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README.md
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---
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license: mit
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tags:
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- nanopore
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- pod5
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- compression
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- cuda
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- cli
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---
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# NanoRecon App
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NanoRecon App provides prebuilt Linux CLI archives for NanoRecon.
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Source code and issue tracking are hosted on GitHub:
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```text
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https://github.com/GHSSHG/Nanopore-Reconstruction-APP
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```
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The model weights are hosted separately:
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```text
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https://huggingface.co/GHSSHG/NanoRecon
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```
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## Download
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```bash
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wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz
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wget https://huggingface.co/GHSSHG/NanoRecon-App/resolve/main/v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz.sha256
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sha256sum -c nanorecon-0.1.0-linux-x86_64.tar.gz.sha256
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tar -xzf nanorecon-0.1.0-linux-x86_64.tar.gz
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```
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## Quick Start
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```bash
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./nanorecon-0.1.0-linux-x86_64/bin/nanorecon --version
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./nanorecon-0.1.0-linux-x86_64/bin/nanorecon doctor
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./nanorecon-0.1.0-linux-x86_64/bin/nanorecon models pull
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./nanorecon-0.1.0-linux-x86_64/bin/nanorecon compress input.pod5 --output output.nrpod
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./nanorecon-0.1.0-linux-x86_64/bin/nanorecon decompress output.nrpod --output reconstructed.pod5
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```
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## Requirements
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- Linux x86_64
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- NVIDIA GPU with a compatible driver
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- CUDA-capable JAX runtime included in the release archive
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- Network access to Hugging Face for the first model download
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CPU execution is not supported by the release CLI.
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## v0.1.0
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```text
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4557f50c3361020bd38280380631b059c7d95c458a5ff4b2bd8bc54c2fa4a0e6 nanorecon-0.1.0-linux-x86_64.tar.gz
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```
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v0.1.0/manifest.json
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{
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"name": "NanoRecon CLI",
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"version": "0.1.0",
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"platform": "linux-x86_64",
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"cuda": "cuda12",
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"archive": "nanorecon-0.1.0-linux-x86_64.tar.gz",
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"archive_sha256": "4557f50c3361020bd38280380631b059c7d95c458a5ff4b2bd8bc54c2fa4a0e6",
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"source_repo": "https://github.com/GHSSHG/Nanopore-Reconstruction-APP",
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"app_repo": "https://huggingface.co/GHSSHG/NanoRecon-App",
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"model_repo": "GHSSHG/NanoRecon",
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"model_revision": "92be5d5aa05990eccc9edca33c263ee5ffc72739",
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"model_weights_sha256": "20fdc3e583253a80ae6801ea0461354ee1248461c2cd1481c500ba578fad605b",
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"model_config_sha256": "b7264d15ff80eab7418575df87f481c5e0327841cd22fe7fa2dce14a168010cc"
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}
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v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz
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version https://git-lfs.github.com/spec/v1
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oid sha256:4557f50c3361020bd38280380631b059c7d95c458a5ff4b2bd8bc54c2fa4a0e6
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size 3478268934
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v0.1.0/nanorecon-0.1.0-linux-x86_64.tar.gz.sha256
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version https://git-lfs.github.com/spec/v1
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oid sha256:42c4afeb7ab41ac208dbdd22cac5b642c811ef03f1e9b6cc02f5b82f2a834c9f
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size 102
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