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README.md
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### MolJO (Molecule Joint Optimization)
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* **Description**: MolJO is a gradient-based SBMO framework that leverages a continuous and differentiable space derived through Bayesian inference. It facilitates **joint guidance signals across different modalities** (continuous coordinates and discrete atom types) while preserving SE(3)-equivariance. MolJO introduces a novel backward correction strategy for an effective trade-off between exploration and exploitation.
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* **Key Contributions**:
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### MolPilot (How to Pilot the Aircraft)
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* **Description**: MolPilot addresses challenges in geometric structure modeling by focusing on the **twisted probability path of multi-modalities** (continuous 3D positions and discrete 2D topologies). It proposes a VLB-Optimal Scheduling (VOS) strategy, optimizing the Variational Lower Bound as a path integral for SBDD. MolPilot significantly enhances molecular geometries and interaction modeling.
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* **Key Contributions**:
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🎉 Our demo is now available [here](http://61.241.63.126:8000). Welcome to have a try!
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## Environment
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It is highly recommended to install via docker if a Linux server with NVIDIA GPU is available.
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### MolJO (Molecule Joint Optimization)
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* **Description**: MolJO is a gradient-based SBMO framework that leverages a continuous and differentiable space derived through Bayesian inference. It facilitates **joint guidance signals across different modalities** (continuous coordinates and discrete atom types) while preserving SE(3)-equivariance. MolJO introduces a novel backward correction strategy for an effective trade-off between exploration and exploitation.
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* **Key Contributions**:
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### MolPilot (How to Pilot the Aircraft)
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<!--  -->
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* **Description**: MolPilot addresses challenges in geometric structure modeling by focusing on the **twisted probability path of multi-modalities** (continuous 3D positions and discrete 2D topologies). It proposes a VLB-Optimal Scheduling (VOS) strategy, optimizing the Variational Lower Bound as a path integral for SBDD. MolPilot significantly enhances molecular geometries and interaction modeling.
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* **Key Contributions**:
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🎉 Our demo is now available [here](http://61.241.63.126:8000). Welcome to have a try!
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<!--  -->
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## Environment
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It is highly recommended to install via docker if a Linux server with NVIDIA GPU is available.
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