metadata
license: mit
tags:
- nanopore
- pod5
- compression
- cuda
- cli
NanoRecon App
NanoRecon App provides prebuilt Linux CLI archives for NanoRecon.
Source code and issue tracking are hosted on GitHub:
https://github.com/GHSSHG/Nanopore-Reconstruction-APP
The model weights are hosted separately:
https://huggingface.co/GHSSHG/NanoRecon
Download
wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz
wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz.sha256
sha256sum -c nanorecon-0.1.0-linux-x86_64.tar.gz.sha256
tar -xzf nanorecon-0.1.0-linux-x86_64.tar.gz
Quick Start
./nanorecon-0.1.0-linux-x86_64/bin/nanorecon --version
./nanorecon-0.1.0-linux-x86_64/bin/nanorecon doctor
./nanorecon-0.1.0-linux-x86_64/bin/nanorecon models pull
./nanorecon-0.1.0-linux-x86_64/bin/nanorecon compress input.pod5 --output output.nrpod
./nanorecon-0.1.0-linux-x86_64/bin/nanorecon decompress output.nrpod --output reconstructed.pod5
Requirements
- Linux x86_64
- NVIDIA GPU with a compatible driver
- CUDA-capable JAX runtime included in the release archive
- Network access to Hugging Face for the first model download
CPU execution is not supported by the release CLI.
v0.1.0
4557f50c3361020bd38280380631b059c7d95c458a5ff4b2bd8bc54c2fa4a0e6 nanorecon-0.1.0-linux-x86_64.tar.gz