Update README.md
Browse files
README.md
CHANGED
|
@@ -1,199 +1,43 @@
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
| 3 |
-
tags: []
|
| 4 |
---
|
|
|
|
| 5 |
|
| 6 |
-
|
| 7 |
|
| 8 |
-
|
|
|
|
| 9 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 10 |
|
|
|
|
| 11 |
|
| 12 |
-
##
|
|
|
|
|
|
|
|
|
|
|
|
|
| 13 |
|
| 14 |
-
|
|
|
|
| 15 |
|
| 16 |
-
|
|
|
|
|
|
|
| 17 |
|
| 18 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 19 |
|
| 20 |
-
|
| 21 |
-
-
|
| 22 |
-
- **Shared by [optional]:** [More Information Needed]
|
| 23 |
-
- **Model type:** [More Information Needed]
|
| 24 |
-
- **Language(s) (NLP):** [More Information Needed]
|
| 25 |
-
- **License:** [More Information Needed]
|
| 26 |
-
- **Finetuned from model [optional]:** [More Information Needed]
|
| 27 |
|
| 28 |
-
|
| 29 |
-
|
| 30 |
-
<!-- Provide the basic links for the model. -->
|
| 31 |
-
|
| 32 |
-
- **Repository:** [More Information Needed]
|
| 33 |
-
- **Paper [optional]:** [More Information Needed]
|
| 34 |
-
- **Demo [optional]:** [More Information Needed]
|
| 35 |
-
|
| 36 |
-
## Uses
|
| 37 |
-
|
| 38 |
-
<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
|
| 39 |
-
|
| 40 |
-
### Direct Use
|
| 41 |
-
|
| 42 |
-
<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
|
| 43 |
-
|
| 44 |
-
[More Information Needed]
|
| 45 |
-
|
| 46 |
-
### Downstream Use [optional]
|
| 47 |
-
|
| 48 |
-
<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
|
| 49 |
-
|
| 50 |
-
[More Information Needed]
|
| 51 |
-
|
| 52 |
-
### Out-of-Scope Use
|
| 53 |
-
|
| 54 |
-
<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
|
| 55 |
-
|
| 56 |
-
[More Information Needed]
|
| 57 |
-
|
| 58 |
-
## Bias, Risks, and Limitations
|
| 59 |
-
|
| 60 |
-
<!-- This section is meant to convey both technical and sociotechnical limitations. -->
|
| 61 |
-
|
| 62 |
-
[More Information Needed]
|
| 63 |
-
|
| 64 |
-
### Recommendations
|
| 65 |
-
|
| 66 |
-
<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
|
| 67 |
-
|
| 68 |
-
Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
|
| 69 |
-
|
| 70 |
-
## How to Get Started with the Model
|
| 71 |
-
|
| 72 |
-
Use the code below to get started with the model.
|
| 73 |
-
|
| 74 |
-
[More Information Needed]
|
| 75 |
-
|
| 76 |
-
## Training Details
|
| 77 |
-
|
| 78 |
-
### Training Data
|
| 79 |
-
|
| 80 |
-
<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
|
| 81 |
-
|
| 82 |
-
[More Information Needed]
|
| 83 |
-
|
| 84 |
-
### Training Procedure
|
| 85 |
-
|
| 86 |
-
<!-- This relates heavily to the Technical Specifications. Content here should link to that section when it is relevant to the training procedure. -->
|
| 87 |
-
|
| 88 |
-
#### Preprocessing [optional]
|
| 89 |
-
|
| 90 |
-
[More Information Needed]
|
| 91 |
-
|
| 92 |
-
|
| 93 |
-
#### Training Hyperparameters
|
| 94 |
-
|
| 95 |
-
- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
|
| 96 |
-
|
| 97 |
-
#### Speeds, Sizes, Times [optional]
|
| 98 |
-
|
| 99 |
-
<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
|
| 100 |
-
|
| 101 |
-
[More Information Needed]
|
| 102 |
-
|
| 103 |
-
## Evaluation
|
| 104 |
-
|
| 105 |
-
<!-- This section describes the evaluation protocols and provides the results. -->
|
| 106 |
-
|
| 107 |
-
### Testing Data, Factors & Metrics
|
| 108 |
-
|
| 109 |
-
#### Testing Data
|
| 110 |
-
|
| 111 |
-
<!-- This should link to a Dataset Card if possible. -->
|
| 112 |
-
|
| 113 |
-
[More Information Needed]
|
| 114 |
-
|
| 115 |
-
#### Factors
|
| 116 |
-
|
| 117 |
-
<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
|
| 118 |
-
|
| 119 |
-
[More Information Needed]
|
| 120 |
-
|
| 121 |
-
#### Metrics
|
| 122 |
-
|
| 123 |
-
<!-- These are the evaluation metrics being used, ideally with a description of why. -->
|
| 124 |
-
|
| 125 |
-
[More Information Needed]
|
| 126 |
-
|
| 127 |
-
### Results
|
| 128 |
-
|
| 129 |
-
[More Information Needed]
|
| 130 |
-
|
| 131 |
-
#### Summary
|
| 132 |
-
|
| 133 |
-
|
| 134 |
-
|
| 135 |
-
## Model Examination [optional]
|
| 136 |
-
|
| 137 |
-
<!-- Relevant interpretability work for the model goes here -->
|
| 138 |
-
|
| 139 |
-
[More Information Needed]
|
| 140 |
-
|
| 141 |
-
## Environmental Impact
|
| 142 |
-
|
| 143 |
-
<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
|
| 144 |
-
|
| 145 |
-
Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
|
| 146 |
-
|
| 147 |
-
- **Hardware Type:** [More Information Needed]
|
| 148 |
-
- **Hours used:** [More Information Needed]
|
| 149 |
-
- **Cloud Provider:** [More Information Needed]
|
| 150 |
-
- **Compute Region:** [More Information Needed]
|
| 151 |
-
- **Carbon Emitted:** [More Information Needed]
|
| 152 |
-
|
| 153 |
-
## Technical Specifications [optional]
|
| 154 |
-
|
| 155 |
-
### Model Architecture and Objective
|
| 156 |
-
|
| 157 |
-
[More Information Needed]
|
| 158 |
-
|
| 159 |
-
### Compute Infrastructure
|
| 160 |
-
|
| 161 |
-
[More Information Needed]
|
| 162 |
-
|
| 163 |
-
#### Hardware
|
| 164 |
-
|
| 165 |
-
[More Information Needed]
|
| 166 |
-
|
| 167 |
-
#### Software
|
| 168 |
-
|
| 169 |
-
[More Information Needed]
|
| 170 |
-
|
| 171 |
-
## Citation [optional]
|
| 172 |
-
|
| 173 |
-
<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
|
| 174 |
-
|
| 175 |
-
**BibTeX:**
|
| 176 |
-
|
| 177 |
-
[More Information Needed]
|
| 178 |
-
|
| 179 |
-
**APA:**
|
| 180 |
-
|
| 181 |
-
[More Information Needed]
|
| 182 |
-
|
| 183 |
-
## Glossary [optional]
|
| 184 |
-
|
| 185 |
-
<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
|
| 186 |
-
|
| 187 |
-
[More Information Needed]
|
| 188 |
-
|
| 189 |
-
## More Information [optional]
|
| 190 |
-
|
| 191 |
-
[More Information Needed]
|
| 192 |
-
|
| 193 |
-
## Model Card Authors [optional]
|
| 194 |
-
|
| 195 |
-
[More Information Needed]
|
| 196 |
-
|
| 197 |
-
## Model Card Contact
|
| 198 |
-
|
| 199 |
-
[More Information Needed]
|
|
|
|
| 1 |
---
|
| 2 |
library_name: transformers
|
|
|
|
| 3 |
---
|
| 4 |
+
# Fine-tuned Vision Transformer for Alzheimer's Detection
|
| 5 |
|
| 6 |
+
This repository hosts a Vision Transformer (ViT) model fine-tuned on the OASIS MRI dataset for the classification of brain MRI images based on the progression of Alzheimer's disease. The model categorizes images into four classes: demented, very mild demented, mild demented, and non-demented.
|
| 7 |
|
| 8 |
+
## Model Description
|
| 9 |
+
The Vision Transformer has been adapted to tackle the challenging task of medical image analysis by leveraging its powerful attention mechanisms that capture complex patterns in image data. It has been fine-tuned to classify MRI images into stages of Alzheimer's disease, demonstrating the model's applicability to medical diagnostics.
|
| 10 |
|
| 11 |
+
## Dataset
|
| 12 |
+
The OASIS MRI dataset consists of 80,000 brain MRI images from 461 patients, formatted in Nifti (.nii) and converted to JPEG for model training. The images represent various stages of Alzheimer's disease as follows:
|
| 13 |
+
- Non-Demented
|
| 14 |
+
- Very Mild Demented
|
| 15 |
+
- Mild Demented
|
| 16 |
+
- Demented
|
| 17 |
|
| 18 |
+
This dataset conversion involved standardizing image formats for machine learning applications, ensuring that each image is suitable for deep learning models.
|
| 19 |
|
| 20 |
+
## Preprocessing Techniques
|
| 21 |
+
During preprocessing:
|
| 22 |
+
- MRI scans were converted from Nifti format to JPEG to simplify handling and reduce storage requirements.
|
| 23 |
+
- Each image was resized to 128x128 pixels, ensuring uniformity across the dataset.
|
| 24 |
+
- Pixel values were normalized to a [0, 1] scale to facilitate model training.
|
| 25 |
|
| 26 |
+
## How to Use This Model
|
| 27 |
+
You can use this model directly with a pipeline for image classification:
|
| 28 |
|
| 29 |
+
\`\`\`python
|
| 30 |
+
from transformers import pipeline
|
| 31 |
+
classifier = pipeline('image-classification', model='your_hf_username/your_model_name')
|
| 32 |
|
| 33 |
+
# To classify an image:
|
| 34 |
+
image_path = 'path_to_your_image.jpg'
|
| 35 |
+
prediction = classifier(image_path)
|
| 36 |
+
print(prediction)
|
| 37 |
+
\`\`\`
|
| 38 |
|
| 39 |
+
## Training Procedure
|
| 40 |
+
The model was trained using the AdamW optimizer with a learning rate of 5e-5 for 10 epochs, balancing the need for accuracy with the risk of overfitting.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 41 |
|
| 42 |
+
## Evaluation Results
|
| 43 |
+
Upon evaluation on a validation set, the model achieved an accuracy of 99%, showcasing its effectiveness in identifying different stages of Alzheimer's disease based on MRI scans.
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|