Add release configuration and document download statistics
Browse files- README.md +8 -0
- config.json +135 -0
README.md
CHANGED
|
@@ -10,6 +10,7 @@ The released inference bundle is available in [weights/](https://huggingface.co/
|
|
| 10 |
|
| 11 |
| File | Purpose |
|
| 12 |
|---|---|
|
|
|
|
| 13 |
| `weights/la_ribo_base.pt` | Base flow model, exported EMA weights |
|
| 14 |
| `weights/la_ribo_tri.pt` | Tri flow model, exported EMA weights |
|
| 15 |
| `weights/la_ribo_vae.pt` | Shared autoencoder weights |
|
|
@@ -24,6 +25,7 @@ Run this from the local [La-Ribo inference repository](https://github.com/GENTEL
|
|
| 24 |
|
| 25 |
```bash
|
| 26 |
uvx --from huggingface_hub hf download GENTEL-Lab/La-Ribo \
|
|
|
|
| 27 |
weights/la_ribo_base.pt \
|
| 28 |
weights/la_ribo_tri.pt \
|
| 29 |
weights/la_ribo_vae.pt \
|
|
@@ -34,6 +36,12 @@ uvx --from huggingface_hub hf download GENTEL-Lab/La-Ribo \
|
|
| 34 |
|
| 35 |
Both variants use the shared autoencoder and both statistics files. Choose `config/la-ribo-base.yaml` with `la_ribo_base.pt`, or `config/la-ribo-tri.yaml` with `la_ribo_tri.pt`. Installation and CPU/CUDA inference commands are in the [GitHub README](https://github.com/GENTEL-lab/La-Ribo#readme). The default sampling protocol uses 200 steps and scaffold/latent powers 1.25/2.0.
|
| 36 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 37 |
The data below are optional for inference.
|
| 38 |
|
| 39 |
## Data
|
|
|
|
| 10 |
|
| 11 |
| File | Purpose |
|
| 12 |
|---|---|
|
| 13 |
+
| `config.json` | Release configuration and model-bundle file map |
|
| 14 |
| `weights/la_ribo_base.pt` | Base flow model, exported EMA weights |
|
| 15 |
| `weights/la_ribo_tri.pt` | Tri flow model, exported EMA weights |
|
| 16 |
| `weights/la_ribo_vae.pt` | Shared autoencoder weights |
|
|
|
|
| 25 |
|
| 26 |
```bash
|
| 27 |
uvx --from huggingface_hub hf download GENTEL-Lab/La-Ribo \
|
| 28 |
+
config.json \
|
| 29 |
weights/la_ribo_base.pt \
|
| 30 |
weights/la_ribo_tri.pt \
|
| 31 |
weights/la_ribo_vae.pt \
|
|
|
|
| 36 |
|
| 37 |
Both variants use the shared autoencoder and both statistics files. Choose `config/la-ribo-base.yaml` with `la_ribo_base.pt`, or `config/la-ribo-tri.yaml` with `la_ribo_tri.pt`. Installation and CPU/CUDA inference commands are in the [GitHub README](https://github.com/GENTEL-lab/La-Ribo#readme). The default sampling protocol uses 200 steps and scaffold/latent powers 1.25/2.0.
|
| 38 |
|
| 39 |
+
`config.json` describes the released variants, weight files, architecture dimensions, and default sampling settings. It contains public inference configuration only.
|
| 40 |
+
|
| 41 |
+
### Download statistics
|
| 42 |
+
|
| 43 |
+
Hugging Face uses access to the root `config.json` as the default download-counting signal for this model repository. The command above includes that file. Direct downloads of only `.pt` files or files under `data/` do not trigger this default model counter. HF counts matching GET/HEAD requests server-side; the displayed value is not a count of unique users or guaranteed completed weight transfers. See the [official counting rules](https://huggingface.co/docs/hub/models-download-stats).
|
| 44 |
+
|
| 45 |
The data below are optional for inference.
|
| 46 |
|
| 47 |
## Data
|
config.json
ADDED
|
@@ -0,0 +1,135 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"format": "la-ribo-inference-bundle",
|
| 3 |
+
"format_version": 1,
|
| 4 |
+
"code_repository": "https://github.com/GENTEL-lab/La-Ribo",
|
| 5 |
+
"paper": "https://arxiv.org/abs/2610.12236",
|
| 6 |
+
"checkpoint_format": "pytorch_state_dict",
|
| 7 |
+
"variants": {
|
| 8 |
+
"base": {
|
| 9 |
+
"checkpoint": "weights/la_ribo_base.pt",
|
| 10 |
+
"weights": "ema",
|
| 11 |
+
"inference_config": "config/la-ribo-base.yaml",
|
| 12 |
+
"flow_model": {
|
| 13 |
+
"latent_dim": 16,
|
| 14 |
+
"explicit_backbone_mode": "p_c4prime_n",
|
| 15 |
+
"coarse_dim": 9,
|
| 16 |
+
"relpos_dim": 64,
|
| 17 |
+
"dist_num_bins": 16,
|
| 18 |
+
"dist_min": 0.0,
|
| 19 |
+
"dist_max": 32.0,
|
| 20 |
+
"time_emb_dim": 64,
|
| 21 |
+
"token_dim": 512,
|
| 22 |
+
"pair_dim": 256,
|
| 23 |
+
"cond_dim": 128,
|
| 24 |
+
"num_layers": 12,
|
| 25 |
+
"num_heads": 8,
|
| 26 |
+
"use_qkln": true,
|
| 27 |
+
"transition_expansion": 4,
|
| 28 |
+
"pair_update": {
|
| 29 |
+
"enabled": false
|
| 30 |
+
}
|
| 31 |
+
},
|
| 32 |
+
"autoencoder": {
|
| 33 |
+
"num_nt_types": 4,
|
| 34 |
+
"num_torsions": 10,
|
| 35 |
+
"latent_dim": 16,
|
| 36 |
+
"explicit_backbone": {
|
| 37 |
+
"mode": "p_c4prime_n",
|
| 38 |
+
"zero_center": true
|
| 39 |
+
},
|
| 40 |
+
"decoder_conf": {
|
| 41 |
+
"relpos_dim": 64,
|
| 42 |
+
"dist_num_bins": 16,
|
| 43 |
+
"dist_min": 0.0,
|
| 44 |
+
"dist_max": 32.0,
|
| 45 |
+
"token_dim": 256,
|
| 46 |
+
"pair_dim": 128,
|
| 47 |
+
"cond_dim": 64,
|
| 48 |
+
"num_layers": 6,
|
| 49 |
+
"num_heads": 8,
|
| 50 |
+
"use_qkln": true
|
| 51 |
+
}
|
| 52 |
+
}
|
| 53 |
+
},
|
| 54 |
+
"tri": {
|
| 55 |
+
"checkpoint": "weights/la_ribo_tri.pt",
|
| 56 |
+
"weights": "ema",
|
| 57 |
+
"inference_config": "config/la-ribo-tri.yaml",
|
| 58 |
+
"flow_model": {
|
| 59 |
+
"latent_dim": 16,
|
| 60 |
+
"explicit_backbone_mode": "p_c4prime_n",
|
| 61 |
+
"coarse_dim": 9,
|
| 62 |
+
"relpos_dim": 64,
|
| 63 |
+
"dist_num_bins": 16,
|
| 64 |
+
"dist_min": 0.0,
|
| 65 |
+
"dist_max": 32.0,
|
| 66 |
+
"time_emb_dim": 64,
|
| 67 |
+
"token_dim": 512,
|
| 68 |
+
"pair_dim": 256,
|
| 69 |
+
"cond_dim": 128,
|
| 70 |
+
"num_layers": 12,
|
| 71 |
+
"num_heads": 8,
|
| 72 |
+
"use_qkln": true,
|
| 73 |
+
"transition_expansion": 4,
|
| 74 |
+
"pair_update": {
|
| 75 |
+
"enabled": true,
|
| 76 |
+
"every": 2,
|
| 77 |
+
"use_cuequivariance": true,
|
| 78 |
+
"expansion": 2,
|
| 79 |
+
"token_to_pair": "add"
|
| 80 |
+
}
|
| 81 |
+
},
|
| 82 |
+
"autoencoder": {
|
| 83 |
+
"num_nt_types": 4,
|
| 84 |
+
"num_torsions": 10,
|
| 85 |
+
"latent_dim": 16,
|
| 86 |
+
"explicit_backbone": {
|
| 87 |
+
"mode": "p_c4prime_n",
|
| 88 |
+
"zero_center": true
|
| 89 |
+
},
|
| 90 |
+
"decoder_conf": {
|
| 91 |
+
"relpos_dim": 64,
|
| 92 |
+
"dist_num_bins": 16,
|
| 93 |
+
"dist_min": 0.0,
|
| 94 |
+
"dist_max": 32.0,
|
| 95 |
+
"token_dim": 256,
|
| 96 |
+
"pair_dim": 128,
|
| 97 |
+
"cond_dim": 64,
|
| 98 |
+
"num_layers": 6,
|
| 99 |
+
"num_heads": 8,
|
| 100 |
+
"use_qkln": true
|
| 101 |
+
}
|
| 102 |
+
}
|
| 103 |
+
}
|
| 104 |
+
},
|
| 105 |
+
"shared_files": {
|
| 106 |
+
"autoencoder": "weights/la_ribo_vae.pt",
|
| 107 |
+
"latent_stats": "weights/latent_stats.pt",
|
| 108 |
+
"coarse_stats": "weights/coarse_stats.pt"
|
| 109 |
+
},
|
| 110 |
+
"sampling": {
|
| 111 |
+
"solver": "forward_euler",
|
| 112 |
+
"num_timesteps": 200,
|
| 113 |
+
"scaffold_power": 1.25,
|
| 114 |
+
"latent_power": 2.0,
|
| 115 |
+
"self_condition": true
|
| 116 |
+
},
|
| 117 |
+
"supported_devices": [
|
| 118 |
+
"cpu",
|
| 119 |
+
"cuda"
|
| 120 |
+
],
|
| 121 |
+
"benchmark_lengths": [
|
| 122 |
+
40,
|
| 123 |
+
50,
|
| 124 |
+
60,
|
| 125 |
+
70,
|
| 126 |
+
80,
|
| 127 |
+
90,
|
| 128 |
+
100,
|
| 129 |
+
110,
|
| 130 |
+
120,
|
| 131 |
+
130,
|
| 132 |
+
140,
|
| 133 |
+
150
|
| 134 |
+
]
|
| 135 |
+
}
|