Upload 3 files
Browse files- best_g.pt +3 -0
- config.json +40 -0
- inference.py +108 -0
best_g.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:9f95490b3f85f96d425e4cbdbdad12a21f2a287235b98e36fa9e8667df4eeb3b
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size 237307698
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config.json
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{
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"model_name": "EEG Data Synthesis with WGAN-GP",
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"architecture": "conditional_wgan_gp",
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"latent_dim": 128,
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"num_subjects": 109,
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"num_channels": 64,
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"segment_length": 480,
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"generator_fc_layers": [256, 2048, 7680],
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"deconv_layers": [
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{"type": "ConvTranspose1d", "kernel_size": 4, "stride": 4, "dilation": 1},
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{"type": "Conv1d", "kernel_size": 3, "padding": 2, "dilation": 2},
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{"type": "Conv1d", "kernel_size": 3, "padding": 4, "dilation": 4}
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],
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"activation": "tanh",
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"optimizer": {
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"type": "Adam",
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"beta1": 0.0,
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"beta2": 0.9,
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"lr_generator": 1e-4,
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"lr_discriminator": 5e-5
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},
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"training": {
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"epochs": 300,
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"batch_size": 42,
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"gradient_penalty_lambda": 5,
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"drift_regularization": 0.001,
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"n_critic": 1,
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"mixed_precision": true
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},
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"dataset": {
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"name": "PhysioNet EEG Motor Movement/Imagery",
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"num_subjects": 109,
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"sampling_rate": 160,
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"channels": 64,
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"segment_length": 480,
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"normalization": "[-1, 1]",
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"tasks": ["left_fist", "right_fist", "both_fists", "both_feet", "eyes_open", "eyes_closed"]
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},
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"description": "Trained conditional EEG generator (WGAN-GP) using 109 subjects from the PhysioNet EEG Motor Movement/Imagery dataset."
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}
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inference.py
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import torch
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import torch.nn as nn
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import numpy as np
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import json
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from pathlib import Path
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# ----------------------------------------------------------
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# Load config
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# ----------------------------------------------------------
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CONFIG_PATH = Path(__file__).parent / "config.json"
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with open(CONFIG_PATH, "r") as f:
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config = json.load(f)
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latent_dim = config["latent_dim"]
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num_subjects = config["num_subjects"]
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num_channels = config["num_channels"]
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segment_length = config["segment_length"]
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device = "cuda" if torch.cuda.is_available() else "cpu"
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# ----------------------------------------------------------
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# Define the same Generator as in your training script
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# ----------------------------------------------------------
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class Generator(nn.Module):
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def __init__(self, latent_dim=128, n_classes=109, channels=64, seq_len=480):
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super().__init__()
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self.latent_dim = latent_dim
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self.label_emb = nn.Embedding(n_classes, latent_dim)
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self.fc = nn.Sequential(
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nn.Linear(latent_dim * 2, 2048),
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nn.ReLU(),
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nn.Dropout(0.1),
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nn.Linear(2048, channels * 120),
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nn.ReLU()
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)
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self.deconv = nn.Sequential(
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nn.ConvTranspose1d(channels, channels, kernel_size=4, stride=4, padding=0, dilation=1),
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nn.ReLU(),
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nn.Conv1d(channels, channels, kernel_size=3, padding=2, dilation=2),
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nn.ReLU(),
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nn.Conv1d(channels, channels, kernel_size=3, padding=4, dilation=4),
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nn.Tanh()
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)
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def forward(self, z, labels):
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label_emb = self.label_emb(labels)
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x = torch.cat([z, label_emb], dim=1)
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x = self.fc(x)
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x = x.view(x.size(0), 64, 120)
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x = x + 0.05 * torch.randn_like(x) # noise injection
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x = self.deconv(x)
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return x # shape: (batch, channels, seq_len)
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# ----------------------------------------------------------
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# Load model weights
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# ----------------------------------------------------------
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MODEL_PATH = Path(__file__).parent / "best_g.pt"
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generator = Generator(latent_dim, num_subjects, num_channels, segment_length).to(device)
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checkpoint = torch.load(MODEL_PATH, map_location=device)
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if "G_state" in checkpoint: # full checkpoint from training
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generator.load_state_dict(checkpoint["G_state"])
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else: # only weights saved
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generator.load_state_dict(checkpoint)
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generator.eval()
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print("Generator loaded successfully on", device)
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# ----------------------------------------------------------
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# EEG generation function
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# ----------------------------------------------------------
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def generate_eeg(subject_id: int, num_samples: int = 1, seed: int | None = None):
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"""
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Generate synthetic EEG segments for a given subject ID.
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Args:
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subject_id (int): Subject label
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num_samples (int): Number of EEG samples to generate
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seed (int, optional): Random seed for reproducibility
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Returns:
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np.ndarray: Generated EEG of shape (num_samples, num_channels, segment_length)
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"""
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if seed is not None:
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torch.manual_seed(seed)
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z = torch.randn(num_samples, latent_dim, device=device)
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labels = torch.full((num_samples,), subject_id, dtype=torch.long, device=device)
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with torch.no_grad():
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fake_eeg = generator(z, labels).cpu().numpy()
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return fake_eeg
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# ----------------------------------------------------------
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# Example usage
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# ----------------------------------------------------------
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if __name__ == "__main__":
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subject_id = 42
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samples = generate_eeg(subject_id=subject_id, num_samples=5, seed=123)
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print(f"Generated {samples.shape[0]} EEG samples for subject {subject_id}")
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print("EEG shape:", samples.shape)
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print("Value range:", samples.min(), "to", samples.max())
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