125,
324
+ 17787.099609375,
325
+ 16058.669921875,
326
+ 16449.3046875,
327
+ 18044.453125,
328
+ 15588.0908203125,
329
+ 16015.6201171875,
330
+ 18785.46484375,
331
+ 17301.908203125,
332
+ 17995.556640625,
333
+ 15949.501953125,
334
+ 16944.814453125,
335
+ 17979.599609375,
336
+ 16764.115234375,
337
+ 17401.482421875,
338
+ 18310.15625,
339
+ 16914.25,
340
+ 18131.5390625,
341
+ 18555.669921875,
342
+ 18252.228515625,
343
+ 16849.17578125,
344
+ 18072.234375,
345
+ 17895.37890625,
346
+ 17027.830078125,
347
+ 17723.17578125,
348
+ 17187.49609375,
349
+ 18208.29296875,
350
+ 16315.90234375,
351
+ 17849.19921875,
352
+ 17891.10546875,
353
+ 16068.3896484375,
354
+ 16700.62890625,
355
+ 18451.25390625,
356
+ 17623.25,
357
+ 17065.740234375,
358
+ 16915.78125,
359
+ 16491.47265625,
360
+ 17093.080078125,
361
+ 15616.7822265625,
362
+ 15949.6591796875,
363
+ 17119.09375,
364
+ 18425.59375,
365
+ 17006.453125,
366
+ 15868.970703125,
367
+ 16860.95703125,
368
+ 15747.1396484375,
369
+ 16412.099609375,
370
+ 18183.318359375,
371
+ 19019.091796875,
372
+ 14906.66796875,
373
+ 17788.990234375,
374
+ 15350.4892578125,
375
+ 17427.904296875,
376
+ 18082.291015625,
377
+ 15063.19921875,
378
+ 15048.4443359375,
379
+ 16246.603515625,
380
+ 14772.11328125,
381
+ 16445.685546875,
382
+ 15768.0205078125,
383
+ 16358.3154296875,
384
+ 17681.658203125,
385
+ 17308.84765625,
386
+ 17295.716796875,
387
+ 17728.2109375,
388
+ 16610.2109375,
389
+ 16847.375,
390
+ 18269.126953125,
391
+ 16857.154296875,
392
+ 15055.7119140625,
393
+ 19623.91015625,
394
+ 15937.43359375,
395
+ 15516.13671875,
396
+ 16190.8779296875,
397
+ 15416.92578125,
398
+ 16985.208984375,
399
+ 16921.220703125,
400
+ 17300.794921875,
401
+ 15479.494140625,
402
+ 18104.369140625,
403
+ 16400.1875,
404
+ 17065.1953125,
405
+ 16119.4482421875,
406
+ 16114.8232421875,
407
+ 15354.4716796875,
408
+ 16733.486328125,
409
+ 16527.4375,
410
+ 16195.5615234375,
411
+ 17606.21875,
412
+ 16151.095703125,
413
+ 15025.8701171875,
414
+ 16529.923828125,
415
+ 15519.34765625,
416
+ 15111.7265625,
417
+ 16445.81640625,
418
+ 16900.626953125,
419
+ 15420.001953125,
420
+ 16655.626953125,
421
+ 18130.771484375,
422
+ 15763.60546875,
423
+ 16677.158203125,
424
+ 16428.49609375,
425
+ 15890.5478515625,
426
+ 14969.064453125,
427
+ 16329.63671875,
428
+ 16251.6171875,
429
+ 15644.6181640625,
430
+ 15892.689453125,
431
+ 15118.7333984375,
432
+ 15346.431640625,
433
+ 17424.90234375,
434
+ 13661.255859375,
435
+ 18196.611328125,
436
+ 17322.8984375,
437
+ 14793.6279296875,
438
+ 16405.80859375,
439
+ 16698.212890625,
440
+ 14198.6337890625,
441
+ 15218.5,
442
+ 14982.4443359375,
443
+ 16954.486328125,
444
+ 17387.90625,
445
+ 15176.8720703125,
446
+ 16340.912109375,
447
+ 15386.57421875,
448
+ 15583.1474609375,
449
+ 15402.486328125,
450
+ 14943.447265625,
451
+ 15457.1962890625,
452
+ 17138.974609375,
453
+ 16236.4208984375,
454
+ 15960.5673828125,
455
+ 16007.923828125,
456
+ 16691.81640625,
457
+ 17311.91015625,
458
+ 16229.7412109375,
459
+ 16407.880859375,
460
+ 15869.44140625,
461
+ 17167.47265625,
462
+ 17517.078125,
463
+ 15382.2041015625,
464
+ 14989.1787109375,
465
+ 15103.4423828125,
466
+ 14790.7734375,
467
+ 15568.826171875,
468
+ 14947.544921875,
469
+ 16397.138671875,
470
+ 15054.3095703125,
471
+ 16051.6435546875,
472
+ 16222.373046875,
473
+ 13832.0751953125,
474
+ 16203.6044921875,
475
+ 16263.9404296875,
476
+ 16340.6591796875,
477
+ 15705.7841796875,
478
+ 16662.98828125,
479
+ 16150.9345703125,
480
+ 15547.4599609375,
481
+ 16069.197265625,
482
+ 15891.12109375,
483
+ 17945.966796875,
484
+ 16045.40234375,
485
+ 13770.8408203125,
486
+ 16609.873046875,
487
+ 16238.1708984375,
488
+ 14842.2998046875,
489
+ 17370.5859375,
490
+ 16171.07421875,
491
+ 13285.2685546875,
492
+ 15765.994140625,
493
+ 16552.015625,
494
+ 14159.6279296875,
495
+ 15209.5126953125,
496
+ 16850.798828125,
497
+ 15410.8037109375,
498
+ 15861.0576171875,
499
+ 16001.189453125,
500
+ 17217.091796875,
501
+ 16064.7197265625,
502
+ 15534.4130859375,
503
+ 16036.8701171875,
504
+ 18149.38671875,
505
+ 14472.009765625,
506
+ 14321.9609375,
507
+ 14136.357421875,
508
+ 15023.349609375,
509
+ 14476.537109375,
510
+ 14444.7900390625,
511
+ 15820.001953125,
512
+ 14135.7060546875,
513
+ 16595.181640625,
514
+ 15212.2919921875,
515
+ 16687.55859375,
516
+ 15159.994140625,
517
+ 16515.212890625,
518
+ 13731.4814453125,
519
+ 14502.3193359375,
520
+ 15095.654296875,
521
+ 16579.669921875,
522
+ 14200.369140625,
523
+ 14895.6728515625,
524
+ 16455.611328125,
525
+ 16521.552734375,
526
+ 14527.01171875,
527
+ 14502.1484375,
528
+ 14462.0498046875
529
+ ],
530
+ "device": {
531
+ "_type": "unknown",
532
+ "repr": "cpu"
533
+ },
534
+ "verbose": false,
535
+ "model_name": "EdgePredMolecularEncoder"
536
+ },
537
+ "metrics": {}
538
+ }
539
+ },
540
+ "last_updated": "2025-04-03T11:36:36.524565"
541
+ }