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README.md
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# 1. Metadata Block
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license: mit
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library_name: pytorch-lightning
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pipeline_tag: tabular-classification
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- biology
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- genomics
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datasets:
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- Genentech/human-
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base_model:
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- Genentech/enformer-model
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# human-chromhmm-fullstack-model
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## Model Description
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This model is a multi-
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- **Architecture:** Fine-tuned Enformer
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- **Input:** Genomic sequences (hg38)
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- **Output:** Probability
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## Repository Content
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1. `model.ckpt`: The trained model weights and hyperparameters (PyTorch Lightning checkpoint).
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from huggingface_hub import hf_hub_download
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ckpt_path = hf_hub_download(
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repo_id="Genentech/human-
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filename="model.ckpt"
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)
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---
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license: mit
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library_name: pytorch-lightning
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pipeline_tag: tabular-classification
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- biology
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- genomics
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datasets:
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- Genentech/human-atac-catlas-data
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base_model:
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- Genentech/enformer-model
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---
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# human-chromhmm-fullstack-model
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## Model Description
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This model is a multi-task classifier trained to predict the binary accessibility of genomic DNA sequences in 204 cell types. It was trained by fine-tuning the Enformer model using the `grelu` library on top of the human ChromHMM fullstack annotation dataset.
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- **Architecture:** Fine-tuned Enformer
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- **Input:** Genomic sequences (hg38)
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- **Output:** Probability of accessibility in 204 cell types.
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## Repository Content
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1. `model.ckpt`: The trained model weights and hyperparameters (PyTorch Lightning checkpoint).
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from huggingface_hub import hf_hub_download
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ckpt_path = hf_hub_download(
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repo_id="Genentech/human-atac-catlas-model",
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filename="model.ckpt"
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)
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