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assayformer

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assayloop
biology
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assayformer
File size: 1,562 Bytes
61cdabd
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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{
  "arch": {
    "vocab_size": 24217,
    "text_dim": 1536,
    "d_model": 384,
    "d_gene": 10,
    "d_hit": 64,
    "nhead": 2,
    "num_layers": 3,
    "dim_feedforward": 1024,
    "dropout": 0.0,
    "encoder_type": "transformer",
    "bert_model": "answerdotai/ModernBERT-base",
    "freeze_bert": false,
    "bert_pool": "cls",
    "text_max_tokens": 2048,
    "use_description": true,
    "freeze_factors": false,
    "disable_gene_bias": false,
    "variational": false
  },
  "text_backend": "azure",
  "text_model": "text-embedding-3-small",
  "encoder_type": "transformer",
  "bert_model": "answerdotai/ModernBERT-base",
  "bert_pool": "cls",
  "text_max_tokens": 2048,
  "rl": {
    "init_checkpoint": "output/rankers/gf-bpmf-train-hits",
    "from_scratch": false,
    "aux_hit_coef": 0.0,
    "disable_gene_bias": false,
    "epochs": 100,
    "group_size": 8,
    "n_steps": 10,
    "batch_size": 100,
    "gamma": 1.0,
    "temperature": 1.0,
    "kl_coef": 0.0,
    "ent_coef": 0.01,
    "terminal_coef": 1.0,
    "reward_mode": "context_delta",
    "ctx_reset_epochs": 25,
    "adv_std_floor": 1e-06,
    "adv_clip": 0.0,
    "lr": 1e-05,
    "bert_lr": 1e-06,
    "rl_max_context": 1024,
    "seed": 19,
    "train_screen_set": "public_train",
    "eval_screen_set": "public_validation",
    "wandb_group": null,
    "wandb_tags": [
      "rl",
      "gf",
      "full_genome"
    ],
    "warm_start": {
      "glm_train": null,
      "n": 0,
      "eval_dir": null,
      "eval_prefix": "sweep-ad6af08f-",
      "eval_warm_n": 0
    }
  }
}