| license: mit | |
| tags: | |
| - nanopore | |
| - pod5 | |
| - compression | |
| - cuda | |
| - cli | |
| # NanoRecon App | |
| NanoRecon App provides prebuilt Linux CLI archives for NanoRecon. | |
| Source code and issue tracking are hosted on GitHub: | |
| ```text | |
| https://github.com/GHSSHG/Nanopore-Reconstruction-APP | |
| ``` | |
| The model weights are hosted separately: | |
| ```text | |
| https://huggingface.co/GHSSHG/NanoRecon | |
| ``` | |
| ## Download | |
| ```bash | |
| wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz | |
| wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz.sha256 | |
| sha256sum -c nanorecon-0.1.0-linux-x86_64.tar.gz.sha256 | |
| tar -xzf nanorecon-0.1.0-linux-x86_64.tar.gz | |
| ``` | |
| ## Quick Start | |
| ```bash | |
| ./nanorecon-0.1.0-linux-x86_64/bin/nanorecon --version | |
| ./nanorecon-0.1.0-linux-x86_64/bin/nanorecon doctor | |
| ./nanorecon-0.1.0-linux-x86_64/bin/nanorecon models pull | |
| ./nanorecon-0.1.0-linux-x86_64/bin/nanorecon compress input.pod5 --output output.nrpod | |
| ./nanorecon-0.1.0-linux-x86_64/bin/nanorecon decompress output.nrpod --output reconstructed.pod5 | |
| ``` | |
| ## Requirements | |
| - Linux x86_64 | |
| - NVIDIA GPU with a compatible driver | |
| - CUDA-capable JAX runtime included in the release archive | |
| - Network access to Hugging Face for the first model download | |
| CPU execution is not supported by the release CLI. | |
| ## v0.1.0 | |
| ```text | |
| 4557f50c3361020bd38280380631b059c7d95c458a5ff4b2bd8bc54c2fa4a0e6 nanorecon-0.1.0-linux-x86_64.tar.gz | |
| ``` | |